Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006297.1

Orthogroup ID

OG0018681

Physical Location & Seq

Genomic Coordinates Forward (+)

860 .. 2245

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006297.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcgaaggcgaagtcgaagtcgctgctccagtgctgcctcgaccacggcgtcaacttcttcgacaacgcggaggtctacgcgagcggccgcgccgaggagatcatgggccaggccatacgcgatctgggctggaagcgctccgacatcgtcgtctccaccaagatcagagatttagatcagaagactgagaattggggatcagacttcgttttgcggcttagggaccaaaagattcaaatcatcttgctcggcctattcccaccgccgatagctgatcaaacaccgctgttgcgtctcaatccaccttcatgcaccgcagatgcttctggttcctcccacttcaaatcttacagcaaattgaaattgtgcattgaggcttcgccgatcactccaagttcatccccgccgtcgacgacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

140

Amino Acids

15.39

Weight (kDa)

8.38

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018681)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001258.1_g000008 Rmu_sc0006297.1_g000002 Rmu_sc0012167.1_g000005 Rmu_sc0036149.1_g000002
rosa_roxburghii	Rroxscaffold_5G00349420
rosa_samantha	Rh2AG390800 Rh3DG313700 Rh6AG076100 Rh6AG076400 Rh6DG096800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	50, 152
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	78, 413
AccII	CGCG	4 cut(s)	71, 83, 93, 123
AciI	CCGC	8 cut(s)	71, 87, 91, 217, 266, 287, 318, 407
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	51
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	239, 346, 364
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	160, 302
AlwI	GGATC	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	4 cut(s)	88, 109, 114, 253
ApeKI	GCWGC	2 cut(s)	25, 36
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 37
AspLEI	GCGC	2 cut(s)	95, 141
AspS9I	GGNCC	2 cut(s)	109, 226
AvaII	GGWCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	12, 23
BceAI	ACGGC	2 cut(s)	64, 394
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	160, 302
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	5 cut(s)	26, 37, 88, 91, 218
BlsI	GCNGC	5 cut(s)	27, 38, 89, 92, 219
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	109, 226
BmiI	GGNNCC	2 cut(s)	227, 334
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	221
BsaBI	GATNNNNATC	2 cut(s)	177, 239
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	46, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	2 cut(s)	177, 239
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	46, 96
BseGI	GGATG	1 cut(s)	401
BseJI	GATNNNNATC	2 cut(s)	177, 239
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	12, 23
Bsh1236I	CGCG	4 cut(s)	71, 83, 93, 123
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	90, 111, 116, 255
BsiEI	CGRYCG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	160, 302
BsmBI	CGTCTC	2 cut(s)	160, 302
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	4 cut(s)	90, 111, 116, 255
Bsp143I	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
BspACI	CCGC	8 cut(s)	71, 87, 91, 217, 266, 287, 318, 407
BspANI	GGCC	4 cut(s)	90, 111, 116, 255
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	4 cut(s)	71, 83, 93, 123
BspLI	GGNNCC	2 cut(s)	227, 334
BspPI	GGATC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	46, 96
BssMI	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	189, 221, 420
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	4 cut(s)	71, 83, 93, 123
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	95, 141
BstKTI	GATC	7 cut(s)	105, 127, 168, 181, 203, 280, 390
BstMAI	GTCTC	2 cut(s)	160, 302
BstMBI	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 138
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	4 cut(s)	71, 83, 93, 123
BstV1I	GCAGC	2 cut(s)	12, 23
BstV2I	GAAGAC	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	90, 111, 116, 255
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	85
CciNI	GCGGCCGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	95, 141
Cfr13I	GGNCC	2 cut(s)	109, 226
CseI	GACGC	2 cut(s)	40, 284
CviAII	CATG	2 cut(s)	106, 312
CviJI	RGCY	8 cut(s)	90, 111, 116, 132, 220, 255, 275, 380
CviKI_1	RGCY	8 cut(s)	90, 111, 116, 132, 220, 255, 275, 380
DdeI	CTNAG	3 cut(s)	189, 221, 420
DpnI	GATC	7 cut(s)	104, 126, 167, 180, 202, 279, 389
DpnII	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
DrdI	GACNNNNNNGTC	2 cut(s)	50, 152
DseDI	GACNNNNNNGTC	2 cut(s)	50, 152
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	226
Eco47III	AGCGCT	1 cut(s)	140
Eco52I	CGGCCG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	160, 302
FaeI	CATG	2 cut(s)	109, 315
FaiI	YATR	3 cut(s)	107, 119, 313
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	105, 311
FauI	CCCGC	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	2 cut(s)	78, 413
Fnu4HI	GCNGC	5 cut(s)	26, 37, 88, 91, 218
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	26, 37, 88, 91, 218
GlaI	GCGC	2 cut(s)	94, 140
GluI	GCNGC	5 cut(s)	26, 37, 88, 91, 218
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	90, 111, 116, 255
HgaI	GACGC	2 cut(s)	40, 284
HhaI	GCGC	2 cut(s)	95, 141
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	109, 315
Hin6I	GCGC	2 cut(s)	93, 139
HinP1I	GCGC	2 cut(s)	93, 139
HincII	GTYRAC	2 cut(s)	55, 414
HindII	GTYRAC	2 cut(s)	55, 414
HinfI	GANTC	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	55, 79, 414
Hpy188I	TCNGA	4 cut(s)	145, 170, 183, 205
Hpy8I	GTNNAC	3 cut(s)	55, 79, 414
Hpy99I	CGWCG	3 cut(s)	155, 415, 418
HpyAV	CCTTC	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	315, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 138
HpyF3I	CTNAG	3 cut(s)	189, 221, 420
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	109, 315
HspAI	GCGC	2 cut(s)	93, 139
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
LmnI	GCTCC	2 cut(s)	33, 146
LpnPI	CCDG	6 cut(s)	44, 98, 113, 118, 125, 315
Lsp1109I	GCAGC	2 cut(s)	12, 23
LweI	GCATC	1 cut(s)	313
MalI	GATC	7 cut(s)	104, 126, 167, 180, 202, 279, 389
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
MboII	GAAGA	2 cut(s)	52, 196
MluCI	AATT	3 cut(s)	193, 359, 365
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	50, 67, 91, 346, 370
MslI	CAYNNNNRTG	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	4 cut(s)	71, 83, 93, 123
MwoI	GCNNNNNNNGC	2 cut(s)	129, 138
NdeII	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
NlaIII	CATG	2 cut(s)	109, 315
NlaIV	GGNNCC	2 cut(s)	227, 334
NmeAIII	GCCGAG	2 cut(s)	121, 231
NotI	GCGGCCGC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	5 cut(s)	27, 38, 89, 92, 219
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	227, 334
PspPI	GGNCC	2 cut(s)	109, 226
PsyI	GACNNNGTC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	412
SatI	GCNGC	5 cut(s)	26, 37, 88, 91, 218
Sau3AI	GATC	7 cut(s)	102, 124, 165, 178, 200, 277, 387
Sau96I	GGNCC	2 cut(s)	109, 226
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	3 cut(s)	78, 277, 310
SfaNI	GCATC	1 cut(s)	313
SgrDI	CGTCGACG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	193, 359, 365
SsiI	CCGC	8 cut(s)	71, 87, 91, 217, 266, 287, 318, 407
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	4 cut(s)	17, 42, 63, 413
TasI	AATT	3 cut(s)	193, 359, 365
TauI	GCSGC	3 cut(s)	90, 93, 220
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	2 cut(s)	25, 36
TspDTI	ATGAA	2 cut(s)	300, 390
TspRI	CASTG	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	78, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.