Rh2AG390800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018681
Physical Location & Seq
Reverse (-)
58637237 .. 58639515
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG390800.1

Sequence Viewer

Length: 339 bp
ATGACCCGGATGGAGCCTTCGCTGATACGGCTTTCGATGCCAATCACTGTCGTGCAATCCGTCTGTCTCTATTTTCCTCACAATTTCATACTCGTCGCGACATTCAATCTATCGCCAAGAAAGAGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTTACAAGCAATAATCCAGGTTGCCATTAACGTCGTCTTTGTTGCCGAGTATTGCCTGTACGTGTCTAATTCTGACCTCGAAAAGGCCATATTAAGGACGTTGGCCAAAGGTGCAGCAACATTTCTAAGCTTTACAGGAGTTCTATACATTGAAGAAACCAGCTATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

9.75

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 2 cut(s) 157, 227
AfiI CCNNNNNNNGG 3 cut(s) 165, 250, 261
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 106, 320
AjnI CCWGG 1 cut(s) 183
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 2 cut(s) 297, 330
AluI AGCT 2 cut(s) 297, 330
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 2 cut(s) 252, 270
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 148
AsuC2I CCSGG 2 cut(s) 7, 140
AsuHPI GGTGA 1 cut(s) 154
BalI TGGCCA 1 cut(s) 272
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 7, 140
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 7, 140, 185
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 7, 140, 185
BmsI GCATC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 7, 140
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 250, 261
Bse1I ACTGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 165, 250, 261
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 254, 272
BsiSI CCGG 2 cut(s) 7, 140
BslI CCNNNNNNNGG 3 cut(s) 165, 250, 261
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 254, 272
Bsp68I TCGCGA 1 cut(s) 98
BspANI GGCC 2 cut(s) 254, 272
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 28, 37, 278
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 5, 138, 183
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 254, 272
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 45
BtuMI TCGCGA 1 cut(s) 98
Csp6I GTAC 2 cut(s) 156, 226
CviJI RGCY 7 cut(s) 16, 31, 163, 254, 272, 297, 330
CviKI_1 RGCY 7 cut(s) 16, 31, 163, 254, 272, 297, 330
CviQI GTAC 2 cut(s) 156, 226
DdeI CTNAG 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 183
FaiI YATR 3 cut(s) 89, 257, 313
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 254, 272
HapII CCGG 2 cut(s) 7, 140
HindIII AAGCTT 1 cut(s) 295
HpaII CCGG 2 cut(s) 7, 140
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 97, 336
Hpy99I CGWCG 2 cut(s) 98, 203
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 3 cut(s) 198, 228, 266
HpyCH4V TGCA 2 cut(s) 55, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 37, 278
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 3 cut(s) 198, 228, 266
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 7 cut(s) 20, 153, 166, 170, 197, 236, 288
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 27
MaeII ACGT 3 cut(s) 198, 228, 266
MaeIII GTNAC 1 cut(s) 168
MboII GAAGA 1 cut(s) 332
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 3 cut(s) 82, 148, 235
MluNI TGGCCA 1 cut(s) 272
MnlI CCTC 5 cut(s) 87, 117, 138, 159, 254
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 2 cut(s) 195, 260
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 2 cut(s) 7, 140
MspR9I CCNGG 3 cut(s) 7, 140, 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 28, 37, 278
NciI CCSGG 2 cut(s) 7, 140
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 2 cut(s) 189, 238
NruI TCGCGA 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 15
RruI TCGCGA 1 cut(s) 98
RsaI GTAC 2 cut(s) 157, 227
RsaNI GTAC 2 cut(s) 156, 226
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 195, 260
SatI GCNGC 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 7, 140, 185
SfaNI GCATC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 3 cut(s) 82, 148, 235
StyD4I CCNGG 3 cut(s) 5, 138, 183
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 3 cut(s) 201, 231, 269
TaqI TCGA 2 cut(s) 35, 246
TasI AATT 3 cut(s) 82, 148, 235
Tru1I TTAA 2 cut(s) 195, 260
Tru9I TTAA 2 cut(s) 195, 260
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.