Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018942

Physical Location & Seq

Genomic Coordinates Forward (+)

52036183 .. 52038941

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTAACATGGGTTGCCTATACTGCAGGGAATTGGATTGCAAGAGTTCTTGCGCGAAAGGCAAAGAACCAGTATTCTTGGAAAGGATATGGGGCAATCTCTAATGCTATACAGGAGCTTAAGTTTTTAAAAAAATTGTTTGGGAAATGCGAAGGTTTGATCCATATCTTGATAAGAATTATTTATGTTTTCTGTCTAGCAATGCGGAAGCTAGCTACTACGTTCTACAAAGTATTACAAGACCACAGTCATGAAGTCTGGTTTGTTCAATTTCACACAATGAGAAATTCTTGGCTGGATCATCAAGTGTTAAATCAGCTATTATATTGGAGGAGAGCAAAGAGCGGCTTGGAACCAATGGTAGCTTTGCTACAGCTTGTTTCTCTATATCGAAGGTGGGAGAACAAATGGAATCTAGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

141

Amino Acids

16.89

Weight (kDa)

10.05

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339461 RchiOBHm_Chr2g0096161 RchiOBHm_Chr6g0291331
rosa_multiflora	Rmu_sc0005996.1_g000017
rosa_roxburghii	Rroxscaffold_1G00035040
rosa_rugosa	Rorug04G0002100
rosa_samantha	Rh1AG290300 Rh2BG302500 Rh3DG310700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	205, 345
AclWI	GGATC	2 cut(s)	154, 306
AcsI	RAATTY	1 cut(s)	286
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	6 cut(s)	118, 211, 215, 319, 365, 376
AluI	AGCT	6 cut(s)	118, 211, 215, 319, 365, 376
AlwI	GGATC	2 cut(s)	154, 306
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	55
AsuNHI	GCTAGC	1 cut(s)	211
BfaI	CTAG	3 cut(s)	197, 212, 416
BfmI	CTRYAG	2 cut(s)	24, 371
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	354
BmtI	GCTAGC	1 cut(s)	215
BoxI	GACNNNNGTC	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	159, 298
BspACI	CCGC	2 cut(s)	205, 345
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	28
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	154, 306
BspTI	CTTAAG	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	159, 298
Bst4CI	ACNGT	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	162, 301
BstMBI	GATC	2 cut(s)	159, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 59
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	24, 371
BstUI	CGCG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	9, 251
CviJI	RGCY	8 cut(s)	118, 211, 215, 295, 319, 348, 365, 376
CviKI_1	RGCY	8 cut(s)	118, 211, 215, 295, 319, 348, 365, 376
DpnI	GATC	2 cut(s)	161, 300
DpnII	GATC	2 cut(s)	159, 298
DraI	TTTAAA	1 cut(s)	129
FaeI	CATG	2 cut(s)	12, 254
FaiI	YATR	9 cut(s)	10, 21, 90, 110, 165, 186, 252, 325, 388
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	2 cut(s)	8, 250
Fnu4HI	GCNGC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	3 cut(s)	197, 212, 416
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	12, 254
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	169, 251, 416
HpyAV	CCTTC	2 cut(s)	146, 387
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	26, 41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 59
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	12, 254
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	159, 298
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	12, 83, 98, 244, 281
MaeI	CTAG	3 cut(s)	197, 212, 416
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	161, 300
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	2 cut(s)	159, 298
MluCI	AATT	5 cut(s)	31, 134, 177, 269, 286
MnlI	CCTC	1 cut(s)	324
MseI	TTAA	3 cut(s)	120, 128, 311
MslI	CAYNNNNRTG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	23, 59
NdeII	GATC	2 cut(s)	159, 298
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	12, 254
NlaIV	GGNNCC	1 cut(s)	354
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	120, 128, 311
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	2 cut(s)	159, 298
SetI	ASST	9 cut(s)	120, 157, 213, 217, 224, 321, 367, 378, 398
SfcI	CTRYAG	2 cut(s)	24, 371
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	31, 134, 177, 269, 286
SsiI	CCGC	2 cut(s)	205, 345
SspMI	CTAG	3 cut(s)	197, 212, 416
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	391
TasI	AATT	5 cut(s)	31, 134, 177, 269, 286
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	3 cut(s)	120, 128, 311
Tru9I	TTAA	3 cut(s)	120, 128, 311
TspDTI	ATGAA	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	415
XspI	CTAG	3 cut(s)	197, 212, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.