Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007075.1

Orthogroup ID

OG0020073

Physical Location & Seq

Genomic Coordinates Forward (+)

44657 .. 45950

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ctggcccctgtccagctgctctgggtcaacttagttactgatgggttgcctgccacaccaattggttttaataagcaagattctgatgtgatgaaggctaaacctcgtaaggttaatgaagcagttgttactggatggttgttttttcgttatttggtgattggagaaccagaaaccggggttgttgtggatgaggatggaaaactagaagacagagttggagtggccttgaaaactatgatcctgctacctgtttgttcgaaacagtttaaagctgcaacggaatcacccccctatacagaaagtgtgtgcgcaggattggagcatgcacactcttttttccagtttcaaagcgcaaagacagagagagactacactttgttagatcgcaggttttgttccttggtttgggttggactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

5.68

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	1 - 55	9.8e-16	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020073)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007075.1_g000010
rosa_samantha	Rh2BG286100 Rh4AG082600 Rh4CG089900 Rh4DG134500 Rh4DG203700 Rh7CG347000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	176, 408
AgsI	TTSAA	2 cut(s)	232, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	16, 275
AluI	AGCT	2 cut(s)	16, 275
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	2 cut(s)	3, 225
ApeKI	GCWGC	2 cut(s)	16, 275
AspLEI	GCGC	2 cut(s)	314, 356
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	169, 279
AsuII	TTCGAA	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	3, 262
BccI	CCATC	3 cut(s)	35, 129, 191
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	17, 276
BlsI	GCNGC	2 cut(s)	18, 277
Bme1390I	CCNGG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	177, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 408
Bse1I	ACTGG	2 cut(s)	136, 343
BseDI	CCNNGG	2 cut(s)	177, 402
BseGI	GGATG	3 cut(s)	140, 196, 202
BseLI	CCNNNNNNNGG	2 cut(s)	176, 408
BseNI	ACTGG	2 cut(s)	136, 343
BseXI	GCAGC	2 cut(s)	3, 262
BshFI	GGCC	2 cut(s)	5, 227
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	176, 408
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	5, 227
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	240, 385
BspANI	GGCC	2 cut(s)	5, 227
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	136, 343
BssECI	CCNNGG	2 cut(s)	177, 402
BssMI	GATC	2 cut(s)	240, 385
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	51, 327
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	140, 196, 202
BstHHI	GCGC	2 cut(s)	314, 356
BstKTI	GATC	2 cut(s)	243, 388
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	240, 385
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	3, 262
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	5, 227
BtsCI	GGATG	3 cut(s)	140, 196, 202
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	51, 327
CfoI	GCGC	2 cut(s)	314, 356
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	5 cut(s)	5, 16, 98, 227, 275
CviKI_1	RGCY	5 cut(s)	5, 16, 98, 227, 275
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	2 cut(s)	242, 387
DpnII	GATC	2 cut(s)	240, 385
DraI	TTTAAA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	239, 297, 327
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	17, 276
FokI	GGATG	3 cut(s)	147, 203, 209
Fsp4HI	GCNGC	2 cut(s)	17, 276
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	2 cut(s)	313, 355
GluI	GCNGC	2 cut(s)	17, 276
HaeIII	GGCC	2 cut(s)	5, 227
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	2 cut(s)	314, 356
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	312, 354
HinP1I	GCGC	2 cut(s)	312, 354
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	80, 284, 417
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	169, 279
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	278, 329
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	312, 354
Kzo9I	GATC	2 cut(s)	240, 385
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	2 cut(s)	3, 262
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	34, 127
MalI	GATC	2 cut(s)	242, 387
MboI	GATC	2 cut(s)	240, 385
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	60
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	2 cut(s)	199, 394
MnlI	CCTC	2 cut(s)	114, 187
MseI	TTAA	3 cut(s)	69, 114, 270
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	178
MunI	CAATTG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	240, 385
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	313
NspI	RCATGY	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	80, 284
PkrI	GCNGC	2 cut(s)	18, 277
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	69, 114, 270
SatI	GCNGC	2 cut(s)	17, 276
Sau3AI	GATC	2 cut(s)	240, 385
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	6 cut(s)	18, 106, 114, 253, 277, 395
SfuI	TTCGAA	1 cut(s)	260
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 284
Tru1I	TTAA	3 cut(s)	69, 114, 270
Tru9I	TTAA	3 cut(s)	69, 114, 270
TseI	GCWGC	2 cut(s)	16, 275
TspDTI	ATGAA	2 cut(s)	107, 132
TspGWI	ACGGA	1 cut(s)	296
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.