Rmu_sc0006673.1_g000004

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006673.1
OG0013818
Physical Location & Seq
Reverse (-)
15626 .. 17398
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006673.1_g000004.1.cds

Sequence Viewer

Length: 1773 bp
atgaagaattctcaatggattgcaggcggacataagtaccataatcaactctggtttgtcctaacagcttccttccttatattcttggtattggtttgtacagactattcctctctaaactctggaagaaatttcaatcaggtcacctatttcgttaccaactttgcaaatgtaattgctacccaaaaccaagatcaataccaccccaactctcttcctcctcaagctacagattctcaaacagccgatcaaaccaagaggatcagtaaatattctagtattactaatacatctagtagcactcctgctccattttcttttggccatgaaagacaaccaaataatgttaccagctccaatgaaactcaaattgcaactgtcaataatattccaccaccacaggctatacctaataccaagcaccaaatctctgattctgattcgtgttcgggtcgatacatttatgtttatgatcttccaaaaaggttcaaccaggacatgctcaagaattgccattcccttcagagatggactgacatgtgcccctacatgtcaaacatgggtctagggcctaaactaactgtaaaatcttctaagagacgtgaccgattattgggggccaagggttggtttgctacaaatcagttctcattggaagttatttttcataataggatgaagaagtacaagtgcttaaccagtgattcatcattggcctcggcaatatttgtgcccttttatgctggccttgatgttggtcggtacctctggggctacaacacatctatccgagatgcttctcctctagaattggtgaaatggctttcaaatagacctgaatggaagacaatgtggggtaaagaccatttcttagttggaggcagaattgcatgggatttcaggagacaatcagataatgattctgattggggatccaagctcatgtttttgccagaatccaagaacatgacattgttgtcaattgaatcaagctcttggagcaacgagcaggcgataccataccctacatacttccatccctcaaaggagagtcaggtgtctcagtggcagagaagaatgagaaagcggaagaggccatatctcttcacttttgctggtgctccaagacctgattacgaagaaaatatccgggatatgattataagccaatgccaatcttcaaccaaacattgcagacttgtagggtgttatcatggtgcaaacaagtgtgatgaccctttagatgtgatgaaggtgtttcaatcgtctgtgttctgcctgcagccttccggggactcattcactcgtcgatcaatatttgactccatcttagcaggctgcattccggttttcttccatccgggttcagcttatgtgcagtacacatggcactttcccagtagcccgtctaagtattcagtgtttatatcagaaaatgatatcaaggagaagaaggtgatgatcaatgagacattgctgagagttcccaaagatgaagtactagcaatgagggaagaagttataaggttgattccgaaaataatatatgcagatccaagggcatctggattggacacatttgaagatgcatttgacatagcagttaagggactacttgacaaagtagagaaaactaggagggagatggaagagggtaaagatcccggtaatgctttctcactactaaacggtaccaaatttgaaatgcctgggactaagagaaatgcaaggacagtgagaatgaaggagcttcaaagacagagagaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

590

Amino Acids

67.76

Weight (kDa)

9.24

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32750 AT2G32750
fragaria_vesca FvH4_5g28240
malus_domestica MD08G1246000.v1.1 MD15G1438500.v1.1
prunus_persica Prupe.1G581600_v2.0.a1
pyrus_communis pycom08g21350
rosa_chinensis RchiOBHm_Chr7g0220401
rosa_laevigata RLG00000002222
rosa_multiflora Rmu_sc0006673.1_g000004
rosa_roxburghii Rroxscaffold_3G00239410
rosa_rugosa Rorug07G0193700
rosa_samantha Rh7AG334800 Rh7BG325700 Rh7CG352500 Rh7DG331700
rosa_wichuraiana Rw7G028540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1163, 1523
AasI GACNNNNNNGTC 1 cut(s) 976
Acc65I GGTACC 2 cut(s) 762, 1691
AccB1I GGYRCC 2 cut(s) 762, 1691
AccB7I CCANNNNNTGG 1 cut(s) 627
AciI CCGC 2 cut(s) 27, 1087
AclWI GGATC 5 cut(s) 269, 927, 940, 1547, 1655
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 4 cut(s) 7, 130, 1697, 1767
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 7 cut(s) 38, 100, 686, 764, 1382, 1500, 1693
AfiI CCNNNNNNNGG 2 cut(s) 613, 627
AflIII ACRYGT 2 cut(s) 537, 549
AgsI TTSAA 9 cut(s) 136, 490, 828, 986, 1182, 1262, 1583, 1703, 1754
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 2 cut(s) 492, 1708
AluBI AGCT 7 cut(s) 68, 227, 354, 940, 993, 1370, 1750
AluI AGCT 7 cut(s) 68, 227, 354, 940, 993, 1370, 1750
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 4 cut(s) 592, 898, 1065, 1463
AlwI GGATC 5 cut(s) 269, 927, 940, 1547, 1655
AoxI GGCC 6 cut(s) 322, 569, 618, 714, 745, 1094
ApeKI GCWGC 2 cut(s) 1282, 1338
ApoI RAATTY 4 cut(s) 7, 130, 1697, 1767
Asp718I GGTACC 2 cut(s) 762, 1691
AspS9I GGNCC 2 cut(s) 569, 618
AsuC2I CCSGG 4 cut(s) 1151, 1291, 1362, 1665
AsuHPI GGTGA 3 cut(s) 136, 826, 1468
BaeGI GKGCMC 2 cut(s) 545, 735
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BalI TGGCCA 1 cut(s) 324
BamHI GGATCC 1 cut(s) 932
BanI GGYRCC 2 cut(s) 762, 1691
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 1123
BbvI GCAGC 2 cut(s) 1294, 1325
BccI CCATC 5 cut(s) 522, 1044, 1334, 1365, 1639
BciT130I CCWGG 2 cut(s) 494, 1710
BclI TGATCA 1 cut(s) 1461
BcnI CCSGG 4 cut(s) 1151, 1291, 1362, 1665
BcoDI GTCTC 4 cut(s) 592, 898, 1065, 1463
BfaI CTAG 6 cut(s) 276, 294, 566, 806, 1502, 1635
BfmI CTRYAG 2 cut(s) 228, 1280
BisI GCNGC 2 cut(s) 1283, 1339
BlsI GCNGC 2 cut(s) 1284, 1340
BmcAI AGTACT 1 cut(s) 1500
Bme1390I CCNGG 6 cut(s) 494, 1151, 1291, 1362, 1665, 1710
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 569, 618
BmiI GGNNCC 4 cut(s) 619, 764, 934, 1693
BmrFI CCNGG 6 cut(s) 494, 1151, 1291, 1362, 1665, 1710
BmrI ACTGGG 1 cut(s) 1392
BmsI GCATC 3 cut(s) 784, 1571, 1576
BmuI ACTGGG 1 cut(s) 1392
BpiI GAAGAC 1 cut(s) 851
BpuEI CTTGAG 2 cut(s) 207, 488
BpuMI CCSGG 4 cut(s) 1151, 1291, 1362, 1665
BsaJI CCNNGG 5 cut(s) 621, 717, 1290, 1556, 1709
BsaWI WCCGGW 1 cut(s) 1345
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 627
Bse1I ACTGG 2 cut(s) 699, 1398
Bse3DI GCAATG 3 cut(s) 1189, 1472, 1512
BseBI CCWGG 2 cut(s) 494, 1710
BseDI CCNNGG 5 cut(s) 621, 717, 1290, 1556, 1709
BseGI GGATG 3 cut(s) 681, 1036, 1357
BseLI CCNNNNNNNGG 2 cut(s) 613, 627
BseMI GCAATG 3 cut(s) 1189, 1472, 1512
BseMII CTCAG 2 cut(s) 1076, 1469
BseNI ACTGG 2 cut(s) 699, 1398
BseRI GAGGAG 2 cut(s) 210, 792
BseSI GKGCMC 2 cut(s) 545, 735
BseXI GCAGC 2 cut(s) 1294, 1325
BsgI GTGCAG 1 cut(s) 1397
BshFI GGCC 6 cut(s) 324, 571, 620, 716, 747, 1096
BshNI GGYRCC 2 cut(s) 762, 1691
BsiHKAI GWGCWC 1 cut(s) 1123
BsiSI CCGG 5 cut(s) 1150, 1290, 1346, 1361, 1665
BslFI GGGAC 3 cut(s) 1307, 1623, 1726
BslI CCNNNNNNNGG 2 cut(s) 613, 627
BsmAI GTCTC 4 cut(s) 592, 898, 1065, 1463
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 3 cut(s) 1307, 1623, 1726
BsmI GAATGC 1 cut(s) 1341
BsnI GGCC 6 cut(s) 324, 571, 620, 716, 747, 1096
Bsp1286I GDGCHC 3 cut(s) 545, 735, 1123
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
BspACI CCGC 2 cut(s) 27, 1087
BspANI GGCC 6 cut(s) 324, 571, 620, 716, 747, 1096
BspCNI CTCAG 2 cut(s) 1075, 1470
BspLI GGNNCC 4 cut(s) 619, 764, 934, 1693
BspMAI CTGCAG 1 cut(s) 1284
BspPI GGATC 5 cut(s) 269, 927, 940, 1547, 1655
BspT107I GGYRCC 2 cut(s) 762, 1691
BsrDI GCAATG 3 cut(s) 1189, 1472, 1512
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 2 cut(s) 699, 1398
BssECI CCNNGG 5 cut(s) 621, 717, 1290, 1556, 1709
BssMI GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
BssT1I CCWWGG 2 cut(s) 621, 1556
Bst2UI CCWGG 2 cut(s) 494, 1710
Bst4CI ACNGT 4 cut(s) 379, 583, 1691, 1735
Bst6I CTCTTC 4 cut(s) 219, 1085, 1109, 1644
BstAUI TGTACA 1 cut(s) 98
BstC8I GCNNGC 5 cut(s) 25, 745, 1011, 1280, 1336
BstDEI CTNAG 7 cut(s) 594, 871, 1062, 1330, 1410, 1478, 1716
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 681, 1036, 1357
BstKTI GATC 9 cut(s) 196, 250, 264, 475, 935, 1313, 1464, 1555, 1663
BstMAI GTCTC 4 cut(s) 592, 898, 1065, 1463
BstMBI GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
BstMWI GCNNNNNNNGC 2 cut(s) 999, 1093
BstNI CCWGG 2 cut(s) 494, 1710
BstNSI RCATGY 3 cut(s) 502, 541, 553
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 6 cut(s) 492, 1149, 1289, 1360, 1663, 1708
BstSFI CTRYAG 2 cut(s) 228, 1280
BstSLI GKGCMC 2 cut(s) 545, 735
BstV1I GCAGC 2 cut(s) 1294, 1325
BstV2I GAAGAC 1 cut(s) 851
BstX2I RGATCY 3 cut(s) 932, 1552, 1660
BstYI RGATCY 3 cut(s) 932, 1552, 1660
BsuRI GGCC 6 cut(s) 324, 571, 620, 716, 747, 1096
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 3 cut(s) 681, 1036, 1357
BtsIMutI CAGTG 4 cut(s) 706, 1070, 1425, 1740
Cac8I GCNNGC 5 cut(s) 25, 745, 1011, 1280, 1336
Cfr13I GGNCC 2 cut(s) 569, 618
Csp6I GTAC 7 cut(s) 37, 99, 685, 763, 1381, 1499, 1692
CviQI GTAC 7 cut(s) 37, 99, 685, 763, 1381, 1499, 1692
DdeI CTNAG 7 cut(s) 594, 871, 1062, 1330, 1410, 1478, 1716
DpnI GATC 9 cut(s) 195, 249, 263, 474, 934, 1312, 1463, 1554, 1662
DpnII GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
DrdI GACNNNNNNGTC 1 cut(s) 976
DseDI GACNNNNNNGTC 1 cut(s) 976
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 4 cut(s) 219, 1085, 1109, 1644
EarI CTCTTC 4 cut(s) 219, 1085, 1109, 1644
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 621, 1556
Eco32I GATATC 1 cut(s) 1441
Eco57I CTGAAG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 492, 1708
EcoRV GATATC 1 cut(s) 1441
EcoT14I CCWWGG 2 cut(s) 621, 1556
EcoT22I ATGCAT 1 cut(s) 1591
ErhI CCWWGG 2 cut(s) 621, 1556
Esp3I CGTCTC 1 cut(s) 592
FaqI GGGAC 3 cut(s) 1307, 1623, 1726
FbaI TGATCA 1 cut(s) 1461
Fnu4HI GCNGC 2 cut(s) 1283, 1339
FokI GGATG 3 cut(s) 688, 1023, 1344
Fsp4HI GCNGC 2 cut(s) 1283, 1339
FspBI CTAG 6 cut(s) 276, 294, 566, 806, 1502, 1635
GluI GCNGC 2 cut(s) 1283, 1339
HaeIII GGCC 6 cut(s) 324, 571, 620, 716, 747, 1096
HapII CCGG 5 cut(s) 1150, 1290, 1346, 1361, 1665
HpaII CCGG 5 cut(s) 1150, 1290, 1346, 1361, 1665
HphI GGTGA 3 cut(s) 136, 826, 1468
Hpy166II GTNNAC 1 cut(s) 1383
Hpy188I TCNGA 8 cut(s) 433, 439, 525, 791, 913, 925, 1432, 1536
Hpy188III TCNNGA 5 cut(s) 123, 505, 806, 901, 1566
Hpy8I GTNNAC 1 cut(s) 1383
Hpy99I CGWCG 1 cut(s) 1311
HpyAV CCTTC 6 cut(s) 82, 530, 1246, 1296, 1447, 1738
HpyCH4III ACNGT 4 cut(s) 379, 583, 1691, 1735
HpyCH4IV ACGT 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 999, 1093
HpyF3I CTNAG 7 cut(s) 594, 871, 1062, 1330, 1410, 1478, 1716
HpySE526I ACGT 1 cut(s) 601
KpnI GGTACC 2 cut(s) 766, 1695
Ksp22I TGATCA 1 cut(s) 1461
Kzo9I GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
LmnI GCTCC 5 cut(s) 313, 359, 999, 1126, 1747
Lsp1109I GCAGC 2 cut(s) 1294, 1325
LweI GCATC 3 cut(s) 784, 1571, 1576
MaeI CTAG 6 cut(s) 276, 294, 566, 806, 1502, 1635
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 4 cut(s) 142, 154, 346, 602
MalI GATC 9 cut(s) 195, 249, 263, 474, 934, 1312, 1463, 1554, 1662
MboI GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 3 cut(s) 932, 1552, 1660
MhlI GDGCHC 3 cut(s) 545, 735, 1123
MlsI TGGCCA 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 3 cut(s) 1060, 1289, 1316
MmeI TCCRAC 1 cut(s) 856
Mox20I TGGCCA 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 1591
MscI TGGCCA 1 cut(s) 324
MseI TTAA 2 cut(s) 695, 1605
Msp20I TGGCCA 1 cut(s) 324
MspI CCGG 5 cut(s) 1150, 1290, 1346, 1361, 1665
MspR9I CCNGG 6 cut(s) 494, 1151, 1291, 1362, 1665, 1710
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 1341
MvaI CCWGG 2 cut(s) 494, 1710
MwoI GCNNNNNNNGC 2 cut(s) 999, 1093
NciI CCSGG 4 cut(s) 1151, 1291, 1362, 1665
NdeII GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
NlaIV GGNNCC 4 cut(s) 619, 764, 934, 1693
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 2 cut(s) 142, 602
NsiI ATGCAT 1 cut(s) 1591
NspI RCATGY 3 cut(s) 502, 541, 553
PciI ACATGT 2 cut(s) 537, 549
PctI GAATGC 1 cut(s) 1341
PfeI GAWTC 8 cut(s) 233, 434, 440, 704, 920, 956, 986, 1531
PflMI CCANNNNNTGG 1 cut(s) 627
PfoI TCCNGGA 1 cut(s) 1149
PkrI GCNGC 2 cut(s) 1284, 1340
PleI GAGTC 3 cut(s) 1059, 1289, 1316
PpsI GAGTC 3 cut(s) 1059, 1289, 1316
PscI ACATGT 2 cut(s) 537, 549
PsiI TTATAA 2 cut(s) 1163, 1523
Psp6I CCWGG 2 cut(s) 492, 1708
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 492, 1708
PspN4I GGNNCC 4 cut(s) 619, 764, 934, 1693
PspPI GGNCC 2 cut(s) 569, 618
PstI CTGCAG 1 cut(s) 1284
PsuI RGATCY 3 cut(s) 932, 1552, 1660
RsaI GTAC 7 cut(s) 38, 100, 686, 764, 1382, 1500, 1693
RsaNI GTAC 7 cut(s) 37, 99, 685, 763, 1381, 1499, 1692
SaqAI TTAA 2 cut(s) 695, 1605
SatI GCNGC 2 cut(s) 1283, 1339
Sau3AI GATC 9 cut(s) 193, 247, 261, 472, 932, 1310, 1461, 1552, 1660
Sau96I GGNCC 2 cut(s) 569, 618
ScaI AGTACT 1 cut(s) 1500
SchI GAGTC 3 cut(s) 1060, 1289, 1316
ScrFI CCNGG 6 cut(s) 494, 1151, 1291, 1362, 1665, 1710
SduI GDGCHC 3 cut(s) 545, 735, 1123
SfaNI GCATC 3 cut(s) 784, 1571, 1576
SfcI CTRYAG 2 cut(s) 228, 1280
SmlI CTYRAG 2 cut(s) 222, 503
SmoI CTYRAG 2 cut(s) 222, 503
SsiI CCGC 2 cut(s) 27, 1087
SspI AATATT 4 cut(s) 272, 388, 726, 1317
SspMI CTAG 6 cut(s) 276, 294, 566, 806, 1502, 1635
StyD4I CCNGG 6 cut(s) 492, 1149, 1289, 1360, 1663, 1708
StyI CCWWGG 2 cut(s) 621, 1556
TaaI ACNGT 4 cut(s) 379, 583, 1691, 1735
TaiI ACGT 1 cut(s) 604
TaqI TCGA 2 cut(s) 454, 1309
TaqII GACCGA 1 cut(s) 621
TatI WGTACW 4 cut(s) 98, 684, 1380, 1498
TfiI GAWTC 8 cut(s) 233, 434, 440, 704, 920, 956, 986, 1531
Tru1I TTAA 2 cut(s) 695, 1605
Tru9I TTAA 2 cut(s) 695, 1605
TscAI CASTG 4 cut(s) 706, 1070, 1425, 1740
TseFI GTSAC 2 cut(s) 142, 602
TseI GCWGC 2 cut(s) 1282, 1338
Tsp45I GTSAC 2 cut(s) 142, 602
TspDTI ATGAA 9 cut(s) 17, 342, 375, 656, 692, 696, 1265, 1509, 1757
TspRI CASTG 4 cut(s) 706, 1070, 1425, 1740
Van91I CCANNNNNTGG 1 cut(s) 627
XapI RAATTY 4 cut(s) 7, 130, 1697, 1767
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 3 cut(s) 502, 541, 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XspI CTAG 6 cut(s) 276, 294, 566, 806, 1502, 1635
ZrmI AGTACT 1 cut(s) 1500
Zsp2I ATGCAT 1 cut(s) 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.