Rh7AG334800

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013818
Physical Location & Seq
Forward (+)
38734236 .. 38736642
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG334800.1

Sequence Viewer

Length: 1770 bp
ATGGAGAATTCTCAATGGATTGCAGGCGGACATAAGTACCATAATCAACTCTGGTTTGTCCTAACAGCTTCCTTCCTTATATTCTTGGTATTGATTTGTACAGACTATTCCTCTCTAAACTCTGGAAGAAATTTCAATCAGGTCACCTATTTCGTTACCAACTTTGCAAATGTAATTGCTACCCAAAACCAAGATCAACACCATCCCAACTCTCTTCCTCCTCAAGCTACAGATTCTCAAACAGCCGATCAAACCAAGAGGATCAGTAATTCTAGTATTACTAATACATCTAGTAGCACTCCTGCTCCATTTTCTTTTGGCCATGAAAGACAACCAAATAATGTTACCAGCTCCAATGAAACTCAAATTGCAACTGTCAATAATATTCCACCACCACAGGCTATACCTAATACCAAGCACCAAATCTCTGATTCTGATTCATGTTCGGGTCGATACATTTATGTTTATGATCTTCCAAAAAGGTTCAACCAGGACTTGCTCAAGAATTGCCATTCCCTTCAGAGATGGACTGACATGTGCCCCTACATGTCAAACATGGGTCTAGGGCCTAAACTAACTGTAAAATCTTCTAAGAGACGTGACCGATTATTGGGGGCCAAAGGTTGGTTTGCTACAAATCAGTTCTCATTAGAAGTTATTTTTCATAATAGGATGAAGCAGTACAAGTGCTTAACCAGTGATTCATCATTGGCCTCGGCAATATTTGTGCCCTTTTACGCTGGCCTTGATGTTGGTCGGTACCTCTGGGGCTACAACACATCTATCCGAGATGCTTCTCCTCTAGAATTGGTGAAATGGCTTTCAAATAGACCTGAATGGAAGACAATGTGGGGTAAAGACCATTTCTTAGTTGGAGGCAGAATTGCATGGGATTTCAGGAGACAAACAGACAATGATTCTGATTGGGGATCCAAGCTCATGTTTTTGCCAGAATCCAAGAACATGACATTGTTGTCAATTGAATCAAGCTCTTGGACCAACGAGCAGGCGATACCATACCCTACATACTTCCATCCCTCAAAGGAGAGTCAGGTGTCTCAGTGGCAGAGAAGAATGAGAAAGCGGAAGAGGCCATACCTCTTCACTTTTGCTGGTGCTCCAAGACCTGATTACAAAGAAAATATCCGGGATATGATTATAAGCCAATGCCAATCTTCAACCAAACATTGCAGACTTGTAGGGTGTTATCATGGTGCAAACAAGTGTGATGACCCTTTAGATGTGATGAAGGTGTTTCAATCGTCTGTGTTCTGCCTGCAGCCTTCCGGGGACTCATTCACTCGTCGATCAATATTTGACTCCATCTTAGCAGGCTGCATTCCTGTTTTCTTCCATCCGGGTTCAGCTTATGTGCAGTACACATGGCACTTTCCCAGTAGCCCGTCTAAGTATTCAGTGTTTATATCAGAAAATGATATCAAGGAGAAGAAGGTGATGATCAATGAGACATTGCTGAGAGTTCCCAAAGATGAAGTACTAGCAATGAGGGAAGAAGTTATAAGGTTGATTCCGAAAATAATATATGCAGATCCAAGGGCATCTGGATTGGACACATTTGAAGATGCATTTGACATAGCTGTTAAGGGACTACTTGACAAAGTAGAGAAAACTAGGAGGGAGATGGAAGAGGGTAAAGATCCCGGTAATGCTTTCTCACTACTAAACGGTACCAAATTTGAAATGCCTGGGACTAAGAGAAATGCAAGGACAGTGAGAATGAAGGAGCTTCAAAGACAGAGAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

589

Amino Acids

67.58

Weight (kDa)

9.18

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 147 - 485 1.2e-83 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32750 AT2G32750
fragaria_vesca FvH4_5g28240
malus_domestica MD08G1246000.v1.1 MD15G1438500.v1.1
prunus_persica Prupe.1G581600_v2.0.a1
pyrus_communis pycom08g21350
rosa_chinensis RchiOBHm_Chr7g0220401
rosa_laevigata RLG00000002222
rosa_multiflora Rmu_sc0006673.1_g000004
rosa_roxburghii Rroxscaffold_3G00239410
rosa_rugosa Rorug07G0193700
rosa_samantha Rh7AG334800 Rh7BG325700 Rh7CG352500 Rh7DG331700
rosa_wichuraiana Rw7G028540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1160, 1520
AasI GACNNNNNNGTC 1 cut(s) 973
Acc65I GGTACC 2 cut(s) 759, 1688
AccB1I GGYRCC 2 cut(s) 759, 1688
AccB7I CCANNNNNTGG 1 cut(s) 624
AciI CCGC 2 cut(s) 27, 1084
AclWI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 4 cut(s) 7, 130, 1694, 1764
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 7 cut(s) 38, 100, 683, 761, 1379, 1497, 1690
AfiI CCNNNNNNNGG 2 cut(s) 610, 624
AflIII ACRYGT 2 cut(s) 534, 546
AgsI TTSAA 9 cut(s) 136, 487, 825, 983, 1179, 1259, 1580, 1700, 1751
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 2 cut(s) 489, 1705
AluBI AGCT 8 cut(s) 68, 227, 351, 937, 990, 1367, 1598, 1747
AluI AGCT 8 cut(s) 68, 227, 351, 937, 990, 1367, 1598, 1747
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 4 cut(s) 589, 895, 1062, 1460
AlwI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
AoxI GGCC 6 cut(s) 319, 566, 615, 711, 742, 1091
ApeKI GCWGC 2 cut(s) 1279, 1335
ApoI RAATTY 4 cut(s) 7, 130, 1694, 1764
Asp718I GGTACC 2 cut(s) 759, 1688
AspS9I GGNCC 3 cut(s) 566, 615, 996
AsuC2I CCSGG 4 cut(s) 1148, 1288, 1359, 1662
AsuHPI GGTGA 3 cut(s) 136, 823, 1465
AvaII GGWCC 1 cut(s) 996
BaeGI GKGCMC 2 cut(s) 542, 732
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 929
BanI GGYRCC 2 cut(s) 759, 1688
BarI GAAGNNNNNNTAC 2 cut(s) 1079, 1111
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 1120
BbvI GCAGC 2 cut(s) 1291, 1322
BccI CCATC 6 cut(s) 210, 519, 1041, 1331, 1362, 1636
BciT130I CCWGG 2 cut(s) 491, 1707
BclI TGATCA 1 cut(s) 1458
BcnI CCSGG 4 cut(s) 1148, 1288, 1359, 1662
BcoDI GTCTC 4 cut(s) 589, 895, 1062, 1460
BfaI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
BfmI CTRYAG 2 cut(s) 228, 1277
BisI GCNGC 2 cut(s) 1280, 1336
BlsI GCNGC 2 cut(s) 1281, 1337
BmcAI AGTACT 1 cut(s) 1497
Bme1390I CCNGG 6 cut(s) 491, 1148, 1288, 1359, 1662, 1707
Bme18I GGWCC 1 cut(s) 996
BmgBI CACGTC 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 566, 615, 996
BmiI GGNNCC 4 cut(s) 616, 761, 931, 1690
BmrFI CCNGG 6 cut(s) 491, 1148, 1288, 1359, 1662, 1707
BmrI ACTGGG 1 cut(s) 1389
BmsI GCATC 3 cut(s) 781, 1568, 1573
BmuI ACTGGG 1 cut(s) 1389
BpiI GAAGAC 1 cut(s) 848
BpuEI CTTGAG 2 cut(s) 207, 485
BpuMI CCSGG 4 cut(s) 1148, 1288, 1359, 1662
BsaJI CCNNGG 4 cut(s) 714, 1287, 1553, 1706
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 624
Bse1I ACTGG 2 cut(s) 696, 1395
Bse3DI GCAATG 3 cut(s) 1186, 1469, 1509
BseBI CCWGG 2 cut(s) 491, 1707
BseDI CCNNGG 4 cut(s) 714, 1287, 1553, 1706
BseGI GGATG 4 cut(s) 202, 678, 1033, 1354
BseLI CCNNNNNNNGG 2 cut(s) 610, 624
BseMI GCAATG 3 cut(s) 1186, 1469, 1509
BseMII CTCAG 2 cut(s) 1073, 1466
BseNI ACTGG 2 cut(s) 696, 1395
BseRI GAGGAG 2 cut(s) 210, 789
BseSI GKGCMC 2 cut(s) 542, 732
BseXI GCAGC 2 cut(s) 1291, 1322
BsgI GTGCAG 1 cut(s) 1394
BshFI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BshNI GGYRCC 2 cut(s) 759, 1688
BsiHKAI GWGCWC 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 1147, 1287, 1358, 1662
BslFI GGGAC 3 cut(s) 1304, 1620, 1723
BslI CCNNNNNNNGG 2 cut(s) 610, 624
BsmAI GTCTC 4 cut(s) 589, 895, 1062, 1460
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 3 cut(s) 1304, 1620, 1723
BsmI GAATGC 1 cut(s) 1338
BsnI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
Bsp1286I GDGCHC 3 cut(s) 542, 732, 1120
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
BspACI CCGC 2 cut(s) 27, 1084
BspANI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BspCNI CTCAG 2 cut(s) 1072, 1467
BspLI GGNNCC 4 cut(s) 616, 761, 931, 1690
BspMAI CTGCAG 1 cut(s) 1281
BspPI GGATC 5 cut(s) 269, 924, 937, 1544, 1652
BspT107I GGYRCC 2 cut(s) 759, 1688
BsrDI GCAATG 3 cut(s) 1186, 1469, 1509
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 2 cut(s) 696, 1395
BssECI CCNNGG 4 cut(s) 714, 1287, 1553, 1706
BssMI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
BssT1I CCWWGG 1 cut(s) 1553
Bst2UI CCWGG 2 cut(s) 491, 1707
Bst4CI ACNGT 4 cut(s) 376, 580, 1688, 1732
Bst6I CTCTTC 4 cut(s) 219, 1082, 1106, 1641
BstAUI TGTACA 1 cut(s) 98
BstC8I GCNNGC 5 cut(s) 25, 742, 1008, 1277, 1333
BstDEI CTNAG 7 cut(s) 591, 868, 1059, 1327, 1407, 1475, 1713
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 4 cut(s) 202, 678, 1033, 1354
BstKTI GATC 9 cut(s) 196, 250, 264, 472, 932, 1310, 1461, 1552, 1660
BstMAI GTCTC 4 cut(s) 589, 895, 1062, 1460
BstMBI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
BstMWI GCNNNNNNNGC 1 cut(s) 1090
BstNI CCWGG 2 cut(s) 491, 1707
BstNSI RCATGY 2 cut(s) 538, 550
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 6 cut(s) 489, 1146, 1286, 1357, 1660, 1705
BstSFI CTRYAG 2 cut(s) 228, 1277
BstSLI GKGCMC 2 cut(s) 542, 732
BstV1I GCAGC 2 cut(s) 1291, 1322
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 3 cut(s) 929, 1549, 1657
BstYI RGATCY 3 cut(s) 929, 1549, 1657
BsuRI GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 4 cut(s) 202, 678, 1033, 1354
BtsIMutI CAGTG 4 cut(s) 703, 1067, 1422, 1737
Cac8I GCNNGC 5 cut(s) 25, 742, 1008, 1277, 1333
Cfr13I GGNCC 3 cut(s) 566, 615, 996
Csp6I GTAC 7 cut(s) 37, 99, 682, 760, 1378, 1496, 1689
CviQI GTAC 7 cut(s) 37, 99, 682, 760, 1378, 1496, 1689
DdeI CTNAG 7 cut(s) 591, 868, 1059, 1327, 1407, 1475, 1713
DpnI GATC 9 cut(s) 195, 249, 263, 471, 931, 1309, 1460, 1551, 1659
DpnII GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
DrdI GACNNNNNNGTC 1 cut(s) 973
DseDI GACNNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 4 cut(s) 219, 1082, 1106, 1641
EarI CTCTTC 4 cut(s) 219, 1082, 1106, 1641
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 1553
Eco32I GATATC 1 cut(s) 1438
Eco47I GGWCC 1 cut(s) 996
Eco57I CTGAAG 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 566
EcoO65I GGTNACC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 489, 1705
EcoRV GATATC 1 cut(s) 1438
EcoT14I CCWWGG 1 cut(s) 1553
EcoT22I ATGCAT 1 cut(s) 1588
ErhI CCWWGG 1 cut(s) 1553
Esp3I CGTCTC 1 cut(s) 589
FaqI GGGAC 3 cut(s) 1304, 1620, 1723
FbaI TGATCA 1 cut(s) 1458
Fnu4HI GCNGC 2 cut(s) 1280, 1336
FokI GGATG 4 cut(s) 189, 685, 1020, 1341
Fsp4HI GCNGC 2 cut(s) 1280, 1336
FspBI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
GluI GCNGC 2 cut(s) 1280, 1336
HaeIII GGCC 6 cut(s) 321, 568, 617, 713, 744, 1093
HapII CCGG 4 cut(s) 1147, 1287, 1358, 1662
HpaII CCGG 4 cut(s) 1147, 1287, 1358, 1662
HphI GGTGA 3 cut(s) 136, 823, 1465
Hpy166II GTNNAC 1 cut(s) 1380
Hpy188I TCNGA 7 cut(s) 430, 436, 522, 788, 922, 1429, 1533
Hpy188III TCNNGA 5 cut(s) 123, 502, 803, 898, 1563
Hpy8I GTNNAC 1 cut(s) 1380
Hpy99I CGWCG 1 cut(s) 1308
HpyAV CCTTC 6 cut(s) 82, 527, 1243, 1293, 1444, 1735
HpyCH4III ACNGT 4 cut(s) 376, 580, 1688, 1732
HpyCH4IV ACGT 1 cut(s) 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 1090
HpyF3I CTNAG 7 cut(s) 591, 868, 1059, 1327, 1407, 1475, 1713
HpySE526I ACGT 1 cut(s) 598
KpnI GGTACC 2 cut(s) 763, 1692
Ksp22I TGATCA 1 cut(s) 1458
Kzo9I GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
LmnI GCTCC 4 cut(s) 310, 356, 1123, 1744
Lsp1109I GCAGC 2 cut(s) 1291, 1322
LweI GCATC 3 cut(s) 781, 1568, 1573
MaeI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 4 cut(s) 142, 154, 343, 599
MalI GATC 9 cut(s) 195, 249, 263, 471, 931, 1309, 1460, 1551, 1659
MboI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 3 cut(s) 929, 1549, 1657
MhlI GDGCHC 3 cut(s) 542, 732, 1120
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 3 cut(s) 1057, 1286, 1313
MmeI TCCRAC 1 cut(s) 853
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 1588
MscI TGGCCA 1 cut(s) 321
MseI TTAA 2 cut(s) 692, 1602
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 4 cut(s) 1147, 1287, 1358, 1662
MspR9I CCNGG 6 cut(s) 491, 1148, 1288, 1359, 1662, 1707
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 1338
MvaI CCWGG 2 cut(s) 491, 1707
MwoI GCNNNNNNNGC 1 cut(s) 1090
NciI CCSGG 4 cut(s) 1148, 1288, 1359, 1662
NdeII GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
NlaIV GGNNCC 4 cut(s) 616, 761, 931, 1690
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 2 cut(s) 142, 599
NsiI ATGCAT 1 cut(s) 1588
NspI RCATGY 2 cut(s) 538, 550
PciI ACATGT 2 cut(s) 534, 546
PctI GAATGC 1 cut(s) 1338
PfeI GAWTC 8 cut(s) 233, 431, 437, 701, 917, 953, 983, 1528
PflMI CCANNNNNTGG 1 cut(s) 624
PfoI TCCNGGA 1 cut(s) 1146
PkrI GCNGC 2 cut(s) 1281, 1337
PleI GAGTC 3 cut(s) 1056, 1286, 1313
PpsI GAGTC 3 cut(s) 1056, 1286, 1313
PscI ACATGT 2 cut(s) 534, 546
PsiI TTATAA 2 cut(s) 1160, 1520
Psp6I CCWGG 2 cut(s) 489, 1705
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 489, 1705
PspN4I GGNNCC 4 cut(s) 616, 761, 931, 1690
PspPI GGNCC 3 cut(s) 566, 615, 996
PstI CTGCAG 1 cut(s) 1281
PsuI RGATCY 3 cut(s) 929, 1549, 1657
RsaI GTAC 7 cut(s) 38, 100, 683, 761, 1379, 1497, 1690
RsaNI GTAC 7 cut(s) 37, 99, 682, 760, 1378, 1496, 1689
SaqAI TTAA 2 cut(s) 692, 1602
SatI GCNGC 2 cut(s) 1280, 1336
Sau3AI GATC 9 cut(s) 193, 247, 261, 469, 929, 1307, 1458, 1549, 1657
Sau96I GGNCC 3 cut(s) 566, 615, 996
ScaI AGTACT 1 cut(s) 1497
SchI GAGTC 3 cut(s) 1057, 1286, 1313
ScrFI CCNGG 6 cut(s) 491, 1148, 1288, 1359, 1662, 1707
SduI GDGCHC 3 cut(s) 542, 732, 1120
SfaNI GCATC 3 cut(s) 781, 1568, 1573
SfcI CTRYAG 2 cut(s) 228, 1277
SinI GGWCC 1 cut(s) 996
SmlI CTYRAG 2 cut(s) 222, 500
SmoI CTYRAG 2 cut(s) 222, 500
SsiI CCGC 2 cut(s) 27, 1084
SspI AATATT 3 cut(s) 385, 723, 1314
SspMI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
StyD4I CCNGG 6 cut(s) 489, 1146, 1286, 1357, 1660, 1705
StyI CCWWGG 1 cut(s) 1553
TaaI ACNGT 4 cut(s) 376, 580, 1688, 1732
TaiI ACGT 1 cut(s) 601
TaqI TCGA 2 cut(s) 451, 1306
TaqII GACCGA 1 cut(s) 618
TatI WGTACW 4 cut(s) 98, 681, 1377, 1495
TfiI GAWTC 8 cut(s) 233, 431, 437, 701, 917, 953, 983, 1528
Tru1I TTAA 2 cut(s) 692, 1602
Tru9I TTAA 2 cut(s) 692, 1602
TscAI CASTG 4 cut(s) 703, 1067, 1422, 1737
TseFI GTSAC 2 cut(s) 142, 599
TseI GCWGC 2 cut(s) 1279, 1335
Tsp45I GTSAC 2 cut(s) 142, 599
TspDTI ATGAA 9 cut(s) 339, 372, 429, 653, 689, 693, 1262, 1506, 1754
TspRI CASTG 4 cut(s) 703, 1067, 1422, 1737
Van91I CCANNNNNTGG 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 996
XapI RAATTY 4 cut(s) 7, 130, 1694, 1764
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 2 cut(s) 538, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XspI CTAG 6 cut(s) 273, 291, 563, 803, 1499, 1632
ZrmI AGTACT 1 cut(s) 1497
Zsp2I ATGCAT 1 cut(s) 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.