Rh4DG203700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0020073
Physical Location & Seq
Reverse (-)
39617557 .. 39629814
12258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG203700.1

Sequence Viewer

Length: 573 bp
ATGTTGCTGAACACCCAAGCCTTGACGGGTAGGGTTAGGAGGTTGAGTCTAGCCATCTGCGACTCGACTCGTTTGGGGAATCTCGAGCCTCTCGTCGTCTCCGTCGAAGACCTCGATATGCAGCAACAAATTCATTCTGTGCCGGTCGTTGTCCAGGCTCCACCAGACATGTTGAAAACTCAGCTCGATCTGTTTTCTGGGTTCTCAGTTTCAACTCCACCTTTCAGGAGAAGCAAAAGAAAGAGTAGCAATGGAAAAGATTTGGATGAGAAAGGGAGAGAAGCTAGTGAACTCGAATTTTCTCCACAATCTACTAGTGAGCCTGAGTTAAATGTTAACCAGTTGGATAGTGCACTAAAAGACAATGTGGCAGCTGAAACTGATGCTCCTGCTGAATATAGTGAAAAAGAGGCATTTGATGATCATCAGTGCAATGGTAAAGAACCAATCATCTGTCAGAGCTCTTTGAAAGATGACTGTACAGATAAAAGCATAGAAAGCCTTGATGAGGGAAAGACAGTATTAATGAATGAAGCAATTGGAGAAGAAGCAAAGGATGCATTGGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.89

Weight (kDa)

4.55

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020073)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007075.1_g000010
rosa_samantha Rh2BG286100 Rh4AG082600 Rh4CG089900 Rh4DG134500 Rh4DG203700 Rh7CG347000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 129, 296
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 3 cut(s) 175, 213, 469
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 4 cut(s) 184, 284, 374, 462
AluI AGCT 4 cut(s) 184, 284, 374, 462
Alw21I GWGCWC 2 cut(s) 355, 464
Alw26I GTCTC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 121, 371
ApoI RAATTY 2 cut(s) 129, 296
AseI ATTAAT 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 355, 464
BbvI GCAGC 2 cut(s) 133, 383
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 3 cut(s) 50, 285, 315
BisI GCNGC 2 cut(s) 122, 372
BlsI GCNGC 2 cut(s) 123, 373
Bme1390I CCNGG 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 2 cut(s) 373, 547
BpiI GAAGAC 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 423
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 370, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 2 cut(s) 256, 439
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 271, 562
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMI GCAATG 2 cut(s) 256, 439
BseMII CTCAG 3 cut(s) 194, 219, 315
BseNI ACTGG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 2 cut(s) 133, 383
Bsh1285I CGRYCG 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 355, 464
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 355, 464
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 2 cut(s) 187, 421
BspCNI CTCAG 3 cut(s) 193, 218, 316
BspLI GGNNCC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 256, 439
BsrFI RCCGGY 1 cut(s) 142
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 2 cut(s) 187, 421
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 479, 520
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 479
BstDEI CTNAG 3 cut(s) 180, 205, 324
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 2 cut(s) 271, 562
BstKTI GATC 2 cut(s) 190, 424
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 2 cut(s) 187, 421
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 498, 557
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 133, 383
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 271, 562
BtsIMutI CAGTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 142
Csp6I GTAC 1 cut(s) 480
CviAII CATG 1 cut(s) 169
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 3 cut(s) 180, 205, 324
DpnI GATC 2 cut(s) 189, 423
DpnII GATC 2 cut(s) 187, 421
Ecl136II GAGCTC 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 464
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 119, 170, 399, 494
FatI CATG 1 cut(s) 168
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 122, 372
FokI GGATG 2 cut(s) 278, 569
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 122, 372
FspBI CTAG 3 cut(s) 50, 285, 315
GluI GCNGC 2 cut(s) 122, 372
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 4 cut(s) 46, 62, 67, 79
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 3 cut(s) 290, 337, 353
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 2 cut(s) 83, 226
Hpy8I GTNNAC 3 cut(s) 290, 337, 353
Hpy99I CGWCG 2 cut(s) 98, 107
HpyCH4III ACNGT 2 cut(s) 479, 520
HpyCH4V TGCA 4 cut(s) 121, 353, 432, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 498, 557
HpyF3I CTNAG 3 cut(s) 180, 205, 324
Hsp92II CATG 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 421
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 187, 421
LmnI GCTCC 2 cut(s) 163, 391
LpnPI CCDG 9 cut(s) 140, 156, 167, 177, 183, 211, 336, 353, 402
Lsp1109I GCAGC 2 cut(s) 133, 383
LweI GCATC 2 cut(s) 373, 547
MaeI CTAG 3 cut(s) 50, 285, 315
MalI GATC 2 cut(s) 189, 423
MboI GATC 2 cut(s) 187, 421
MboII GAAGA 2 cut(s) 119, 557
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 2 cut(s) 355, 464
MluCI AATT 3 cut(s) 129, 296, 537
MlyI GAGTC 3 cut(s) 55, 56, 61
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 33, 99, 122, 403, 502
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 3 cut(s) 329, 336, 524
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 155
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 498, 557
NdeII GATC 2 cut(s) 187, 421
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 83
PciI ACATGT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 99, 102, 111
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 123, 373
PleI GAGTC 3 cut(s) 54, 56, 61
PpsI GAGTC 3 cut(s) 54, 56, 61
PscI ACATGT 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SacI GAGCTC 1 cut(s) 464
SaqAI TTAA 3 cut(s) 329, 336, 524
SatI GCNGC 2 cut(s) 122, 372
Sau3AI GATC 2 cut(s) 187, 421
SchI GAGTC 3 cut(s) 55, 56, 61
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 355, 464
SetI ASST 7 cut(s) 44, 114, 186, 223, 286, 376, 464
SfaNI GCATC 2 cut(s) 373, 547
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 3 cut(s) 129, 296, 537
SspMI CTAG 3 cut(s) 50, 285, 315
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 479, 520
TaqI TCGA 6 cut(s) 65, 84, 105, 114, 186, 294
TasI AATT 3 cut(s) 129, 296, 537
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 3 cut(s) 329, 336, 524
Tru9I TTAA 3 cut(s) 329, 336, 524
TscAI CASTG 1 cut(s) 434
TseI GCWGC 2 cut(s) 121, 371
TspDTI ATGAA 3 cut(s) 122, 542, 546
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 351
VspI ATTAAT 1 cut(s) 524
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 2 cut(s) 129, 296
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 3 cut(s) 50, 285, 315
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.