Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018942

Physical Location & Seq

Genomic Coordinates Forward (+)

35022135 .. 35040249

Gene Structure 18115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCATCAATGACATCTAAATTACCAGAATCATTGAAGATGTTATGCCAATGGGGTGAGGACAAATTCAGAGATGGACGTACCATCAACTTCCACATAGAACCTGAAGTCTTTGCATTCTCTCGCAAGACCTTTATAATGGGATCAGATGTTCGACGACTTGCAAGCATGAGGGAAGTTTCTGGAACTTGTATTGTTGTGTACCAAAGGTTTCTGCGACTAGATAAACAATCGTTTACAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTGTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGTTGAACTTGCTTTGAAGGTTCTTGCACGAAAGGCAAAGAACCAGTATTCTTGGAAAGGATATGGGGCAATCTCTAATGCTATACATGAGCTTAAGGTGGGCAAATGTCTGACAGCATTTTCATTGCTCATAGAAGAGCAAAAGGTATTACAAGACCACAGTCATGAAGTCTGGTTTGTTCAATTTCACACAATGAGAAATTCTTGGCTGGATCATCAAGTGTTAAATCAGCTATTATATTGGAGGAGAGCAAAGAGCGGCTTGGAACCAATGGTAGCTTTGCTACAGCTTGTTTCTCTATATCGAAGGTCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

225

Amino Acids

26.27

Weight (kDa)

9.51

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339461 RchiOBHm_Chr2g0096161 RchiOBHm_Chr6g0291331
rosa_multiflora	Rmu_sc0005996.1_g000017
rosa_roxburghii	Rroxscaffold_1G00035040
rosa_rugosa	Rorug04G0002100
rosa_samantha	Rh1AG290300 Rh2BG302500 Rh3DG310700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	618
AciI	CCGC	2 cut(s)	271, 618
AclWI	GGATC	2 cut(s)	151, 579
AcsI	RAATTY	2 cut(s)	65, 559
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	82, 203
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	5 cut(s)	37, 283, 365, 376, 542
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	451, 592, 638, 649
AluI	AGCT	4 cut(s)	451, 592, 638, 649
AlwI	GGATC	2 cut(s)	151, 579
ApoI	RAATTY	2 cut(s)	65, 559
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	305
BccI	CCATC	3 cut(s)	68, 92, 260
BciVI	GTATCC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	221, 323
BfmI	CTRYAG	1 cut(s)	644
BfrI	CTTAAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	620
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	627
BmsI	GCATC	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	143, 571
BspACI	CCGC	2 cut(s)	271, 618
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	151, 579
BspQI	GCTCTTC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	143, 571
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstKTI	GATC	2 cut(s)	146, 574
BstMBI	GATC	2 cut(s)	143, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	166
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	81, 202
CviAII	CATG	3 cut(s)	169, 446, 524
CviJI	RGCY	6 cut(s)	451, 568, 592, 621, 638, 649
CviKI_1	RGCY	6 cut(s)	451, 568, 592, 621, 638, 649
CviQI	GTAC	2 cut(s)	81, 202
DpnI	GATC	2 cut(s)	145, 573
DpnII	GATC	2 cut(s)	143, 571
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	305
FaeI	CATG	3 cut(s)	172, 449, 527
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 605, 637
FatI	CATG	3 cut(s)	168, 445, 523
Fnu4HI	GCNGC	1 cut(s)	619
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	2 cut(s)	221, 323
GluI	GCNGC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	172, 449, 527
HinfI	GANTC	3 cut(s)	29, 276, 326
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	202, 237
Hpy188I	TCNGA	4 cut(s)	71, 148, 331, 471
Hpy188III	TCNNGA	3 cut(s)	183, 280, 524
Hpy8I	GTNNAC	2 cut(s)	202, 237
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	370, 660
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	116, 164, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	172, 449, 527
Kzo9I	GATC	2 cut(s)	143, 571
LguI	GCTCTTC	1 cut(s)	489
LpnPI	CCDG	6 cut(s)	39, 117, 168, 416, 517, 554
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	221, 323
MaeII	ACGT	1 cut(s)	79
MalI	GATC	2 cut(s)	145, 573
MbiI	CCGCTC	1 cut(s)	618
MboI	GATC	2 cut(s)	143, 571
MboII	GAAGA	2 cut(s)	49, 506
MluCI	AATT	4 cut(s)	20, 65, 542, 559
MnlI	CCTC	5 cut(s)	52, 165, 289, 318, 597
MseI	TTAA	2 cut(s)	453, 584
MslI	CAYNNNNRTG	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	143, 571
NlaIII	CATG	3 cut(s)	172, 449, 527
NlaIV	GGNNCC	1 cut(s)	627
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	489
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	29, 276, 326
PkrI	GCNGC	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
RsaI	GTAC	2 cut(s)	82, 203
RsaNI	GTAC	2 cut(s)	81, 202
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	453, 584
SatI	GCNGC	1 cut(s)	619
Sau3AI	GATC	2 cut(s)	143, 571
Sau96I	GGNCC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	644
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	20, 65, 542, 559
SsiI	CCGC	2 cut(s)	271, 618
SspMI	CTAG	2 cut(s)	221, 323
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	154, 664
TasI	AATT	4 cut(s)	20, 65, 542, 559
TauI	GCSGC	1 cut(s)	621
TfiI	GAWTC	3 cut(s)	29, 276, 326
Tru1I	TTAA	2 cut(s)	453, 584
Tru9I	TTAA	2 cut(s)	453, 584
TspDTI	ATGAA	2 cut(s)	471, 540
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	2 cut(s)	65, 559
XspI	CTAG	2 cut(s)	221, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.