Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006263.1

Orthogroup ID

OG0012265

Physical Location & Seq

Genomic Coordinates Forward (+)

59637 .. 64147

Gene Structure 4511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

atggcggagctcccaatccttcagttcgaagagaaaatcatcgaaacagtagagcggaaccccgtcgttgtcatcatcggagagaccggttccggaaagagcacgcagctctctcaaatcctccacagaagaggctacaccgactccggcatcgtcggcgtcactcagcctcgccgtgtcgccgccgtctccgtcgccagacgagtttcgcaggagctcaatgttcggctcggcgaggaagtcggatacgccatcagattcgaagatagaacttccgaaaggactcggatcaagtacttgaccgatggagttcttcttcgtgagagcctatccaatccggagctcgatcagtactctgtaattatactcgatgaggctcacgagagaagtctcaacacggacatattgctgggactgatgaaacgattggtgaagaggcgtgcttcgaatttgaaggttcttattacttcggcgactcttgatggtgataaagtatcacagttcttttcgaattgcccggtgctgaatgttccggggaagctataccctgtggagatattgtacagcaatgagcgtcctaagagctatcttgagtcgtctttgaaaacagctctcgatatacatattaaggaacctgaaggagatgtcttgatattcatgactgggcaggatgacatagagaagttggtctctaagttagaagatagagttagaagcctggaagaaggatctgtcttggatgccataatccttcctcttcacggttctctgcagcctgaaatgcaggcaagcaaagacttgactttccggcagtacaacccctcaactggcatgtactccctcgaagttgttcaaattagcaaggtacaagctaatcaacgagcaggacgagctggaaggacacgtcctgggaaatgctatcggttatatccttccgttgcttaccatgaggagctgctggatgcaacaattcctgaaattcaacgttcttcacttgctggaagtgttctttatttgaaatccttggacctccctgatattgacattctcacattcgattttcttgattctccttcctctgaatctttacaagatgctctgaagcagttgtatctcattgatgctattgatgaaaatggattgatcacgagagttgggaaaacaatggctgagcttccactagaaccttcactgtcaagaaccttaatggaggcaaatgagtgtggttgcttgtcccaggctttgacagttgctgctatgttatctgcagaaactacattgcttcctggtcgaagcaagagtactgagaagaaaaggaaacatgatcacttggaccttcctgatggttctggttggggtgatcacatccagttgctacagatctatgagtgctggcatcaaactcactatgacattgattggtgcaaggaccgtggcttgcaggtaagagggatgacgtttgtcagggatgtaaggaaacagctatgtcaaataatgcaaaaaatagcaaagggatcattagatgtacagacaagcagaagagggaaacaaacccaacaggattataataacttgaggaaggctttatgtgtggggtatgcaaatcagcttgctgagagaatggtatttcacaatggctatcgaactttaggttttaagccccaagtagtacaggtgcatccatcctctgtgctaaaaccagatgatgaagggaaatttccaaattatgtcgtgtaccaggaacttattgccacttctcgtccatacttgcgcactgtatgtgctgtaaatgttgcatgggttacacccattttgaacaaggttaataaactaaacatcaacaagctgagcggtgggagtggtcatattgaagagcatgcagagggaaatatttctgatttgccaaagaaagatgctgttacagcagttcctgatgatcaagaaagtaaaatacaagcagccagagaacgatttcttgctcgtaaaggaaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

665

Amino Acids

74.62

Weight (kDa)

7.22

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	11 - 166	2.9e-08	DEAD/DEAH box helicase
AAA_22	PF13401	21 - 136	7.7e-07	AAA domain
WHD_HA2	PF04408	366 - 394	3.3e-08	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	395 - 458	6e-08	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	525 - 605	2.3e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27900 AT1G27900 AT1G27900
fragaria_vesca	FvH4_4g24140 FvH4_4g24140
malus_domestica	MD13G1115200.v1.1
prunus_persica	Prupe.1G232100_v2.0.a1 Prupe.1G232100_v2.0.a1
pyrus_communis	pycom13g09970
rosa_chinensis	RchiOBHm_Chr4g0430911
rosa_laevigata	RLG00000006939
rosa_multiflora	Rmu_sc0006263.1_g000011
rosa_roxburghii	Rroxscaffold_5G00372600
rosa_rugosa	Rorug04G0247300
rosa_samantha	Rh4AG302800 Rh4AG303700 Rh4BG310900 Rh4CG327300
rosa_wichuraiana	Rw4G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1566
Acc16I	TGCGCA	1 cut(s)	1772
Acc36I	ACCTGC	1 cut(s)	1432
AccBSI	CCGCTC	2 cut(s)	55, 1851
AccIII	TCCGGA	2 cut(s)	92, 337
AciI	CCGC	4 cut(s)	5, 55, 183, 1851
AclI	AACGTT	1 cut(s)	985
AclWI	GGATC	3 cut(s)	296, 736, 1522
AcsI	RAATTY	3 cut(s)	448, 978, 1715
AcuI	CTGAAG	3 cut(s)	5, 657, 1121
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	761, 827
AflIII	ACRYGT	1 cut(s)	902
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	7 cut(s)	454, 604, 854, 983, 1018, 1816, 1871
AjiI	CACGTC	1 cut(s)	905
AjnI	CCWGG	5 cut(s)	717, 907, 1236, 1285, 1737
Alw21I	GWGCWC	4 cut(s)	12, 104, 219, 345
Alw26I	GTCTC	4 cut(s)	77, 193, 395, 694
AlwI	GGATC	3 cut(s)	296, 736, 1522
AlwNI	CAGNNNCTG	2 cut(s)	1253, 1931
Aor13HI	TCCGGA	2 cut(s)	92, 337
ApeKI	GCWGC	5 cut(s)	106, 772, 955, 1253, 1958
ApoI	RAATTY	3 cut(s)	448, 978, 1715
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	3 cut(s)	849, 1891, 1971
AspLEI	GCGC	1 cut(s)	1773
AspS9I	GGNCC	3 cut(s)	1027, 1333, 1429
AsuC2I	CCSGG	2 cut(s)	518, 534
AsuHPI	GGTGA	3 cut(s)	442, 497, 1370
AsuII	TTCGAA	4 cut(s)	27, 261, 446, 509
AvaII	GGWCC	3 cut(s)	1027, 1333, 1429
BanII	GRGCYC	3 cut(s)	12, 219, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	1285, 1317
BauI	CACGAG	2 cut(s)	380, 1147
Bbv12I	GWGCWC	4 cut(s)	12, 104, 219, 345
BbvI	GCAGC	5 cut(s)	118, 784, 942, 1240, 1970
BccI	CCATC	5 cut(s)	260, 299, 476, 1337, 1690
BceAI	ACGGC	2 cut(s)	159, 170
BciT130I	CCWGG	5 cut(s)	719, 909, 1238, 1287, 1739
BciVI	GTATCC	1 cut(s)	239
BclI	TGATCA	4 cut(s)	1143, 1324, 1360, 1936
BcnI	CCSGG	2 cut(s)	518, 534
BcoDI	GTCTC	4 cut(s)	77, 193, 395, 694
BfaI	CTAG	1 cut(s)	1181
BfmI	CTRYAG	3 cut(s)	770, 1266, 1376
BfuAI	ACCTGC	1 cut(s)	1432
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	1380
BisI	GCNGC	6 cut(s)	107, 183, 773, 956, 1254, 1959
BlpI	GCTNAGC	2 cut(s)	1170, 1847
BlsI	GCNGC	6 cut(s)	108, 184, 774, 957, 1255, 1960
BmcAI	AGTACT	3 cut(s)	296, 353, 1303
Bme1390I	CCNGG	7 cut(s)	518, 534, 719, 909, 1238, 1287, 1739
Bme18I	GGWCC	3 cut(s)	1027, 1333, 1429
BmgBI	CACGTC	1 cut(s)	905
BmgT120I	GGNCC	3 cut(s)	1027, 1333, 1429
BmiI	GGNNCC	3 cut(s)	59, 91, 633
BmrFI	CCNGG	7 cut(s)	518, 534, 719, 909, 1238, 1287, 1739
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	8 cut(s)	159, 730, 952, 1084, 1111, 1405, 1687, 1903
BmuI	ACTGGG	1 cut(s)	672
BoxI	GACNNNNGTC	1 cut(s)	1460
Bpu1102I	GCTNAGC	2 cut(s)	1170, 1847
Bpu14I	TTCGAA	4 cut(s)	27, 261, 446, 509
BpuEI	CTTGAG	2 cut(s)	611, 1594
BpuMI	CCSGG	2 cut(s)	518, 534
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	77, 694
BsaJI	CCNNGG	5 cut(s)	533, 908, 1023, 1236, 1432
BsaWI	WCCGGW	3 cut(s)	86, 92, 337
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	761, 827
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	667, 832, 1369
Bse3DI	GCAATG	2 cut(s)	574, 1277
BseAI	TCCGGA	2 cut(s)	92, 337
BseBI	CCWGG	5 cut(s)	719, 909, 1238, 1287, 1739
BseDI	CCNNGG	5 cut(s)	533, 908, 1023, 1236, 1432
BseGI	GGATG	8 cut(s)	676, 745, 967, 1365, 1458, 1474, 1678, 1682
BseLI	CCNNNNNNNGG	2 cut(s)	761, 827
BseMI	GCAATG	2 cut(s)	574, 1277
BseMII	CTCAG	5 cut(s)	179, 1161, 1296, 1605, 1838
BseNI	ACTGG	3 cut(s)	667, 832, 1369
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	5 cut(s)	118, 784, 942, 1240, 1970
BseYI	CCCAGC	1 cut(s)	409
BshTI	ACCGGT	1 cut(s)	86
BsiHKAI	GWGCWC	4 cut(s)	12, 104, 219, 345
BsiSI	CCGG	7 cut(s)	87, 93, 147, 338, 518, 533, 808
BslFI	GGGAC	2 cut(s)	426, 1219
BslI	CCNNNNNNNGG	2 cut(s)	761, 827
BsmAI	GTCTC	4 cut(s)	77, 193, 395, 694
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	426, 1219
Bso31I	GGTCTC	2 cut(s)	77, 694
Bsp119I	TTCGAA	4 cut(s)	27, 261, 446, 509
Bsp1286I	GDGCHC	4 cut(s)	12, 104, 219, 345
Bsp13I	TCCGGA	2 cut(s)	92, 337
Bsp1407I	TGTACA	2 cut(s)	561, 1525
Bsp143I	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
Bsp1720I	GCTNAGC	2 cut(s)	1170, 1847
BspACI	CCGC	4 cut(s)	5, 55, 183, 1851
BspCNI	CTCAG	5 cut(s)	178, 1162, 1297, 1606, 1839
BspEI	TCCGGA	2 cut(s)	92, 337
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	59, 91, 633
BspMAI	CTGCAG	2 cut(s)	774, 1270
BspMI	ACCTGC	1 cut(s)	1432
BspPI	GGATC	3 cut(s)	296, 736, 1522
BspQI	GCTCTTC	1 cut(s)	1866
BspT104I	TTCGAA	4 cut(s)	27, 261, 446, 509
BspTNI	GGTCTC	2 cut(s)	77, 694
BsrBI	CCGCTC	2 cut(s)	55, 1851
BsrDI	GCAATG	2 cut(s)	574, 1277
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	2 cut(s)	561, 1525
BsrI	ACTGG	3 cut(s)	667, 832, 1369
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	533, 908, 1023, 1236, 1432
BssMI	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	2 cut(s)	380, 1147
BssT1I	CCWWGG	1 cut(s)	1023
Bst2BI	CACGAG	2 cut(s)	380, 1147
Bst2UI	CCWGG	5 cut(s)	719, 909, 1238, 1287, 1739
Bst4CI	ACNGT	7 cut(s)	49, 501, 764, 1194, 1249, 1433, 1777
Bst6I	CTCTTC	6 cut(s)	24, 124, 428, 762, 1534, 1866
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	2 cut(s)	561, 1525
BstBI	TTCGAA	4 cut(s)	27, 261, 446, 509
BstC8I	GCNNGC	8 cut(s)	104, 441, 786, 790, 1394, 1439, 1611, 1878
BstDEI	CTNAG	7 cut(s)	165, 579, 693, 1170, 1305, 1614, 1847
BstDSI	CCRYGG	1 cut(s)	1432
BstF5I	GGATG	8 cut(s)	676, 745, 967, 1365, 1458, 1474, 1678, 1682
BstHHI	GCGC	1 cut(s)	1773
BstKTI	GATC	9 cut(s)	291, 349, 731, 1146, 1327, 1363, 1383, 1517, 1939
BstMAI	GTCTC	4 cut(s)	77, 193, 395, 694
BstMBI	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 781, 890, 1922
BstNI	CCWGG	5 cut(s)	719, 909, 1238, 1287, 1739
BstNSI	RCATGY	2 cut(s)	835, 1880
BstPAI	GACNNNNGTC	1 cut(s)	1460
BstSCI	CCNGG	7 cut(s)	516, 532, 717, 907, 1236, 1285, 1737
BstSFI	CTRYAG	3 cut(s)	770, 1266, 1376
BstV1I	GCAGC	5 cut(s)	118, 784, 942, 1240, 1970
BstX2I	RGATCY	2 cut(s)	728, 1380
BstYI	RGATCY	2 cut(s)	728, 1380
BsuI	GTATCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	1432
BtrI	CACGTC	1 cut(s)	905
BtsCI	GGATG	8 cut(s)	676, 745, 967, 1365, 1458, 1474, 1678, 1682
BtsIMutI	CAGTG	2 cut(s)	1190, 1773
BveI	ACCTGC	1 cut(s)	1432
Cac8I	GCNNGC	8 cut(s)	104, 441, 786, 790, 1394, 1439, 1611, 1878
CaiI	CAGNNNCTG	2 cut(s)	1253, 1931
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	1 cut(s)	1773
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	1027, 1333, 1429
CseI	GACGC	2 cut(s)	148, 563
CspAI	ACCGGT	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	1414, 1449
CviAII	CATG	6 cut(s)	658, 832, 947, 1322, 1797, 1877
DdeI	CTNAG	7 cut(s)	165, 579, 693, 1170, 1305, 1614, 1847
DpnI	GATC	9 cut(s)	290, 348, 730, 1145, 1326, 1362, 1382, 1516, 1938
DpnII	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
Eam1104I	CTCTTC	6 cut(s)	24, 124, 428, 762, 1534, 1866
EarI	CTCTTC	6 cut(s)	24, 124, 428, 762, 1534, 1866
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	3 cut(s)	10, 217, 343
Eco130I	CCWWGG	1 cut(s)	1023
Eco24I	GRGCYC	3 cut(s)	12, 219, 345
Eco31I	GGTCTC	2 cut(s)	77, 694
Eco47I	GGWCC	3 cut(s)	1027, 1333, 1429
Eco53kI	GAGCTC	3 cut(s)	10, 217, 343
Eco57I	CTGAAG	3 cut(s)	5, 657, 1121
EcoICRI	GAGCTC	3 cut(s)	10, 217, 343
EcoRII	CCWGG	5 cut(s)	717, 907, 1236, 1285, 1737
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT38I	GRGCYC	3 cut(s)	12, 219, 345
ErhI	CCWWGG	1 cut(s)	1023
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	6 cut(s)	661, 835, 950, 1325, 1800, 1880
FaqI	GGGAC	2 cut(s)	426, 1219
FatI	CATG	6 cut(s)	657, 831, 946, 1321, 1796, 1876
FbaI	TGATCA	4 cut(s)	1143, 1324, 1360, 1936
Fnu4HI	GCNGC	6 cut(s)	107, 183, 773, 956, 1254, 1959
FokI	GGATG	8 cut(s)	683, 752, 974, 1352, 1465, 1481, 1665, 1669
FriOI	GRGCYC	3 cut(s)	12, 219, 345
Fsp4HI	GCNGC	6 cut(s)	107, 183, 773, 956, 1254, 1959
FspBI	CTAG	1 cut(s)	1181
FspI	TGCGCA	1 cut(s)	1772
GlaI	GCGC	1 cut(s)	1772
GluI	GCNGC	6 cut(s)	107, 183, 773, 956, 1254, 1959
GsaI	CCCAGC	1 cut(s)	413
HapII	CCGG	7 cut(s)	87, 93, 147, 338, 518, 533, 808
HgaI	GACGC	2 cut(s)	148, 563
HhaI	GCGC	1 cut(s)	1773
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	661, 835, 950, 1325, 1800, 1880
Hin6I	GCGC	1 cut(s)	1771
HinP1I	GCGC	1 cut(s)	1771
HinfI	GANTC	7 cut(s)	143, 258, 283, 475, 593, 1067, 1082
HpaII	CCGG	7 cut(s)	87, 93, 147, 338, 518, 533, 808
HphI	GGTGA	3 cut(s)	442, 497, 1370
Hpy166II	GTNNAC	1 cut(s)	1735
Hpy188I	TCNGA	8 cut(s)	80, 245, 257, 277, 288, 1081, 1101, 1897
Hpy8I	GTNNAC	1 cut(s)	1735
Hpy99I	CGWCG	3 cut(s)	68, 158, 197
HpyCH4III	ACNGT	7 cut(s)	49, 501, 764, 1194, 1249, 1433, 1777
HpyCH4IV	ACGT	3 cut(s)	904, 985, 1457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 781, 890, 1922
HpyF3I	CTNAG	7 cut(s)	165, 579, 693, 1170, 1305, 1614, 1847
HpySE526I	ACGT	3 cut(s)	904, 985, 1457
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	661, 835, 950, 1325, 1800, 1880
HspAI	GCGC	1 cut(s)	1771
Kpn2I	TCCGGA	2 cut(s)	92, 337
Ksp22I	TGATCA	4 cut(s)	1143, 1324, 1360, 1936
Kzo9I	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
LguI	GCTCTTC	1 cut(s)	1866
LmnI	GCTCC	5 cut(s)	7, 15, 214, 340, 952
Lsp1109I	GCAGC	5 cut(s)	118, 784, 942, 1240, 1970
LweI	GCATC	8 cut(s)	159, 730, 952, 1084, 1111, 1405, 1687, 1903
MaeI	CTAG	1 cut(s)	1181
MaeII	ACGT	3 cut(s)	904, 985, 1457
MaeIII	GTNAC	3 cut(s)	160, 1801, 1918
MalI	GATC	9 cut(s)	290, 348, 730, 1145, 1326, 1362, 1382, 1516, 1938
MbiI	CCGCTC	2 cut(s)	55, 1851
MboI	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
MflI	RGATCY	2 cut(s)	728, 1380
MhlI	GDGCHC	4 cut(s)	12, 104, 219, 345
MluCI	AATT	8 cut(s)	360, 448, 511, 855, 969, 978, 1715, 1723
MlyI	GAGTC	4 cut(s)	137, 277, 469, 602
MmeI	TCCRAC	1 cut(s)	223
MroI	TCCGGA	2 cut(s)	92, 337
MroXI	GAANNNNTTC	3 cut(s)	849, 1891, 1971
MseI	TTAA	4 cut(s)	627, 1205, 1656, 1824
MspI	CCGG	7 cut(s)	87, 93, 147, 338, 518, 533, 808
MspR9I	CCNGG	7 cut(s)	518, 534, 719, 909, 1238, 1287, 1739
MvaI	CCWGG	5 cut(s)	719, 909, 1238, 1287, 1739
MwoI	GCNNNNNNNGC	4 cut(s)	156, 781, 890, 1922
NciI	CCSGG	2 cut(s)	518, 534
NdeII	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
NlaIII	CATG	6 cut(s)	661, 835, 950, 1325, 1800, 1880
NlaIV	GGNNCC	3 cut(s)	59, 91, 633
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	160
NsbI	TGCGCA	1 cut(s)	1772
NspI	RCATGY	2 cut(s)	835, 1880
NspV	TTCGAA	4 cut(s)	27, 261, 446, 509
PaeI	GCATGC	1 cut(s)	1880
PagI	TCATGA	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	1866
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PdmI	GAANNNNTTC	3 cut(s)	849, 1891, 1971
PfeI	GAWTC	3 cut(s)	258, 1067, 1082
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	6 cut(s)	108, 184, 774, 957, 1255, 1960
PleI	GAGTC	4 cut(s)	137, 277, 469, 601
PpsI	GAGTC	4 cut(s)	137, 277, 469, 601
PshAI	GACNNNNGTC	1 cut(s)	1460
PsiI	TTATAA	1 cut(s)	1566
Psp124BI	GAGCTC	3 cut(s)	12, 219, 345
Psp1406I	AACGTT	1 cut(s)	985
Psp6I	CCWGG	5 cut(s)	717, 907, 1236, 1285, 1737
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	5 cut(s)	717, 907, 1236, 1285, 1737
PspN4I	GGNNCC	3 cut(s)	59, 91, 633
PspPI	GGNCC	3 cut(s)	1027, 1333, 1429
PstI	CTGCAG	2 cut(s)	774, 1270
PstNI	CAGNNNCTG	2 cut(s)	1253, 1931
PsuI	RGATCY	2 cut(s)	728, 1380
SacI	GAGCTC	3 cut(s)	12, 219, 345
SapI	GCTCTTC	1 cut(s)	1866
SaqAI	TTAA	4 cut(s)	627, 1205, 1656, 1824
SatI	GCNGC	6 cut(s)	107, 183, 773, 956, 1254, 1959
Sau3AI	GATC	9 cut(s)	288, 346, 728, 1143, 1324, 1360, 1380, 1514, 1936
Sau96I	GGNCC	3 cut(s)	1027, 1333, 1429
ScaI	AGTACT	3 cut(s)	296, 353, 1303
SchI	GAGTC	4 cut(s)	137, 277, 469, 602
ScrFI	CCNGG	7 cut(s)	518, 534, 719, 909, 1238, 1287, 1739
SduI	GDGCHC	4 cut(s)	12, 104, 219, 345
SfaNI	GCATC	8 cut(s)	159, 730, 952, 1084, 1111, 1405, 1687, 1903
SfcI	CTRYAG	3 cut(s)	770, 1266, 1376
SfuI	TTCGAA	4 cut(s)	27, 261, 446, 509
SinI	GGWCC	3 cut(s)	1027, 1333, 1429
SmlI	CTYRAG	2 cut(s)	590, 1573
SmoI	CTYRAG	2 cut(s)	590, 1573
SphI	GCATGC	1 cut(s)	1880
Sse9I	AATT	8 cut(s)	360, 448, 511, 855, 969, 978, 1715, 1723
SsiI	CCGC	4 cut(s)	5, 55, 183, 1851
SspI	AATATT	1 cut(s)	1891
SspMI	CTAG	1 cut(s)	1181
SstI	GAGCTC	3 cut(s)	12, 219, 345
StyD4I	CCNGG	7 cut(s)	516, 532, 717, 907, 1236, 1285, 1737
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	7 cut(s)	49, 501, 764, 1194, 1249, 1433, 1777
TaiI	ACGT	3 cut(s)	907, 988, 1460
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	8 cut(s)	360, 448, 511, 855, 969, 978, 1715, 1723
TatI	WGTACW	8 cut(s)	294, 351, 561, 813, 834, 1301, 1525, 1669
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	258, 1067, 1082
Tru1I	TTAA	4 cut(s)	627, 1205, 1656, 1824
Tru9I	TTAA	4 cut(s)	627, 1205, 1656, 1824
TscAI	CASTG	2 cut(s)	1197, 1780
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	5 cut(s)	106, 772, 955, 1253, 1958
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	434, 646, 1146, 1722
TspGWI	ACGGA	3 cut(s)	181, 413, 925
TspRI	CASTG	2 cut(s)	1197, 1780
VpaK11BI	GGWCC	3 cut(s)	1027, 1333, 1429
XapI	RAATTY	3 cut(s)	448, 978, 1715
XceI	RCATGY	2 cut(s)	835, 1880
XmnI	GAANNNNTTC	3 cut(s)	849, 1891, 1971
XspI	CTAG	1 cut(s)	1181
ZrmI	AGTACT	3 cut(s)	296, 353, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.