Rmu_sc0006353.1_g000006
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006353.1
OG0021371
Physical Location & Seq
Reverse (-)
15796 .. 19189
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006353.1_g000006.1.cds

Sequence Viewer

Length: 690 bp
atggctgtggatttgtggagttggtggtggcgccggtcccaagccaaggtggctgcgggttggtgcagtggtggcattgcaaatgtgcctgtagctgaaatgggcgcattaccatgggcaagaggtttgacgtacatacacgaacacagccctagaaagtatgttcacggcaacattaaatcgacaaaaatccttctcaatgaggacctccagccttacgtatctggtttcggattggcacgtcttatcttggggtcctcaaagtttacatcttcagcttccaggaaaaagagctccagccaaaccaacgcaacctcttgttttactgtttcaactcactcaaccatttccttggcacctgaggctcgaatttctggcagcaagtttactcagaaatgtgatgtgtactcttttgggatagtgctcatggagattttaaccggtaagctaccagatgcggggcccgaaaatggtgggaagggactggagagtctggtgaggaagacatttcgagaagaacgccccttatctgtgattatagactctgcacttctgcaagaggtttatgcaaagaagcaagttgttgaagcctttcacattgctcgtaattgcactgaactcgacccagaactgcatcctaggatgaaaacagtttcggacagtcttgatcgcatcaaattgcagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.31

Weight (kDa)

9.39

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021371)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480681
rosa_laevigata RLG00000023463
rosa_multiflora Rmu_sc0006353.1_g000006
rosa_roxburghii Rroxscaffold_6G00401180
rosa_samantha Rh3DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 489
AccB1I GGYRCC 2 cut(s) 30, 355
AciI CCGC 2 cut(s) 56, 458
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 2 cut(s) 134, 407
AfiI CCNNNNNNNGG 3 cut(s) 46, 458, 470
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 2 cut(s) 333, 587
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 95, 278, 294, 448, 685
AluI AGCT 5 cut(s) 95, 278, 294, 448, 685
Alw21I GWGCWC 2 cut(s) 296, 426
AoxI GGCC 1 cut(s) 461
ApaI GGGCCC 1 cut(s) 465
ApeKI GCWGC 3 cut(s) 53, 378, 682
ApoI RAATTY 1 cut(s) 369
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 591
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 2 cut(s) 33, 107
AspS9I GGNCC 5 cut(s) 36, 205, 255, 461, 462
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 3 cut(s) 36, 205, 255
AvrII CCTAGG 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 2 cut(s) 30, 355
BanII GRGCYC 2 cut(s) 296, 465
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 2 cut(s) 296, 426
BbvI GCAGC 2 cut(s) 40, 390
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 1 cut(s) 283
BfaI CTAG 2 cut(s) 153, 639
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 34
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 3 cut(s) 54, 379, 683
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 3 cut(s) 55, 380, 684
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 3 cut(s) 36, 205, 255
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 5 cut(s) 36, 205, 255, 461, 462
BmiI GGNNCC 6 cut(s) 32, 38, 256, 357, 462, 463
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 3 cut(s) 445, 643, 681
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 3 cut(s) 194, 280, 506
BsaAI YACGTR 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 4 cut(s) 45, 113, 351, 638
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 458, 470
Bse118I RCCGGY 2 cut(s) 33, 440
Bse1I ACTGG 1 cut(s) 489
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 2 cut(s) 75, 597
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 4 cut(s) 45, 113, 351, 638
BseGI GGATG 2 cut(s) 634, 648
BseLI CCNNNNNNNGG 3 cut(s) 46, 458, 470
BseMI GCAATG 2 cut(s) 75, 597
BseMII CTCAG 2 cut(s) 351, 404
BseNI ACTGG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 2 cut(s) 40, 390
BsgI GTGCAG 2 cut(s) 85, 531
BshFI GGCC 1 cut(s) 463
BshNI GGYRCC 2 cut(s) 30, 355
BshTI ACCGGT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 296, 426
BsiSI CCGG 2 cut(s) 34, 441
BslFI GGGAC 2 cut(s) 22, 495
BslI CCNNNNNNNGG 3 cut(s) 46, 458, 470
BsmFI GGGAC 2 cut(s) 22, 495
BsnI GGCC 1 cut(s) 463
Bsp120I GGGCCC 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 296, 426, 465
Bsp143I GATC 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 2 cut(s) 56, 458
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 352, 403
BspLI GGNNCC 6 cut(s) 32, 38, 256, 357, 462, 463
BspT107I GGYRCC 2 cut(s) 30, 355
BsrDI GCAATG 2 cut(s) 75, 597
BsrFI RCCGGY 2 cut(s) 33, 440
BsrI ACTGG 1 cut(s) 489
BssAI RCCGGY 2 cut(s) 33, 440
BssECI CCNNGG 4 cut(s) 45, 113, 351, 638
BssMI GATC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 4 cut(s) 45, 113, 351, 638
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 328, 652, 662
BstACI GRCGYC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 360, 390
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 634, 648
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 2 cut(s) 33, 107
BstKTI GATC 1 cut(s) 670
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 3 cut(s) 50, 72, 362
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 465
BstSNI TACGTA 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 40, 390
BstV2I GAAGAC 1 cut(s) 509
BstXI CCANNNNNNTGG 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 463
BtgI CCRYGG 1 cut(s) 113
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 634, 648
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 612
CfoI GCGC 2 cut(s) 33, 107
Cfr10I RCCGGY 2 cut(s) 33, 440
Cfr13I GGNCC 5 cut(s) 36, 205, 255, 461, 462
Csp6I GTAC 2 cut(s) 133, 406
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 2 cut(s) 114, 427
CviQI GTAC 2 cut(s) 133, 406
DdeI CTNAG 2 cut(s) 360, 390
DinI GGCGCC 1 cut(s) 32
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 489
DseDI GACNNNNNNGTC 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 294
Eco105I TACGTA 1 cut(s) 220
Eco130I CCWWGG 4 cut(s) 45, 113, 351, 638
Eco24I GRGCYC 2 cut(s) 296, 465
Eco47I GGWCC 3 cut(s) 36, 205, 255
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 294
EcoO109I RGGNCCY 3 cut(s) 205, 255, 461
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 4 cut(s) 45, 113, 351, 638
EcoT38I GRGCYC 2 cut(s) 296, 465
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
ErhI CCWWGG 4 cut(s) 45, 113, 351, 638
FaeI CATG 2 cut(s) 117, 430
FaiI YATR 6 cut(s) 115, 137, 162, 428, 539, 567
FaqI GGGAC 2 cut(s) 22, 495
FatI CATG 2 cut(s) 113, 426
FauI CCCGC 2 cut(s) 49, 451
Fnu4HI GCNGC 3 cut(s) 54, 379, 683
FokI GGATG 2 cut(s) 621, 655
FriOI GRGCYC 2 cut(s) 296, 465
Fsp4HI GCNGC 3 cut(s) 54, 379, 683
FspBI CTAG 2 cut(s) 153, 639
GlaI GCGC 2 cut(s) 32, 106
GluI GCNGC 3 cut(s) 54, 379, 683
GsuI CTGGAG 3 cut(s) 194, 280, 506
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 1 cut(s) 463
HapII CCGG 2 cut(s) 34, 441
HhaI GCGC 2 cut(s) 33, 107
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 2 cut(s) 117, 430
Hin6I GCGC 2 cut(s) 31, 105
HinP1I GCGC 2 cut(s) 31, 105
HinfI GANTC 2 cut(s) 490, 542
HpaII CCGG 2 cut(s) 34, 441
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 4 cut(s) 166, 267, 387, 406
Hpy188I TCNGA 3 cut(s) 233, 393, 658
Hpy188III TCNNGA 2 cut(s) 512, 665
Hpy8I GTNNAC 4 cut(s) 166, 267, 387, 406
HpyAV CCTTC 2 cut(s) 203, 472
HpyCH4III ACNGT 3 cut(s) 328, 652, 662
HpyCH4IV ACGT 3 cut(s) 131, 219, 241
HpyCH4V TGCA 8 cut(s) 66, 80, 548, 556, 569, 612, 634, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 72, 362
HpyF3I CTNAG 2 cut(s) 360, 390
HpySE526I ACGT 3 cut(s) 131, 219, 241
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 2 cut(s) 117, 430
HspAI GCGC 2 cut(s) 31, 105
KasI GGCGCC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 2 cut(s) 40, 390
LweI GCATC 3 cut(s) 445, 643, 681
MaeI CTAG 2 cut(s) 153, 639
MaeII ACGT 3 cut(s) 131, 219, 241
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 3 cut(s) 264, 514, 527
MhlI GDGCHC 3 cut(s) 296, 426, 465
MluCI AATT 3 cut(s) 369, 607, 677
Mly113I GGCGCC 1 cut(s) 31
MlyI GAGTC 2 cut(s) 499, 536
MnlI CCTC 8 cut(s) 116, 196, 218, 268, 325, 355, 492, 553
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 177, 437
MslI CAYNNNNRTG 1 cut(s) 112
MspI CCGG 2 cut(s) 34, 441
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 3 cut(s) 50, 72, 362
NarI GGCGCC 1 cut(s) 31
NcoI CCATGG 1 cut(s) 113
NdeII GATC 1 cut(s) 667
NlaIII CATG 2 cut(s) 117, 430
NlaIV GGNNCC 6 cut(s) 32, 38, 256, 357, 462, 463
PdmI GAANNNNTTC 1 cut(s) 591
PfoI TCCNGGA 1 cut(s) 281
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 3 cut(s) 55, 380, 684
PleI GAGTC 2 cut(s) 498, 536
PluTI GGCGCC 1 cut(s) 34
PpsI GAGTC 2 cut(s) 498, 536
Ppu21I YACGTR 1 cut(s) 220
PpuMI RGGWCCY 2 cut(s) 205, 255
Psp124BI GAGCTC 1 cut(s) 296
Psp5II RGGWCCY 2 cut(s) 205, 255
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 6 cut(s) 32, 38, 256, 357, 462, 463
PspOMI GGGCCC 1 cut(s) 461
PspPI GGNCC 5 cut(s) 36, 205, 255, 461, 462
PspPPI RGGWCCY 2 cut(s) 205, 255
RsaI GTAC 2 cut(s) 134, 407
RsaNI GTAC 2 cut(s) 133, 406
RseI CAYNNNNRTG 1 cut(s) 112
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 177, 437
SatI GCNGC 3 cut(s) 54, 379, 683
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 5 cut(s) 36, 205, 255, 461, 462
SchI GAGTC 2 cut(s) 499, 536
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 3 cut(s) 296, 426, 465
SfaNI GCATC 3 cut(s) 445, 643, 681
SfcI CTRYAG 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 32
SinI GGWCC 3 cut(s) 36, 205, 255
SmiMI CAYNNNNRTG 1 cut(s) 112
SnaBI TACGTA 1 cut(s) 220
Sse9I AATT 3 cut(s) 369, 607, 677
SsiI CCGC 2 cut(s) 56, 458
SspDI GGCGCC 1 cut(s) 30
SspMI CTAG 2 cut(s) 153, 639
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 4 cut(s) 45, 113, 351, 638
TaaI ACNGT 3 cut(s) 328, 652, 662
TaiI ACGT 3 cut(s) 134, 222, 244
TaqI TCGA 4 cut(s) 182, 367, 511, 621
TasI AATT 3 cut(s) 369, 607, 677
TatI WGTACW 1 cut(s) 405
Tru1I TTAA 2 cut(s) 177, 437
Tru9I TTAA 2 cut(s) 177, 437
TscAI CASTG 2 cut(s) 73, 619
TseI GCWGC 3 cut(s) 53, 378, 682
TspDTI ATGAA 1 cut(s) 659
TspRI CASTG 2 cut(s) 73, 619
VpaK11BI GGWCC 3 cut(s) 36, 205, 255
XapI RAATTY 1 cut(s) 369
XmaJI CCTAGG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 153, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.