Rroxscaffold_5G00349420

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018681
Physical Location & Seq
Reverse (-)
22411287 .. 22428007
16721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349420.1

Sequence Viewer

Length: 654 bp
ATGCTGCGGTCGCCGAGAAATAGGTCGCCGATACACCCGGTGAGGAATTCCGGTACCAAGCCGAGTAAAGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGGACCGAGCCCTCGGCTGCTTGGAGATCTTTGTTGAGCTGAGATATGCATCAAACCCGACCCGAGAGAATGGGACTATCACTATAACGGATACCGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCGAGTGCCGGATGACAAGTATGAGTTCTCGAGAGACTGCTCGGATCCGAGTTTGGTAAAGAATTACTTGCAATTTGTTTCTTTGCCCATCTACACATGGCAAGAGAATCAATTAGCATTTTCGCCAGTACTAAGTTCAAACTTTTGGCAGGTTGAAGAGGAGGAAGAACCAAAGCCAGAGCTCTTGGTGTTTGGTTTGAGGGACAAGAAAATTGGAGGAGATGAGGGGATTCAAATCATCTTGCTCGTCCGATTCCCACCGCCGCCGCGTCTCAATCCGCCTTCATGCACCACGGATGTTTCTGGTTCTCCCAACTTCAAATCCTATAGCAAATTGAAATTGTGCATTGAGGCTTCACCGCACACTCCGAGTTCATCCCCGCCGCCGTCGCCAATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

217

Amino Acids

24.18

Weight (kDa)

5.8

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
Acc65I GGTACC 2 cut(s) 53, 242
AccB1I GGYRCC 2 cut(s) 53, 242
AccII CGCG 1 cut(s) 520
AciI CCGC 8 cut(s) 7, 512, 515, 518, 530, 611, 632, 635
AclWI GGATC 2 cut(s) 290, 303
AcsI RAATTY 1 cut(s) 46
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 3 cut(s) 55, 244, 381
AfiI CCNNNNNNNGG 1 cut(s) 207
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 5 cut(s) 390, 407, 485, 571, 589
AluBI AGCT 2 cut(s) 145, 433
AluI AGCT 2 cut(s) 145, 433
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 2 cut(s) 279, 527
AlwI GGATC 2 cut(s) 290, 303
Ama87I CYCGRG 3 cut(s) 168, 252, 280
ApeKI GCWGC 2 cut(s) 4, 123
ApoI RAATTY 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 200
Asp718I GGTACC 2 cut(s) 53, 242
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 52, 600
AvaI CYCGRG 3 cut(s) 168, 252, 280
AvaII GGWCC 1 cut(s) 109
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 2 cut(s) 53, 242
BanII GRGCYC 2 cut(s) 118, 435
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 622
BciVI GTATCC 1 cut(s) 190
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 279, 527
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 1 cut(s) 190
BglII AGATCT 1 cut(s) 132
BisI GCNGC 5 cut(s) 5, 124, 515, 518, 635
BlsI GCNGC 5 cut(s) 6, 125, 516, 519, 636
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 3 cut(s) 168, 252, 280
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 55, 244, 297
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 67, 164
BpuMI CCSGG 1 cut(s) 38
BsaBI GATNNNNATC 2 cut(s) 154, 485
BsaJI CCNNGG 3 cut(s) 118, 238, 543
BsaWI WCCGGW 2 cut(s) 50, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 2 cut(s) 154, 485
BseDI CCNNGG 3 cut(s) 118, 238, 543
BseGI GGATG 4 cut(s) 216, 268, 553, 626
BseJI GATNNNNATC 2 cut(s) 154, 485
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 425, 483
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 520
Bsh1285I CGRYCG 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 53, 242
BshTI ACCGGT 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 3 cut(s) 168, 252, 280
BsiSI CCGG 4 cut(s) 38, 51, 201, 260
BslFI GGGAC 2 cut(s) 193, 467
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 279, 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 2 cut(s) 193, 467
BsoBI CYCGRG 3 cut(s) 168, 252, 280
Bsp1286I GDGCHC 2 cut(s) 118, 435
Bsp143I GATC 2 cut(s) 132, 295
BspACI CCGC 8 cut(s) 7, 512, 515, 518, 530, 611, 632, 635
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 55, 244, 297
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 290, 303
BspT107I GGYRCC 2 cut(s) 53, 242
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 118, 238, 543
BssMI GATC 2 cut(s) 132, 295
BssT1I CCWWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 146, 383
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 4 cut(s) 216, 268, 553, 626
BstFNI CGCG 1 cut(s) 520
BstKTI GATC 2 cut(s) 135, 298
BstMAI GTCTC 2 cut(s) 279, 527
BstMBI GATC 2 cut(s) 132, 295
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 10, 77, 640
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 132, 295
BstYI RGATCY 2 cut(s) 132, 295
BsuI GTATCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 4 cut(s) 216, 268, 553, 626
BveI ACCTGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 509
Csp6I GTAC 3 cut(s) 54, 243, 380
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 2 cut(s) 348, 537
CviJI RGCY 7 cut(s) 61, 116, 123, 145, 427, 433, 605
CviKI_1 RGCY 7 cut(s) 61, 116, 123, 145, 427, 433, 605
CviQI GTAC 3 cut(s) 54, 243, 380
DdeI CTNAG 2 cut(s) 146, 383
DpnI GATC 2 cut(s) 134, 297
DpnII GATC 2 cut(s) 132, 295
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 118, 435
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 433
Eco88I CYCGRG 3 cut(s) 168, 252, 280
EcoICRI GAGCTC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 118, 435
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 2 cut(s) 351, 540
FaiI YATR 6 cut(s) 153, 191, 273, 349, 538, 579
FalI AAGNNNNNCTT 4 cut(s) 64, 96, 302, 334
FaqI GGGAC 2 cut(s) 193, 467
FatI CATG 2 cut(s) 347, 536
FauI CCCGC 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 5, 124, 515, 518, 635
FokI GGATG 4 cut(s) 223, 275, 560, 613
FriOI GRGCYC 2 cut(s) 118, 435
Fsp4HI GCNGC 5 cut(s) 5, 124, 515, 518, 635
GluI GCNGC 5 cut(s) 5, 124, 515, 518, 635
HapII CCGG 4 cut(s) 38, 51, 201, 260
HgaI GACGC 1 cut(s) 509
Hin1II CATG 2 cut(s) 351, 540
HinfI GANTC 3 cut(s) 358, 481, 504
HpaII CCGG 4 cut(s) 38, 51, 201, 260
HphI GGTGA 2 cut(s) 52, 600
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 295, 300, 503, 621
Hpy188III TCNNGA 2 cut(s) 280, 282
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 643
HpyAV CCTTC 2 cut(s) 211, 543
HpyCH4V TGCA 4 cut(s) 155, 322, 540, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 77, 640
HpyF3I CTNAG 2 cut(s) 146, 383
Hsp92II CATG 2 cut(s) 351, 540
KpnI GGTACC 2 cut(s) 57, 246
Kzo9I GATC 2 cut(s) 132, 295
LpnPI CCDG 8 cut(s) 51, 64, 214, 273, 386, 390, 441, 540
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 2 cut(s) 67, 164
MalI GATC 2 cut(s) 134, 297
MboI GATC 2 cut(s) 132, 295
MboII GAAGA 2 cut(s) 419, 428
MflI RGATCY 2 cut(s) 132, 295
MhlI GDGCHC 2 cut(s) 118, 435
MluCI AATT 7 cut(s) 46, 313, 323, 362, 462, 584, 590
MnlI CCTC 9 cut(s) 36, 128, 214, 403, 406, 444, 461, 469, 595
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 652
MspI CCGG 4 cut(s) 38, 51, 201, 260
MspR9I CCNGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 520
MwoI GCNNNNNNNGC 3 cut(s) 10, 77, 640
NciI CCSGG 1 cut(s) 38
NdeII GATC 2 cut(s) 132, 295
NlaIII CATG 2 cut(s) 351, 540
NlaIV GGNNCC 3 cut(s) 55, 244, 297
NmeAIII GCCGAG 3 cut(s) 39, 87, 99
NsiI ATGCAT 1 cut(s) 157
PaeR7I CTCGAG 2 cut(s) 252, 280
PfeI GAWTC 3 cut(s) 358, 481, 504
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 5 cut(s) 6, 125, 516, 519, 636
Psp124BI GAGCTC 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 55, 244, 297
PspPI GGNCC 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 252
PsuI RGATCY 2 cut(s) 132, 295
RsaI GTAC 3 cut(s) 55, 244, 381
RsaNI GTAC 3 cut(s) 54, 243, 380
SacI GAGCTC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 652
SatI GCNGC 5 cut(s) 5, 124, 515, 518, 635
Sau3AI GATC 2 cut(s) 132, 295
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 118, 435
SetI ASST 4 cut(s) 26, 147, 405, 435
SfaNI GCATC 2 cut(s) 67, 164
SfcI CTRYAG 1 cut(s) 577
Sfr274I CTCGAG 2 cut(s) 252, 280
SinI GGWCC 1 cut(s) 109
SlaI CTCGAG 2 cut(s) 252, 280
SmlI CTYRAG 2 cut(s) 252, 280
SmoI CTYRAG 2 cut(s) 252, 280
Sse9I AATT 7 cut(s) 46, 313, 323, 362, 462, 584, 590
SsiI CCGC 8 cut(s) 7, 512, 515, 518, 530, 611, 632, 635
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 238
TaqI TCGA 2 cut(s) 253, 281
TaqII GACCGA 1 cut(s) 126
TasI AATT 7 cut(s) 46, 313, 323, 362, 462, 584, 590
TatI WGTACW 1 cut(s) 379
TauI GCSGC 3 cut(s) 517, 520, 637
TfiI GAWTC 3 cut(s) 358, 481, 504
Tru1I TTAA 1 cut(s) 652
Tru9I TTAA 1 cut(s) 652
TseI GCWGC 2 cut(s) 4, 123
TspDTI ATGAA 2 cut(s) 525, 615
TspGWI ACGGA 2 cut(s) 209, 560
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 46
XhoI CTCGAG 2 cut(s) 252, 280
ZrmI AGTACT 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.