Rh7CG347000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020073
Physical Location & Seq
Reverse (-)
39234121 .. 39248884
14764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG347000.1

Sequence Viewer

Length: 261 bp
ATGGATAAAATTCATAATCGTATATGGTGGTATCCACTTCTCAAGGTTTTCCACCATTACACGGAATTCCTCCAATATCGACATCGTTCGATCCCTTTCAGAAGAAATTTCACAAAAAATACAAGATTGGACTCTGCGACTCAACTCGTTCTCCAACTAGTTTCGGGGGATCTCGGGCCTCTGGTCGTCGCCGTCGAAGACCTCTACGTGCAGCAGCAGATTCATTCCATGCCAGTGGTCGTCCAAGCTCCGCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.21

Weight (kDa)

9.6

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020073)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007075.1_g000010
rosa_samantha Rh2BG286100 Rh4AG082600 Rh4CG089900 Rh4DG134500 Rh4DG203700 Rh7CG347000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 2 cut(s) 85, 177
AcsI RAATTY 3 cut(s) 9, 65, 106
AfiI CCNNNNNNNGG 1 cut(s) 61
AhlI ACTAGT 1 cut(s) 157
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwI GGATC 2 cut(s) 85, 177
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 211, 214
ApoI RAATTY 3 cut(s) 9, 65, 106
AspS9I GGNCC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 223, 226
BceAI ACGGC 1 cut(s) 176
BciVI GTATCC 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 158, 254
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 212, 215
BlsI GCNGC 2 cut(s) 213, 216
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 223, 226
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 2 cut(s) 90, 169
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 85, 177
BsrI ACTGG 1 cut(s) 233
BssMI GATC 2 cut(s) 90, 169
BstBAI YACGTR 1 cut(s) 208
BstKTI GATC 2 cut(s) 93, 172
BstMBI GATC 2 cut(s) 90, 169
BstV1I GCAGC 2 cut(s) 223, 226
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 229
CviJI RGCY 2 cut(s) 178, 248
CviKI_1 RGCY 2 cut(s) 178, 248
DpnI GATC 2 cut(s) 92, 171
DpnII GATC 2 cut(s) 90, 169
Eco88I CYCGRG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 65
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 15, 23, 25, 230
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 212, 215
Fsp4HI GCNGC 2 cut(s) 212, 215
FspBI CTAG 2 cut(s) 158, 254
GluI GCNGC 2 cut(s) 212, 215
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 1 cut(s) 232
HinfI GANTC 3 cut(s) 131, 139, 220
Hpy188I TCNGA 1 cut(s) 101
Hpy99I CGWCG 2 cut(s) 191, 197
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 90, 169
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 2 cut(s) 167, 246
Lsp1109I GCAGC 2 cut(s) 223, 226
MaeI CTAG 2 cut(s) 158, 254
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 92, 171
MboI GATC 2 cut(s) 90, 169
MboII GAAGA 2 cut(s) 114, 209
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 9, 65, 106
MlyI GAGTC 2 cut(s) 125, 133
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 80, 189, 212
MslI CAYNNNNRTG 1 cut(s) 233
NdeII GATC 2 cut(s) 90, 169
NlaIII CATG 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 213, 216
PleI GAGTC 2 cut(s) 125, 133
PpsI GAGTC 2 cut(s) 125, 133
Ppu21I YACGTR 1 cut(s) 208
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 233
SatI GCNGC 2 cut(s) 212, 215
Sau3AI GATC 2 cut(s) 90, 169
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 125, 133
SetI ASST 4 cut(s) 48, 204, 210, 250
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 3 cut(s) 9, 65, 106
SsiI CCGC 1 cut(s) 251
SspMI CTAG 2 cut(s) 158, 254
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 79, 89, 195
TasI AATT 3 cut(s) 9, 65, 106
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 1 cut(s) 240
TseI GCWGC 2 cut(s) 211, 214
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 240
XapI RAATTY 3 cut(s) 9, 65, 106
XspI CTAG 2 cut(s) 158, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.