Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020073

Physical Location & Seq

Genomic Coordinates Forward (+)

17223582 .. 17227740

Gene Structure 4159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG082600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACATGTTGAAAACTCAGCTCGATCTGTTTTCTGGGTTCTCAGTTTCAACTCCACCTTTCAGGAGAAGCAAAAGAAAGAGTAGCAATGGAAAAGATTTGGATGAGAAAGGGAGAGAAGCTAGTGAACTCGAGTATGCATGTAGCAGATTTTTCCATTACGGAATCAAAAATCAACTGGTCCAGCTGCTCTGGGTCAACTTAGTTACTGATGGGTTGCCTGCCACAGCAATTGGTTTTAATAAGCAAGATTCTGATGTGATGAAGGCTAAACCTCGTAAGGTTAATGAAGTAGTTGTTACTGGATGGTTGTTTTTTCGTTATTTGGTGATTGGAGAACCAGAAACCGGGGTTGTTGTGGATGAGGATGGAAAACTAGAAGACAGAGTTGGAGTGGCCTTGAAATGTCTTCCAAACTATGATCCTGCTACCTGTTTGTTCGAAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

5.88

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	61 - 112	5.1e-15	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020073)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007075.1_g000010
rosa_samantha	Rh2BG286100 Rh4AG082600 Rh4CG089900 Rh4DG134500 Rh4DG203700 Rh7CG347000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	3 cut(s)	13, 51, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	3 cut(s)	22, 122, 187
AluI	AGCT	3 cut(s)	22, 122, 187
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	387, 401
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	3 cut(s)	206, 300, 362
BcnI	CCSGG	1 cut(s)	349
BfaI	CTAG	2 cut(s)	123, 377
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	387, 401
Bpu14I	TTCGAA	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	183, 307
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	4 cut(s)	109, 311, 367, 373
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	32, 57
BseNI	ACTGG	2 cut(s)	183, 307
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	347
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	25, 421
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	2 cut(s)	31, 56
BspPI	GGATC	1 cut(s)	416
BspT104I	TTCGAA	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	183, 307
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	25, 421
Bst4CI	ACNGT	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	18, 43, 202
BstF5I	GGATG	4 cut(s)	109, 311, 367, 373
BstKTI	GATC	2 cut(s)	28, 424
BstMBI	GATC	2 cut(s)	25, 421
BstNSI	RCATGY	2 cut(s)	10, 144
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	2 cut(s)	387, 401
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	4 cut(s)	109, 311, 367, 373
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	7, 141
CviJI	RGCY	5 cut(s)	22, 122, 187, 269, 398
CviKI_1	RGCY	5 cut(s)	22, 122, 187, 269, 398
DdeI	CTNAG	3 cut(s)	18, 43, 202
DpnI	GATC	2 cut(s)	27, 423
DpnII	GATC	2 cut(s)	25, 421
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	142
FaeI	CATG	2 cut(s)	10, 144
FaiI	YATR	4 cut(s)	8, 138, 142, 420
FatI	CATG	2 cut(s)	6, 140
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	4 cut(s)	116, 318, 374, 380
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	2 cut(s)	123, 377
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	10, 144
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	165, 251
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	128, 199
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	128, 199
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	18, 43, 202
Hsp92II	CATG	2 cut(s)	10, 144
Kzo9I	GATC	2 cut(s)	25, 421
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	123, 377
MaeIII	GTNAC	2 cut(s)	205, 298
MalI	GATC	2 cut(s)	27, 423
MboI	GATC	2 cut(s)	25, 421
MboII	GAAGA	2 cut(s)	392, 401
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	2 cut(s)	285, 358
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	240, 285, 451
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	231
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	25, 421
NlaIII	CATG	2 cut(s)	10, 144
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	2 cut(s)	10, 144
NspV	TTCGAA	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	165, 251
PkrI	GCNGC	1 cut(s)	189
PscI	ACATGT	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	181
PspXI	VCTCGAGB	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	240, 285, 451
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	25, 421
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	7 cut(s)	24, 61, 124, 189, 277, 285, 434
Sfr274I	CTCGAG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	123, 377
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	3 cut(s)	24, 132, 441
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	165, 251
Tru1I	TTAA	3 cut(s)	240, 285, 451
Tru9I	TTAA	3 cut(s)	240, 285, 451
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	278, 303
TspGWI	ACGGA	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	2 cut(s)	10, 144
XhoI	CTCGAG	1 cut(s)	131
XspI	CTAG	2 cut(s)	123, 377
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.