Rh2BG286100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020073
Physical Location & Seq
Reverse (-)
31476261 .. 31477292
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG286100.1

Sequence Viewer

Length: 273 bp
ATGGCCAGCAAGATCGGCTCTGTGACTCGACTTGTTCTCCAACTCATTCCAGGGGATCTCGAGCCTCTCGTCATCGCCGTTGAAGACCTCAACGTGCAGCAACAGATTCATTTCATCTGGTCGTCGTCTAGGCTCCACCATCGGCGCAGAAGAGAGGGAGATAGGGATGGAGAGACATTGGTACAAAGTGTTCGCATAATCGGTCGTTTAAGAACGATGAGAGAAACAAAGCAAAAGAGGGAAAAAGAGGATGCCTTGCATAAAATACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.5

Weight (kDa)

10.44

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020073)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007075.1_g000010
rosa_samantha Rh2BG286100 Rh4AG082600 Rh4CG089900 Rh4DG134500 Rh4DG203700 Rh7CG347000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 59
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 147, 161
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 172, 256
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 2 cut(s) 12, 55
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 134
BspPI GGATC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 12, 55
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 172, 256
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 2 cut(s) 15, 58
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 12, 55
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 2 cut(s) 172, 256
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 4 cut(s) 5, 18, 64, 133
CviKI_1 RGCY 4 cut(s) 5, 18, 64, 133
CviQI GTAC 1 cut(s) 182
DpnI GATC 2 cut(s) 14, 57
DpnII GATC 2 cut(s) 12, 55
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 49
FaiI YATR 2 cut(s) 197, 261
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 179, 263
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 147
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 2 cut(s) 25, 106
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 97, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 12, 55
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 19, 36, 63, 103
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 14, 57
MboI GATC 2 cut(s) 12, 55
MboII GAAGA 2 cut(s) 95, 162
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 75, 98, 148, 231, 241
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 2 cut(s) 12, 55
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 134
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 12, 55
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 51
SetI ASST 2 cut(s) 90, 96
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 28, 60
TaqII GACCGA 1 cut(s) 191
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 98, 103
XhoI CTCGAG 1 cut(s) 59
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.