Rh6DG096800

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018681
Physical Location & Seq
Forward (+)
12139617 .. 12141692
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG096800.1

Sequence Viewer

Length: 438 bp
ATGCTGCGGTCGCCGAGAAAGAGGTCGCCGATACGCCCGATGAGGAATTCCAGTACCAAGCCGAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACACATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATGCTGGTATTGGGATGATGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTTACGGCTCTGAAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTGAGTAATGAGTTCCACAGTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

145

Amino Acids

16.48

Weight (kDa)

5.21

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 98 - 139 2.3e-06 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 173
AciI CCGC 1 cut(s) 7
AcsI RAATTY 2 cut(s) 46, 266
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 3 cut(s) 55, 241, 259
AfiI CCNNNNNNNGG 2 cut(s) 173, 311
AgsI TTSAA 2 cut(s) 264, 290
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 4, 121, 142
ApoI RAATTY 2 cut(s) 46, 266
Asp718I GGTACC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 347, 421
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 108, 129
BceAI ACGGC 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 143
BisI GCNGC 3 cut(s) 5, 122, 143
BlsI GCNGC 3 cut(s) 6, 123, 144
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 3 cut(s) 67, 121, 184
BpiI GAAGAC 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 311
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 199, 213
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 173, 311
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 102, 263, 351
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 108, 129
Bsh1285I CGRYCG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 173, 311
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 117
BspACI CCGC 1 cut(s) 7
BspCNI CTCAG 3 cut(s) 103, 262, 352
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 111, 249, 360
BstF5I GGATG 2 cut(s) 199, 213
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 10, 77, 121
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 108, 129
BstV2I GAAGAC 1 cut(s) 356
BtsCI GGATG 2 cut(s) 199, 213
Csp6I GTAC 3 cut(s) 54, 240, 258
CviJI RGCY 7 cut(s) 61, 115, 142, 278, 328, 386, 400
CviKI_1 RGCY 7 cut(s) 61, 115, 142, 278, 328, 386, 400
CviQI GTAC 3 cut(s) 54, 240, 258
DdeI CTNAG 3 cut(s) 111, 249, 360
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 235
FaiI YATR 4 cut(s) 188, 356, 404, 406
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 5, 122, 143
FokI GGATG 2 cut(s) 206, 220
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 5, 122, 143
GluI GCNGC 3 cut(s) 5, 122, 143
HphI GGTGA 2 cut(s) 347, 421
Hpy188I TCNGA 2 cut(s) 252, 282
HpyAV CCTTC 3 cut(s) 208, 277, 305
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 71, 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 77, 121
HpyF3I CTNAG 3 cut(s) 111, 249, 360
KpnI GGTACC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 64, 180, 183, 342
Lsp1109I GCAGC 2 cut(s) 108, 129
LweI GCATC 3 cut(s) 67, 121, 184
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 5 cut(s) 302, 311, 329, 352, 361
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 46, 266, 380
MnlI CCTC 7 cut(s) 15, 36, 127, 211, 286, 289, 325
MwoI GCNNNNNNNGC 3 cut(s) 10, 77, 121
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 2 cut(s) 39, 87
NmuCI GTSAC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 3 cut(s) 6, 123, 144
PspN4I GGNNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 147
RsaI GTAC 3 cut(s) 55, 241, 259
RsaNI GTAC 3 cut(s) 54, 240, 258
SatI GCNGC 3 cut(s) 5, 122, 143
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 26, 144, 288
SfaNI GCATC 3 cut(s) 67, 121, 184
SfcI CTRYAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 46, 266, 380
SsiI CCGC 1 cut(s) 7
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 428
TasI AATT 3 cut(s) 46, 266, 380
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 4, 121, 142
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 227, 405
TspGWI ACGGA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 46, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.