Rh3DG262100
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0021371
Physical Location & Seq
Reverse (-)
26052540 .. 26057654
5115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG262100.1

Sequence Viewer

Length: 597 bp
ATGTTAAAAATTGCTCAGGGGAGCGCAAGAGGTTTGACGTACATACACGAACACAGCCCTAGAAAGTATGTTCCCGGCAACATTAAATCGACAAAAATCCTTCTCAATGAGGACCTCCAGCCTTACGTATCTGGTTTTGGACTGGCACGTCTTATCTTGGGGTCCTCAAGGTTTACTTCTTCAGCTTTCAGGAAAAAGAGCACCAGCCAAACCAACGCAACCTCTTGTTTTACTGTTTCAACTCACTCAACCATTTACTTGGCACCTGAGGCTCGAATTTCTGGCAGCAAGTTTACTCAGAAATGTGATGTGTACTCTTTTGGGATAGTGCTCATGGAGATTTTAACCGGTAAGCTACCAGATGCGGGGCCCGAAAATGGTGGGAAGGGACTAGAGAGTCTGGTGAGGAAGACATTTCGAGAAGAACGCCCCTTATCTGAGATTATAGACCCTGCACTTCTGCAAGAGGTTTATGCAAAGAAGCAAGTTGTTGAAGCCTTTCACATTGCTCGTAATTGCACTGAACTCGACCCAGAACTGCATCCTAGGATGAAAACAGTTTCGGACAGTCTTGATCGCATCAAATTGCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

9.36

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 188 5.1e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 4 - 126 6e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021371)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480681
rosa_laevigata RLG00000023463
rosa_multiflora Rmu_sc0006353.1_g000006
rosa_roxburghii Rroxscaffold_6G00401180
rosa_samantha Rh3DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 147, 396
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 1 cut(s) 365
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 2 cut(s) 41, 314
AfiI CCNNNNNNNGG 2 cut(s) 365, 377
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 2 cut(s) 240, 494
AjiI CACGTC 1 cut(s) 149
AluBI AGCT 3 cut(s) 185, 355, 592
AluI AGCT 3 cut(s) 185, 355, 592
Alw21I GWGCWC 2 cut(s) 203, 333
AoxI GGCC 1 cut(s) 368
ApaI GGGCCC 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 285, 589
ApoI RAATTY 1 cut(s) 276
AsiGI ACCGGT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 498
AspA2I CCTAGG 1 cut(s) 545
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 4 cut(s) 112, 162, 368, 369
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 2 cut(s) 112, 162
AvrII CCTAGG 1 cut(s) 545
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 203, 333
BbvI GCAGC 1 cut(s) 297
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BcnI CCSGG 1 cut(s) 75
BfaI CTAG 3 cut(s) 60, 392, 546
BisI GCNGC 2 cut(s) 286, 590
BlnI CCTAGG 1 cut(s) 545
BlsI GCNGC 2 cut(s) 287, 591
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 2 cut(s) 112, 162
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 4 cut(s) 112, 162, 368, 369
BmiI GGNNCC 4 cut(s) 163, 264, 369, 370
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 3 cut(s) 352, 550, 588
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 377
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 541, 555
BseLI CCNNNNNNNGG 2 cut(s) 365, 377
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 4 cut(s) 29, 258, 311, 429
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 262
BshTI ACCGGT 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 203, 333
BsiSI CCGG 2 cut(s) 75, 348
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 365, 377
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 1 cut(s) 370
Bsp120I GGGCCC 1 cut(s) 368
Bsp1286I GDGCHC 3 cut(s) 203, 333, 372
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 4 cut(s) 28, 259, 310, 430
BspLI GGNNCC 4 cut(s) 163, 264, 369, 370
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 545
Bst4CI ACNGT 3 cut(s) 235, 559, 569
BstBAI YACGTR 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 15, 267, 297, 438
BstF5I GGATG 2 cut(s) 541, 555
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 577
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 372
BstSNI TACGTA 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 370
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 541, 555
BtsIMutI CAGTG 1 cut(s) 519
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 112, 162, 368, 369
Csp6I GTAC 2 cut(s) 40, 313
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 1 cut(s) 334
CviJI RGCY 9 cut(s) 57, 121, 185, 207, 272, 355, 370, 497, 592
CviKI_1 RGCY 9 cut(s) 57, 121, 185, 207, 272, 355, 370, 497, 592
CviQI GTAC 2 cut(s) 40, 313
DdeI CTNAG 4 cut(s) 15, 267, 297, 438
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
DrdI GACNNNNNNGTC 2 cut(s) 147, 396
DseDI GACNNNNNNGTC 2 cut(s) 147, 396
Eco105I TACGTA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 112, 162
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 267
EcoO109I RGGNCCY 3 cut(s) 112, 162, 368
EcoT14I CCWWGG 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 1 cut(s) 337
FaiI YATR 5 cut(s) 44, 69, 335, 446, 474
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 286, 590
FokI GGATG 2 cut(s) 528, 562
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 286, 590
FspBI CTAG 3 cut(s) 60, 392, 546
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 286, 590
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 370
HapII CCGG 2 cut(s) 75, 348
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 397
HpaII CCGG 2 cut(s) 75, 348
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 174, 294, 313
Hpy188I TCNGA 3 cut(s) 300, 439, 565
Hpy188III TCNNGA 3 cut(s) 190, 419, 572
Hpy8I GTNNAC 3 cut(s) 174, 294, 313
HpyAV CCTTC 2 cut(s) 110, 379
HpyCH4III ACNGT 3 cut(s) 235, 559, 569
HpyCH4IV ACGT 3 cut(s) 38, 126, 148
HpyCH4V TGCA 6 cut(s) 455, 463, 476, 519, 541, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 15, 267, 297, 438
HpySE526I ACGT 3 cut(s) 38, 126, 148
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 3 cut(s) 352, 550, 588
MaeI CTAG 3 cut(s) 60, 392, 546
MaeII ACGT 3 cut(s) 38, 126, 148
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 3 cut(s) 171, 421, 434
MhlI GDGCHC 3 cut(s) 203, 333, 372
MluCI AATT 4 cut(s) 9, 276, 514, 584
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 8 cut(s) 23, 103, 125, 175, 232, 262, 399, 460
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 5, 84, 344
MspI CCGG 2 cut(s) 75, 348
MspR9I CCNGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 574
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 4 cut(s) 163, 264, 369, 370
PdmI GAANNNNTTC 1 cut(s) 498
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 2 cut(s) 287, 591
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 2 cut(s) 112, 162
Psp5II RGGWCCY 2 cut(s) 112, 162
PspN4I GGNNCC 4 cut(s) 163, 264, 369, 370
PspOMI GGGCCC 1 cut(s) 368
PspPI GGNCC 4 cut(s) 112, 162, 368, 369
PspPPI RGGWCCY 2 cut(s) 112, 162
RsaI GTAC 2 cut(s) 41, 314
RsaNI GTAC 2 cut(s) 40, 313
SaqAI TTAA 3 cut(s) 5, 84, 344
SatI GCNGC 2 cut(s) 286, 590
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 4 cut(s) 112, 162, 368, 369
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 3 cut(s) 203, 333, 372
SfaNI GCATC 3 cut(s) 352, 550, 588
SinI GGWCC 2 cut(s) 112, 162
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 4 cut(s) 9, 276, 514, 584
SsiI CCGC 1 cut(s) 365
SspMI CTAG 3 cut(s) 60, 392, 546
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 3 cut(s) 235, 559, 569
TaiI ACGT 3 cut(s) 41, 129, 151
TaqI TCGA 4 cut(s) 89, 274, 418, 528
TasI AATT 4 cut(s) 9, 276, 514, 584
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 3 cut(s) 5, 84, 344
Tru9I TTAA 3 cut(s) 5, 84, 344
TscAI CASTG 1 cut(s) 526
TseI GCWGC 2 cut(s) 285, 589
TspDTI ATGAA 1 cut(s) 566
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 112, 162
XapI RAATTY 1 cut(s) 276
XmaJI CCTAGG 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 60, 392, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.