Rroxscaffold_6G00401180
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0021371
Physical Location & Seq
Forward (+)
23510627 .. 23513674
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401180.1

Sequence Viewer

Length: 426 bp
ATGTTCACGGCAACATTAAATCGACAAAAATCCTTCTCAATGAGGATCTCCAGCCTTACGTATCTGGTTTCGGATTGGCATGTCTTATCTTGGGGTCCTCAAAGTTTACTTCTTCAGCTTCCAGGAAACAGAGCTCAAGCCAAACCAACGCAACCTCTTGTTTTACTGTTTCAAGTTTCAACTCACTCAACCATTTACTTGGCACCTGGGGCTCAAATTTCTGGCAGTAAGTTTACTCAGAAATGTGACGTGTACTCATTTGGGATTGTGCTCATGGAGATTTTAACTGGTAAGCTACCAGATGAGGGGCCCGAAAATGGTGGGAAAGGACTAGAGAGTCTGGTGAGGAAGCCGTTTAGAGAAGAACGACCCTTGTCCGAGATTATAGACCCTGCACTTCTGCAAGAGGTTTATGCGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

9.1

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021371)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480681
rosa_laevigata RLG00000023463
rosa_multiflora Rmu_sc0006353.1_g000006
rosa_roxburghii Rroxscaffold_6G00401180
rosa_samantha Rh3DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 202
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 305, 317
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 173, 180
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 121, 205
AluBI AGCT 3 cut(s) 118, 134, 295
AluI AGCT 3 cut(s) 118, 134, 295
Alw21I GWGCWC 2 cut(s) 136, 273
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 308
ApaI GGGCCC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 95, 308, 309
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 3 cut(s) 136, 214, 312
Bbv12I GWGCWC 2 cut(s) 136, 273
BceAI ACGGC 2 cut(s) 24, 337
BciT130I CCWGG 2 cut(s) 123, 207
BfaI CTAG 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 123, 207
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 95, 308, 309
BmiI GGNNCC 4 cut(s) 96, 204, 309, 310
BmrFI CCNGG 2 cut(s) 123, 207
BoxI GACNNNNGTC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 317
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 123, 207
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 305, 317
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 310
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 136, 273
BslI CCNNNNNNNGG 2 cut(s) 305, 317
BsnI GGCC 1 cut(s) 310
Bsp120I GGGCCC 1 cut(s) 308
Bsp1286I GDGCHC 4 cut(s) 136, 214, 273, 312
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 96, 204, 309, 310
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 123, 207
Bst4CI ACNGT 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 123, 207
BstNSI RCATGY 1 cut(s) 83
BstPAI GACNNNNGTC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 121, 205
BstSLI GKGCMC 1 cut(s) 312
BstSNI TACGTA 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 310
BtrI CACGTC 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 95, 308, 309
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 80, 274
CviJI RGCY 8 cut(s) 54, 118, 134, 140, 212, 295, 310, 352
CviKI_1 RGCY 8 cut(s) 54, 118, 134, 140, 212, 295, 310, 352
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 336
DseDI GACNNNNNNGTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 60
Eco24I GRGCYC 3 cut(s) 136, 214, 312
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 95, 308
EcoRII CCWGG 2 cut(s) 121, 205
EcoT38I GRGCYC 3 cut(s) 136, 214, 312
FaeI CATG 2 cut(s) 83, 277
FaiI YATR 4 cut(s) 81, 275, 386, 414
FatI CATG 2 cut(s) 79, 273
FriOI GRGCYC 3 cut(s) 136, 214, 312
FspBI CTAG 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 2 cut(s) 83, 277
HinfI GANTC 1 cut(s) 337
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 4 cut(s) 6, 107, 234, 253
Hpy188I TCNGA 3 cut(s) 73, 240, 379
Hpy8I GTNNAC 4 cut(s) 6, 107, 234, 253
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 2 cut(s) 59, 249
HpyCH4V TGCA 2 cut(s) 395, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 59, 249
Hsp92II CATG 2 cut(s) 83, 277
Kzo9I GATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 59, 249
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 104, 374
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 4 cut(s) 136, 214, 273, 312
MluCI AATT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 6 cut(s) 36, 108, 165, 298, 339, 400
MseI TTAA 2 cut(s) 17, 284
MspR9I CCNGG 2 cut(s) 123, 207
MvaI CCWGG 2 cut(s) 123, 207
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 83, 277
NlaIV GGNNCC 4 cut(s) 96, 204, 309, 310
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 121
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 121, 205
PspGI CCWGG 2 cut(s) 121, 205
PspN4I GGNNCC 4 cut(s) 96, 204, 309, 310
PspOMI GGGCCC 1 cut(s) 308
PspPI GGNCC 3 cut(s) 95, 308, 309
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 17, 284
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 3 cut(s) 95, 308, 309
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 123, 207
SduI GDGCHC 4 cut(s) 136, 214, 273, 312
SetI ASST 8 cut(s) 62, 120, 136, 157, 208, 252, 297, 411
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SnaBI TACGTA 1 cut(s) 60
Sse9I AATT 1 cut(s) 216
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 121, 205
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 2 cut(s) 62, 252
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 216
TatI WGTACW 1 cut(s) 252
Tru1I TTAA 2 cut(s) 17, 284
Tru9I TTAA 2 cut(s) 17, 284
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.