Rmu_sc0036149.1_g000002

voltage-gated potassium channel subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036149.1
OG0018681
Physical Location & Seq
Forward (+)
1404 .. 1739
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036149.1_g000002.1.cds

Sequence Viewer

Length: 336 bp
atgatttacaacaatctgggccggtcggggctgaaggtgagtcagctgtcgtacggcgcgtcggtgagcttcgggaaccagctggacgtgaaggaggcgaagtcgctgctccagtgctgccgcgaccacggcgtcaacttcttcgacaacgcggaggtctacgccagcggccgcgccgaggagatcatgggccaggccatatgcgagctaggctggaagcgctccgacatcgtcgtctccaccaaggttagagatttagatgaagaacataaatctatctggagagtggaaaagactcgaagagaagtgaattggggatcagaagatcttcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

111

Amino Acids

12.63

Weight (kDa)

6.11

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 233
AccI GTMKAC 1 cut(s) 159
AccII CGCG 4 cut(s) 59, 123, 152, 174
AciI CCGC 4 cut(s) 121, 152, 168, 172
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 53
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 178
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 4 cut(s) 46, 69, 82, 208
AluI AGCT 4 cut(s) 46, 69, 82, 208
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 325
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 4 cut(s) 19, 169, 190, 195
ApeKI GCWGC 2 cut(s) 106, 117
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 3 cut(s) 59, 176, 222
AspS9I GGNCC 2 cut(s) 19, 190
AsuHPI GGTGA 2 cut(s) 49, 76
BbvI GCAGC 2 cut(s) 93, 104
BceAI ACGGC 2 cut(s) 70, 145
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 223
BglII AGATCT 1 cut(s) 325
BisI GCNGC 5 cut(s) 107, 118, 121, 169, 172
BlsI GCNGC 5 cut(s) 108, 119, 122, 170, 173
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 19, 190
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 95, 301
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 127, 177, 243
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 127, 177, 243
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 93, 104
Bsh1236I CGCG 4 cut(s) 59, 123, 152, 174
Bsh1285I CGRYCG 2 cut(s) 26, 172
BshFI GGCC 4 cut(s) 21, 171, 192, 197
BsiEI CGRYCG 2 cut(s) 26, 172
BsiSI CCGG 1 cut(s) 22
BsiWI CGTACG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsnI GGCC 4 cut(s) 21, 171, 192, 197
Bsp143I GATC 3 cut(s) 183, 317, 325
BspACI CCGC 4 cut(s) 121, 152, 168, 172
BspANI GGCC 4 cut(s) 21, 171, 192, 197
BspFNI CGCG 4 cut(s) 59, 123, 152, 174
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 127, 177, 243
BssMI GATC 3 cut(s) 183, 317, 325
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 166, 206
BstDSI CCRYGG 1 cut(s) 127
BstFNI CGCG 4 cut(s) 59, 123, 152, 174
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 3 cut(s) 59, 176, 222
BstKTI GATC 3 cut(s) 186, 320, 328
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 183, 317, 325
BstMCI CGRYCG 2 cut(s) 26, 172
BstMWI GCNNNNNNNGC 3 cut(s) 129, 210, 219
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstUI CGCG 4 cut(s) 59, 123, 152, 174
BstV1I GCAGC 2 cut(s) 93, 104
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 4 cut(s) 21, 171, 192, 197
BtgI CCRYGG 1 cut(s) 127
BtrI CACGTC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 166, 206
CciNI GCGGCCGC 1 cut(s) 169
CfoI GCGC 3 cut(s) 59, 176, 222
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 19, 190
CseI GACGC 2 cut(s) 48, 121
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 187
CviQI GTAC 1 cut(s) 52
DpnI GATC 3 cut(s) 185, 319, 327
DpnII GATC 3 cut(s) 183, 317, 325
DrdI GACNNNNNNGTC 2 cut(s) 131, 233
DseDI GACNNNNNNGTC 2 cut(s) 131, 233
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 188, 200, 202, 270
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 200
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 107, 118, 121, 169, 172
Fsp4HI GCNGC 5 cut(s) 107, 118, 121, 169, 172
FspBI CTAG 1 cut(s) 209
GlaI GCGC 3 cut(s) 58, 175, 221
GluI GCNGC 5 cut(s) 107, 118, 121, 169, 172
GsuI CTGGAG 2 cut(s) 95, 301
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 4 cut(s) 21, 171, 192, 197
HapII CCGG 1 cut(s) 22
HgaI GACGC 2 cut(s) 48, 121
HhaI GCGC 3 cut(s) 59, 176, 222
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 3 cut(s) 57, 174, 220
HinP1I GCGC 3 cut(s) 57, 174, 220
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 40, 295
HpaII CCGG 1 cut(s) 22
HphI GGTGA 2 cut(s) 49, 76
Hpy166II GTNNAC 2 cut(s) 136, 160
Hpy188I TCNGA 2 cut(s) 226, 322
Hpy188III TCNNGA 2 cut(s) 73, 280
Hpy8I GTNNAC 2 cut(s) 136, 160
Hpy99I CGWCG 2 cut(s) 64, 236
HpyAV CCTTC 2 cut(s) 28, 85
HpyCH4IV ACGT 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 210, 219
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 3 cut(s) 57, 174, 220
Kzo9I GATC 3 cut(s) 183, 317, 325
LmnI GCTCC 2 cut(s) 114, 227
Lsp1109I GCAGC 2 cut(s) 93, 104
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 87
MalI GATC 3 cut(s) 185, 319, 327
MboI GATC 3 cut(s) 183, 317, 325
MboII GAAGA 5 cut(s) 133, 275, 312, 320, 335
MflI RGATCY 1 cut(s) 325
MluCI AATT 1 cut(s) 310
MlyI GAGTC 2 cut(s) 49, 289
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 88, 148, 172
MroXI GAANNNNTTC 1 cut(s) 327
MspA1I CMGCKG 3 cut(s) 46, 82, 168
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 4 cut(s) 59, 123, 152, 174
MwoI GCNNNNNNNGC 3 cut(s) 129, 210, 219
NdeI CATATG 1 cut(s) 200
NdeII GATC 3 cut(s) 183, 317, 325
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 202
NotI GCGGCCGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 327
Pfl23II CGTACG 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 5 cut(s) 108, 119, 122, 170, 173
PleI GAGTC 2 cut(s) 48, 289
PpsI GAGTC 2 cut(s) 48, 289
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 19, 190
PsuI RGATCY 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 46, 82
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SatI GCNGC 5 cut(s) 107, 118, 121, 169, 172
Sau3AI GATC 3 cut(s) 183, 317, 325
Sau96I GGNCC 2 cut(s) 19, 190
SchI GAGTC 2 cut(s) 49, 289
ScrFI CCNGG 1 cut(s) 194
SetI ASST 8 cut(s) 39, 48, 71, 84, 90, 159, 210, 249
Sse9I AATT 1 cut(s) 310
SsiI CCGC 4 cut(s) 121, 152, 168, 172
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 144, 298
TasI AATT 1 cut(s) 310
TauI GCSGC 3 cut(s) 123, 171, 174
TscAI CASTG 1 cut(s) 119
TseI GCWGC 2 cut(s) 106, 117
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 119
Tth111I GACNNNGTC 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.