Rmu_sc0006892.1_g000006

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006892.1
Physical Location & Seq
Reverse (-)
22139 .. 24487
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006892.1_g000006.1.cds

Sequence Viewer

Length: 1197 bp
atggccgaaccaggtggctctgacaagaggagttggtgctcggtgccggagaagtttcagcttcatggagccatgttggctttgcagttcggctatgccggtttccatgtcgtctctagatttgctctcaatatgggcatttctaagcttgtctttcccgtttaccggaacatcatcgctttgcttctcctcctgccctttgcctactttctggaaaagaaggacaggcctccgatcaatctcaactttctcgttcagttcttttgccttgcgcttatcggaataacagcaaaccaaggattctacttgctgggattagacaacacatcacccacctttgcttccgctatacaaaactccgtcccagccattacctttctcatggcagtcatactcagaatcgagcaagtaagactaaaccgcaaggacggtattgcaaaggtagccggaactattttctgtgtggctggagcatcagtgattactctatacaaaggtccagccatatacagcccaacaccaccactgcagacgatgatgatgagcagtgcctcatcatcagtatcaatgtcgagtttcactactagcgccatgtcagtacttggtgatgcaaagggtaagagctggactctaggttgcctctacctgatcggccattgcctctcgtggtccgcctggctggtcctgcaaagcccggttctcaagaagtacccggcccggctctctgtcacctcctacacttgtttctttggtctaattcagttcatcattatcgctgcggttttcgagagagacgctcaggcttggatcttccacaatggtggagaagccttcagcatcctctatgcgggagtggttgcatcagggattgcattcgctgtacagatatggtgcatcgacagagggggccctgtttttgtagctgtatatcaacctgttcagactcttgttgtcgctatcatggcctcggttgctttaggcgaggagttctacttgggagggatcatcggagcggtgctgatcatagtgggactgtacgcggtgttgtggggtaaaagtgaagaaaggaagtttgctcaggcaagagttccaattcagtcgactcctagtgacagtgtgcactcaaacaacaggaaaagccaaaccaagacgtccctcactcaaccactcattcctccatccaccgaaaatgtctga

Protein Analysis

398

Amino Acids

43.18

Weight (kDa)

9.26

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011466)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1154
AccB1I GGYRCC 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 1100
AccII CGCG 1 cut(s) 1040
AciI CCGC 7 cut(s) 345, 421, 672, 779, 848, 1013, 1040
AclWI GGATC 2 cut(s) 815, 1010
AcoI YGGCCR 2 cut(s) 3, 652
AcuI CTGAAG 1 cut(s) 817
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 4 cut(s) 600, 710, 882, 1037
AfiI CCNNNNNNNGG 2 cut(s) 165, 847
AjnI CCWGG 2 cut(s) 10, 674
AleI CACNNNNGTG 1 cut(s) 819
AluBI AGCT 4 cut(s) 61, 148, 624, 923
AluI AGCT 4 cut(s) 61, 148, 624, 923
Alw21I GWGCWC 2 cut(s) 41, 1122
Alw26I GTCTC 2 cut(s) 118, 786
Alw44I GTGCAC 1 cut(s) 1118
AlwI GGATC 2 cut(s) 815, 1010
AoxI GGCC 6 cut(s) 3, 227, 652, 714, 907, 963
ApaI GGGCCC 1 cut(s) 911
ApaLI GTGCAC 1 cut(s) 1118
ApeKI GCWGC 1 cut(s) 776
AspLEI GCGC 2 cut(s) 274, 590
AspS9I GGNCC 6 cut(s) 497, 669, 682, 715, 907, 908
AsuC2I CCSGG 3 cut(s) 695, 713, 718
AsuHPI GGTGA 3 cut(s) 321, 617, 721
AvaII GGWCC 3 cut(s) 497, 669, 682
BaeGI GKGCMC 2 cut(s) 911, 1122
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 911
BauI CACGAG 1 cut(s) 664
Bbv12I GWGCWC 2 cut(s) 41, 1122
BbvI GCAGC 1 cut(s) 763
BccI CCATC 1 cut(s) 1186
BciT130I CCWGG 2 cut(s) 12, 676
BclI TGATCA 1 cut(s) 1020
BcnI CCSGG 3 cut(s) 695, 713, 718
BcoDI GTCTC 2 cut(s) 118, 786
BfaI CTAG 4 cut(s) 117, 585, 632, 1107
BfmI CTRYAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 777
BlsI GCNGC 1 cut(s) 778
BmcAI AGTACT 1 cut(s) 600
Bme1390I CCNGG 5 cut(s) 12, 676, 695, 713, 718
Bme18I GGWCC 3 cut(s) 497, 669, 682
BmgT120I GGNCC 6 cut(s) 497, 669, 682, 715, 907, 908
BmiI GGNNCC 4 cut(s) 45, 70, 908, 909
BmrFI CCNGG 5 cut(s) 12, 676, 695, 713, 718
BmsI GCATC 5 cut(s) 482, 598, 846, 869, 903
BplI GAGNNNNNCTC 4 cut(s) 613, 645, 781, 813
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 2 cut(s) 798, 1077
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 3 cut(s) 695, 713, 718
BsaHI GRCGYC 1 cut(s) 1151
BsaJI CCNNGG 2 cut(s) 295, 966
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 847
Bse118I RCCGGY 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 2 cut(s) 12, 676
BseDI CCNNGG 2 cut(s) 295, 966
BseGI GGATG 2 cut(s) 837, 1178
BseLI CCNNNNNNNGG 2 cut(s) 165, 847
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 409, 812, 1091
BseRI GAGGAG 3 cut(s) 43, 179, 998
BseSI GKGCMC 2 cut(s) 911, 1122
BseXI GCAGC 1 cut(s) 763
BseYI CCCAGC 2 cut(s) 310, 364
Bsh1236I CGCG 1 cut(s) 1040
BshFI GGCC 6 cut(s) 5, 229, 654, 716, 909, 965
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 41, 1122
BsiSI CCGG 7 cut(s) 47, 99, 166, 447, 695, 713, 718
BslFI GGGAC 3 cut(s) 347, 1044, 1138
BslI CCNNNNNNNGG 2 cut(s) 165, 847
BsmAI GTCTC 2 cut(s) 118, 786
BsmBI CGTCTC 2 cut(s) 118, 786
BsmFI GGGAC 3 cut(s) 347, 1044, 1138
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 6 cut(s) 5, 229, 654, 716, 909, 965
Bsp120I GGGCCC 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 41, 911, 1122
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 5 cut(s) 234, 648, 807, 1002, 1020
BspACI CCGC 7 cut(s) 345, 421, 672, 779, 848, 1013, 1040
BspANI GGCC 6 cut(s) 5, 229, 654, 716, 909, 965
BspCNI CTCAG 3 cut(s) 408, 811, 1090
BspFNI CGCG 1 cut(s) 1040
BspLI GGNNCC 4 cut(s) 45, 70, 908, 909
BspMAI CTGCAG 1 cut(s) 531
BspPI GGATC 2 cut(s) 815, 1010
BspT107I GGYRCC 1 cut(s) 43
BsrBI CCGCTC 1 cut(s) 1013
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 295, 966
BssMI GATC 5 cut(s) 234, 648, 807, 1002, 1020
BssNI GRCGYC 1 cut(s) 1151
BssSI CACGAG 1 cut(s) 664
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 12, 676
Bst4CI ACNGT 3 cut(s) 431, 1035, 1115
BstACI GRCGYC 1 cut(s) 1151
BstAUI TGTACA 1 cut(s) 880
BstDEI CTNAG 4 cut(s) 144, 395, 798, 1077
BstF5I GGATG 2 cut(s) 837, 1178
BstFNI CGCG 1 cut(s) 1040
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 2 cut(s) 274, 590
BstKTI GATC 5 cut(s) 237, 651, 810, 1005, 1023
BstMAI GTCTC 2 cut(s) 118, 786
BstMBI GATC 5 cut(s) 234, 648, 807, 1002, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 77, 443, 685, 962, 971
BstNI CCWGG 2 cut(s) 12, 676
BstSCI CCNGG 5 cut(s) 10, 674, 693, 711, 716
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 2 cut(s) 911, 1122
BstUI CGCG 1 cut(s) 1040
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 807
BstXI CCANNNNNNTGG 1 cut(s) 821
BstYI RGATCY 1 cut(s) 807
BsuRI GGCC 6 cut(s) 5, 229, 654, 716, 909, 965
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 837, 1178
BtsI GCAGTG 2 cut(s) 524, 553
BtsIMutI CAGTG 4 cut(s) 483, 524, 553, 1120
CfoI GCGC 2 cut(s) 274, 590
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 6 cut(s) 497, 669, 682, 715, 907, 908
CseI GACGC 1 cut(s) 803
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 4 cut(s) 599, 709, 881, 1036
CviAII CATG 6 cut(s) 65, 73, 107, 382, 592, 961
CviQI GTAC 4 cut(s) 599, 709, 881, 1036
DdeI CTNAG 4 cut(s) 144, 395, 798, 1077
DpnI GATC 5 cut(s) 236, 650, 809, 1004, 1022
DpnII GATC 5 cut(s) 234, 648, 807, 1002, 1020
EaeI YGGCCR 2 cut(s) 3, 652
EciI GGCGGA 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 911
Eco47I GGWCC 3 cut(s) 497, 669, 682
Eco57I CTGAAG 1 cut(s) 817
EcoO109I RGGNCCY 2 cut(s) 907, 908
EcoRII CCWGG 2 cut(s) 10, 674
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 2 cut(s) 118, 786
FaeI CATG 6 cut(s) 68, 76, 110, 385, 595, 964
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 3 cut(s) 347, 1044, 1138
FatI CATG 6 cut(s) 64, 72, 106, 381, 591, 960
FauI CCCGC 1 cut(s) 841
FbaI TGATCA 1 cut(s) 1020
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 1 cut(s) 777
FokI GGATG 2 cut(s) 824, 1165
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 1 cut(s) 777
FspBI CTAG 4 cut(s) 117, 585, 632, 1107
GlaI GCGC 2 cut(s) 273, 589
GluI GCNGC 1 cut(s) 777
GsaI CCCAGC 2 cut(s) 314, 368
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 6 cut(s) 5, 229, 654, 716, 909, 965
HapII CCGG 7 cut(s) 47, 99, 166, 447, 695, 713, 718
HgaI GACGC 1 cut(s) 803
HhaI GCGC 2 cut(s) 274, 590
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 6 cut(s) 68, 76, 110, 385, 595, 964
Hin6I GCGC 2 cut(s) 272, 588
HinP1I GCGC 2 cut(s) 272, 588
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 5 cut(s) 300, 399, 628, 943, 1102
HpaII CCGG 7 cut(s) 47, 99, 166, 447, 695, 713, 718
HphI GGTGA 3 cut(s) 321, 617, 721
Hpy166II GTNNAC 3 cut(s) 163, 1101, 1120
Hpy188I TCNGA 7 cut(s) 22, 234, 281, 398, 942, 1010, 1196
Hpy188III TCNNGA 4 cut(s) 117, 212, 703, 787
Hpy8I GTNNAC 3 cut(s) 163, 1101, 1120
HpyAV CCTTC 2 cut(s) 214, 841
HpyCH4III ACNGT 3 cut(s) 431, 1035, 1115
HpyCH4IV ACGT 1 cut(s) 1151
HpyCH4V TGCA 9 cut(s) 85, 437, 529, 611, 688, 860, 872, 894, 1120
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 443, 685, 962, 971
HpyF3I CTNAG 4 cut(s) 144, 395, 798, 1077
HpySE526I ACGT 1 cut(s) 1151
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 6 cut(s) 68, 76, 110, 385, 595, 964
HspAI GCGC 2 cut(s) 272, 588
Ksp22I TGATCA 1 cut(s) 1020
Kzo9I GATC 5 cut(s) 234, 648, 807, 1002, 1020
LmnI GCTCC 3 cut(s) 68, 470, 1010
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 5 cut(s) 482, 598, 846, 869, 903
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 4 cut(s) 117, 585, 632, 1107
MaeII ACGT 1 cut(s) 1151
MaeIII GTNAC 2 cut(s) 727, 1109
MalI GATC 5 cut(s) 236, 650, 809, 1004, 1022
MbiI CCGCTC 1 cut(s) 1013
MboI GATC 5 cut(s) 234, 648, 807, 1002, 1020
MboII GAAGA 2 cut(s) 802, 1073
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 3 cut(s) 41, 911, 1122
MluCI AATT 2 cut(s) 756, 1092
MlyI GAGTC 3 cut(s) 622, 937, 1096
MslI CAYNNNNRTG 1 cut(s) 819
MspI CCGG 7 cut(s) 47, 99, 166, 447, 695, 713, 718
MspR9I CCNGG 5 cut(s) 12, 676, 695, 713, 718
Mva1269I GAATGC 1 cut(s) 872
MvaI CCWGG 2 cut(s) 12, 676
MvnI CGCG 1 cut(s) 1040
MwoI GCNNNNNNNGC 5 cut(s) 77, 443, 685, 962, 971
NciI CCSGG 3 cut(s) 695, 713, 718
NdeII GATC 5 cut(s) 234, 648, 807, 1002, 1020
NlaIII CATG 6 cut(s) 68, 76, 110, 385, 595, 964
NlaIV GGNNCC 4 cut(s) 45, 70, 908, 909
NmuCI GTSAC 2 cut(s) 727, 1109
OliI CACNNNNGTG 1 cut(s) 819
PceI AGGCCT 1 cut(s) 229
PctI GAATGC 1 cut(s) 872
PfeI GAWTC 2 cut(s) 300, 399
PkrI GCNGC 1 cut(s) 778
PleI GAGTC 3 cut(s) 622, 937, 1096
PpsI GAGTC 3 cut(s) 622, 937, 1096
Psp6I CCWGG 2 cut(s) 10, 674
PspFI CCCAGC 2 cut(s) 310, 364
PspGI CCWGG 2 cut(s) 10, 674
PspN4I GGNNCC 4 cut(s) 45, 70, 908, 909
PspOMI GGGCCC 1 cut(s) 907
PspPI GGNCC 6 cut(s) 497, 669, 682, 715, 907, 908
PstI CTGCAG 1 cut(s) 531
PsuI RGATCY 1 cut(s) 807
RsaI GTAC 4 cut(s) 600, 710, 882, 1037
RsaNI GTAC 4 cut(s) 599, 709, 881, 1036
RseI CAYNNNNRTG 1 cut(s) 819
SalI GTCGAC 1 cut(s) 1099
SatI GCNGC 1 cut(s) 777
Sau3AI GATC 5 cut(s) 234, 648, 807, 1002, 1020
Sau96I GGNCC 6 cut(s) 497, 669, 682, 715, 907, 908
ScaI AGTACT 1 cut(s) 600
SchI GAGTC 3 cut(s) 622, 937, 1096
ScrFI CCNGG 5 cut(s) 12, 676, 695, 713, 718
SduI GDGCHC 3 cut(s) 41, 911, 1122
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 5 cut(s) 482, 598, 846, 869, 903
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 3 cut(s) 497, 669, 682
SmiMI CAYNNNNRTG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 2 cut(s) 756, 1092
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 7 cut(s) 345, 421, 672, 779, 848, 1013, 1040
SspMI CTAG 4 cut(s) 117, 585, 632, 1107
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 5 cut(s) 10, 674, 693, 711, 716
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 431, 1035, 1115
TaiI ACGT 1 cut(s) 1154
TaqI TCGA 5 cut(s) 402, 572, 786, 897, 1100
TasI AATT 2 cut(s) 756, 1092
TatI WGTACW 2 cut(s) 598, 880
TfiI GAWTC 2 cut(s) 300, 399
TscAI CASTG 4 cut(s) 483, 531, 553, 1120
TseFI GTSAC 2 cut(s) 727, 1109
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 2 cut(s) 727, 1109
TspDTI ATGAA 2 cut(s) 53, 754
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 4 cut(s) 483, 531, 553, 1120
VneI GTGCAC 1 cut(s) 1118
VpaK11BI GGWCC 3 cut(s) 497, 669, 682
XbaI TCTAGA 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 1100
XspI CTAG 4 cut(s) 117, 585, 632, 1107
ZraI GACGTC 1 cut(s) 1152
ZrmI AGTACT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.