Rroxscaffold_3G00239410

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013818
Physical Location & Seq
Reverse (-)
29705063 .. 29706835
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239410.1

Sequence Viewer

Length: 1773 bp
ATGGAGAAATCTCAATGGATTGCAGGCGGACATAAGTACCATAGTCAACTCTGGTTTGTCCTAACAGCTTCCTTCCTTATATTCTTGGTATTGATTTGTACAGACTATTCCTCTCTAAACTCAGGAAGAAATTTCAATCGGGTCACCTATTTCATTACCAACTTTGAAAATGTAATTGCTACCCAAAACCAAGATCAACACCATCCCAACTCTCTTCCTCCTCAAGCTACAGATTCTCAAACAGCCGATCAAACCAAGAGGATCAGTAATTCTAGTATTACTAATACATCTAGTAGCACTCCTGCTCCATTTTCTTTTGGCCATGAAAGACAACCAAATAATGTTACCAGCTCCAATGAAACTCAAATTGCAACTATCAATAATATTCCACCACCACAGGCTATACCTAATACCATGGACCAAATCTCTGATTCTGATTCGTGTTCGGGTCGATACATTTATGTTTATGATCTTCCAAAAAGGTTCAACCAGGACTTGCTCAAGAATTGTCATTCCCTTCAGAGATGGACTGACATGTGCCCCTACATGTCAAACATGGGTCTAGGGCCTAAACTAACTGAAAAATCTTCTAAGAGACGTGACCGATTATTGGGGGCCAAAGGTTGGTTTGCTACAAATCAGTTCTCATTAGAAGTTATTTTTCATAATAGGATGAAGAAGTACAAGTGCTTAACCAGTGATTCATCATTGGCCTCGGCAATATTTGTGCCCTTTTACGCTGGCCTTGATGTTGGTCGGCACCTCTGGGGCTACAACACATCTATCCGAGATGCTTCTCCTCTAGAATTGGTGAAATGGCTTTCAAATAGACCTGAATGGAAGACAATGTGGGGTAAAGACCATTTCTTAGTTGGAGGCAGAATTGCGTGGGATTTCAGGAGACAAACAGATAATGATTCTGATTGGGGATCCAAGCTCATGTTTTTGCCAGAATCTAAGAACATGACATTGTTGTCAATTGAATCAAGCTCTTGGAGAAACGAGCAGGCGATACCATACCCTACATACTTCCATCCCTCAAAGGAGAGTCAGGTGTCTGAGTGGCAGAGAAGAATGAGAAAGCGGAAGAGGCCGTATCTCTTCACTTTTGCTGGTGCTCCAAGACCTGATTTCAAAGAAAATATCCGGGATATGATTATAAGCCAATGCCAATCTTCAACCAAACATTGCAGACTTGTAGAGTGTTATCATGGTGCAAGCAAGTGTGATGACCCTTTAGACGTGATGAAGGTATTTCAATCGTCTGTTTTCTGCCTGCAGCCTTCTGGGGACTCATTCACTCGTCGATCAATATTTGACTCCATCTTGGCAGGCTGCATTCCGGTTTTCTTCCATCCGGGTTCAGCTTATGTGCAGTACACATGGCACTTTCCCAGCAGCCCGTCTAAGTATTCAGTGTTCATATCAGAAAATGATATCAAGGAGAAGAAGGTGATGATCAATGAGACATTGCTGAGAGTTCCCAAAGATGAAGTACTAGCAATGAGGGAGGAAGTTTTAAGGTTGATTCCGAAAATAATATATGCAGATCCAAGGGCATCTGGATTGGAGACATTTGAAGATGCATTTGACATAGCAGTTAAGGGACTACTTGACAAAGTAGAGAAAACTAGGAGGGACATGGAAGAGGGTAAAGATCCCGGTAATGCTTTCTCACTACTAAACGTTACCAAATTTGATATGCCTGGGACTAAGAGAAATGCAAGGAAAATAAGAATGAAGGAGCTTCAAAGACAGAGAAATTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

590

Amino Acids

67.93

Weight (kDa)

9.22

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 147 - 485 1.9e-83 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32750 AT2G32750
fragaria_vesca FvH4_5g28240
malus_domestica MD08G1246000.v1.1 MD15G1438500.v1.1
prunus_persica Prupe.1G581600_v2.0.a1
pyrus_communis pycom08g21350
rosa_chinensis RchiOBHm_Chr7g0220401
rosa_laevigata RLG00000002222
rosa_multiflora Rmu_sc0006673.1_g000004
rosa_roxburghii Rroxscaffold_3G00239410
rosa_rugosa Rorug07G0193700
rosa_samantha Rh7AG334800 Rh7BG325700 Rh7CG352500 Rh7DG331700
rosa_wichuraiana Rw7G028540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1160
AasI GACNNNNNNGTC 1 cut(s) 973
AccB1I GGYRCC 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 624
AciI CCGC 2 cut(s) 27, 1084
AclI AACGTT 1 cut(s) 1686
AclWI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 3 cut(s) 130, 1694, 1762
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 5 cut(s) 38, 100, 683, 1379, 1497
AfiI CCNNNNNNNGG 2 cut(s) 610, 624
AflIII ACRYGT 2 cut(s) 534, 546
AjiI CACGTC 2 cut(s) 599, 1243
AjnI CCWGG 2 cut(s) 489, 1705
AluBI AGCT 7 cut(s) 68, 227, 351, 937, 990, 1367, 1747
AluI AGCT 7 cut(s) 68, 227, 351, 937, 990, 1367, 1747
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 4 cut(s) 589, 895, 1460, 1565
AlwI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
AoxI GGCC 6 cut(s) 319, 566, 615, 711, 742, 1091
ApeKI GCWGC 3 cut(s) 1279, 1335, 1398
ApoI RAATTY 3 cut(s) 130, 1694, 1762
AspS9I GGNCC 3 cut(s) 418, 566, 615
AsuC2I CCSGG 3 cut(s) 1148, 1359, 1662
AsuHPI GGTGA 3 cut(s) 136, 823, 1465
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 2 cut(s) 542, 732
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 929
BanI GGYRCC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 1120
BbvI GCAGC 3 cut(s) 1291, 1322, 1410
BccI CCATC 5 cut(s) 210, 519, 1041, 1331, 1362
BceAI ACGGC 1 cut(s) 1078
BciT130I CCWGG 2 cut(s) 491, 1707
BclI TGATCA 1 cut(s) 1458
BcnI CCSGG 3 cut(s) 1148, 1359, 1662
BcoDI GTCTC 4 cut(s) 589, 895, 1460, 1565
BfaI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
BfmI CTRYAG 2 cut(s) 228, 1277
BisI GCNGC 3 cut(s) 1280, 1336, 1399
BlsI GCNGC 3 cut(s) 1281, 1337, 1400
BmcAI AGTACT 1 cut(s) 1497
Bme1390I CCNGG 5 cut(s) 491, 1148, 1359, 1662, 1707
Bme18I GGWCC 1 cut(s) 418
BmgBI CACGTC 2 cut(s) 599, 1243
BmgT120I GGNCC 3 cut(s) 418, 566, 615
BmiI GGNNCC 3 cut(s) 616, 761, 931
BmrFI CCNGG 5 cut(s) 491, 1148, 1359, 1662, 1707
BmsI GCATC 3 cut(s) 781, 1568, 1573
BpiI GAAGAC 1 cut(s) 848
BpuEI CTTGAG 2 cut(s) 207, 485
BpuMI CCSGG 3 cut(s) 1148, 1359, 1662
BsaJI CCNNGG 4 cut(s) 414, 714, 1553, 1706
BsaWI WCCGGW 1 cut(s) 1342
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 624
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 3 cut(s) 1186, 1469, 1509
BseBI CCWGG 2 cut(s) 491, 1707
BseDI CCNNGG 4 cut(s) 414, 714, 1553, 1706
BseGI GGATG 4 cut(s) 202, 678, 1033, 1354
BseLI CCNNNNNNNGG 2 cut(s) 610, 624
BseMI GCAATG 3 cut(s) 1186, 1469, 1509
BseMII CTCAG 3 cut(s) 135, 1050, 1466
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 2 cut(s) 210, 789
BseSI GKGCMC 2 cut(s) 542, 732
BseXI GCAGC 3 cut(s) 1291, 1322, 1410
BseYI CCCAGC 1 cut(s) 1394
BsgI GTGCAG 1 cut(s) 1394
BshFI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BshNI GGYRCC 1 cut(s) 759
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 1147, 1343, 1358, 1662
BslFI GGGAC 4 cut(s) 1304, 1620, 1652, 1723
BslI CCNNNNNNNGG 2 cut(s) 610, 624
BsmAI GTCTC 4 cut(s) 589, 895, 1460, 1565
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 4 cut(s) 1304, 1620, 1652, 1723
BsmI GAATGC 1 cut(s) 1338
BsnI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
Bsp1286I GDGCHC 3 cut(s) 542, 732, 1120
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 2 cut(s) 27, 1084
BspANI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BspCNI CTCAG 3 cut(s) 134, 1051, 1467
BspLI GGNNCC 3 cut(s) 616, 761, 931
BspMAI CTGCAG 1 cut(s) 1281
BspPI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
BspT107I GGYRCC 1 cut(s) 759
BsrDI GCAATG 3 cut(s) 1186, 1469, 1509
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 1 cut(s) 696
BssECI CCNNGG 4 cut(s) 414, 714, 1553, 1706
BssMI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
BssT1I CCWWGG 2 cut(s) 414, 1553
Bst2UI CCWGG 2 cut(s) 491, 1707
Bst6I CTCTTC 4 cut(s) 219, 1082, 1106, 1641
BstAUI TGTACA 1 cut(s) 98
BstC8I GCNNGC 6 cut(s) 25, 742, 1008, 1219, 1277, 1333
BstDEI CTNAG 8 cut(s) 121, 591, 868, 957, 1059, 1407, 1475, 1713
BstDSI CCRYGG 1 cut(s) 414
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 4 cut(s) 202, 678, 1033, 1354
BstKTI GATC 9 cut(s) 196, 250, 264, 472, 932, 1310, 1461, 1552, 1660
BstMAI GTCTC 4 cut(s) 589, 895, 1460, 1565
BstMBI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
BstMWI GCNNNNNNNGC 1 cut(s) 1090
BstNI CCWGG 2 cut(s) 491, 1707
BstNSI RCATGY 2 cut(s) 538, 550
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 5 cut(s) 489, 1146, 1357, 1660, 1705
BstSFI CTRYAG 2 cut(s) 228, 1277
BstSLI GKGCMC 2 cut(s) 542, 732
BstV1I GCAGC 3 cut(s) 1291, 1322, 1410
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 3 cut(s) 929, 1549, 1657
BstYI RGATCY 3 cut(s) 929, 1549, 1657
BsuRI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BtgI CCRYGG 1 cut(s) 414
BtrI CACGTC 2 cut(s) 599, 1243
BtsCI GGATG 4 cut(s) 202, 678, 1033, 1354
BtsIMutI CAGTG 2 cut(s) 703, 1422
Cac8I GCNNGC 6 cut(s) 25, 742, 1008, 1219, 1277, 1333
Cfr13I GGNCC 3 cut(s) 418, 566, 615
Csp6I GTAC 5 cut(s) 37, 99, 682, 1378, 1496
CviQI GTAC 5 cut(s) 37, 99, 682, 1378, 1496
DdeI CTNAG 8 cut(s) 121, 591, 868, 957, 1059, 1407, 1475, 1713
DpnI GATC 9 cut(s) 195, 249, 263, 471, 931, 1309, 1460, 1551, 1659
DpnII GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
DrdI GACNNNNNNGTC 1 cut(s) 973
DseDI GACNNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 4 cut(s) 219, 1082, 1106, 1641
EarI CTCTTC 4 cut(s) 219, 1082, 1106, 1641
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 414, 1553
Eco32I GATATC 1 cut(s) 1438
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 566
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 489, 1705
EcoRV GATATC 1 cut(s) 1438
EcoT14I CCWWGG 2 cut(s) 414, 1553
EcoT22I ATGCAT 1 cut(s) 1588
ErhI CCWWGG 2 cut(s) 414, 1553
Esp3I CGTCTC 1 cut(s) 589
FaqI GGGAC 4 cut(s) 1304, 1620, 1652, 1723
FbaI TGATCA 1 cut(s) 1458
Fnu4HI GCNGC 3 cut(s) 1280, 1336, 1399
FokI GGATG 4 cut(s) 189, 685, 1020, 1341
Fsp4HI GCNGC 3 cut(s) 1280, 1336, 1399
FspBI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
GluI GCNGC 3 cut(s) 1280, 1336, 1399
GsaI CCCAGC 1 cut(s) 1398
HaeIII GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
HapII CCGG 4 cut(s) 1147, 1343, 1358, 1662
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HpaII CCGG 4 cut(s) 1147, 1343, 1358, 1662
HphI GGTGA 3 cut(s) 136, 823, 1465
Hpy166II GTNNAC 2 cut(s) 47, 1380
Hpy188I TCNGA 8 cut(s) 430, 436, 522, 788, 922, 1060, 1429, 1533
Hpy188III TCNNGA 5 cut(s) 123, 502, 803, 898, 1563
Hpy8I GTNNAC 2 cut(s) 47, 1380
Hpy99I CGWCG 1 cut(s) 1308
HpyAV CCTTC 6 cut(s) 82, 527, 1243, 1293, 1444, 1735
HpyCH4IV ACGT 3 cut(s) 598, 1242, 1686
HpyF10VI GCNNNNNNNGC 1 cut(s) 1090
HpyF3I CTNAG 8 cut(s) 121, 591, 868, 957, 1059, 1407, 1475, 1713
HpySE526I ACGT 3 cut(s) 598, 1242, 1686
Ksp22I TGATCA 1 cut(s) 1458
Kzo9I GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
LmnI GCTCC 4 cut(s) 310, 356, 1123, 1744
Lsp1109I GCAGC 3 cut(s) 1291, 1322, 1410
LweI GCATC 3 cut(s) 781, 1568, 1573
MaeI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
MaeII ACGT 3 cut(s) 598, 1242, 1686
MaeIII GTNAC 4 cut(s) 142, 343, 599, 1687
MalI GATC 9 cut(s) 195, 249, 263, 471, 931, 1309, 1460, 1551, 1659
MboI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 3 cut(s) 929, 1549, 1657
MhlI GDGCHC 3 cut(s) 542, 732, 1120
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 3 cut(s) 1057, 1286, 1313
MmeI TCCRAC 1 cut(s) 853
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 1588
MscI TGGCCA 1 cut(s) 321
MseI TTAA 3 cut(s) 692, 1520, 1602
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 4 cut(s) 1147, 1343, 1358, 1662
MspR9I CCNGG 5 cut(s) 491, 1148, 1359, 1662, 1707
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 1338
MvaI CCWGG 2 cut(s) 491, 1707
MwoI GCNNNNNNNGC 1 cut(s) 1090
NciI CCSGG 3 cut(s) 1148, 1359, 1662
NcoI CCATGG 1 cut(s) 414
NdeII GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
NlaIV GGNNCC 3 cut(s) 616, 761, 931
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 2 cut(s) 142, 599
NsiI ATGCAT 1 cut(s) 1588
NspI RCATGY 2 cut(s) 538, 550
PciI ACATGT 2 cut(s) 534, 546
PctI GAATGC 1 cut(s) 1338
PfeI GAWTC 8 cut(s) 233, 431, 437, 701, 917, 953, 983, 1528
PflMI CCANNNNNTGG 1 cut(s) 624
PfoI TCCNGGA 1 cut(s) 1146
PkrI GCNGC 3 cut(s) 1281, 1337, 1400
PleI GAGTC 3 cut(s) 1056, 1286, 1313
PpsI GAGTC 3 cut(s) 1056, 1286, 1313
PscI ACATGT 2 cut(s) 534, 546
PsiI TTATAA 1 cut(s) 1160
Psp1406I AACGTT 1 cut(s) 1686
Psp6I CCWGG 2 cut(s) 489, 1705
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 1394
PspGI CCWGG 2 cut(s) 489, 1705
PspN4I GGNNCC 3 cut(s) 616, 761, 931
PspPI GGNCC 3 cut(s) 418, 566, 615
PsrI GAACNNNNNNTAC 2 cut(s) 1403, 1435
PstI CTGCAG 1 cut(s) 1281
PsuI RGATCY 3 cut(s) 929, 1549, 1657
RsaI GTAC 5 cut(s) 38, 100, 683, 1379, 1497
RsaNI GTAC 5 cut(s) 37, 99, 682, 1378, 1496
SaqAI TTAA 3 cut(s) 692, 1520, 1602
SatI GCNGC 3 cut(s) 1280, 1336, 1399
Sau3AI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
Sau96I GGNCC 3 cut(s) 418, 566, 615
ScaI AGTACT 1 cut(s) 1497
SchI GAGTC 3 cut(s) 1057, 1286, 1313
ScrFI CCNGG 5 cut(s) 491, 1148, 1359, 1662, 1707
SduI GDGCHC 3 cut(s) 542, 732, 1120
SfaNI GCATC 3 cut(s) 781, 1568, 1573
SfcI CTRYAG 2 cut(s) 228, 1277
SinI GGWCC 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 222, 500
SmoI CTYRAG 2 cut(s) 222, 500
SsiI CCGC 2 cut(s) 27, 1084
SspI AATATT 3 cut(s) 385, 723, 1314
SspMI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
StyD4I CCNGG 5 cut(s) 489, 1146, 1357, 1660, 1705
StyI CCWWGG 2 cut(s) 414, 1553
TaiI ACGT 3 cut(s) 601, 1245, 1689
TaqI TCGA 2 cut(s) 451, 1306
TaqII GACCGA 1 cut(s) 618
TatI WGTACW 4 cut(s) 98, 681, 1377, 1495
TfiI GAWTC 8 cut(s) 233, 431, 437, 701, 917, 953, 983, 1528
Tru1I TTAA 3 cut(s) 692, 1520, 1602
Tru9I TTAA 3 cut(s) 692, 1520, 1602
TscAI CASTG 2 cut(s) 703, 1422
TseFI GTSAC 2 cut(s) 142, 599
TseI GCWGC 3 cut(s) 1279, 1335, 1398
Tsp45I GTSAC 2 cut(s) 142, 599
TspRI CASTG 2 cut(s) 703, 1422
Van91I CCANNNNNTGG 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 3 cut(s) 130, 1694, 1762
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 2 cut(s) 538, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XspI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
ZrmI AGTACT 1 cut(s) 1497
Zsp2I ATGCAT 1 cut(s) 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.