Rmu_sc0007946.1_g000002

callose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007946.1
OG0020564
Physical Location & Seq
Reverse (-)
2761 .. 4004
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007946.1_g000002.1.cds

Sequence Viewer

Length: 501 bp
atgaagattctggagaactcctccatacataacactaaggtttctggagaggctttggctatggagtctgcttttcaactgggcttgttaccaatgcttcccattgtgatggaaattggtctggaaaaggagttccacaatgccttggaaaaggaacaccccaaacacatgggtatgagcctatcaggggaagaaggtaacacttgcagtccacttctttgtttacctcctggaatcctggatatagctcaccgcaacaaagactactggtttatggactttcatgggctcttgtggtatctgtcctttctcatctttaagagacgaagattttacaccaactttcagctcgagctcaggatactgaagttgcttctttttcttggctacatgtcaatcatgagcgtcttgtttgtattttgtgatctcactatttcagatctatttgctgctatgcttgctttctttcccacagggtgggcccctcttcaggtaagttga

Protein Analysis

166

Amino Acids

19.05

Weight (kDa)

6.04

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020564)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048961
rosa_laevigata RLG00000034571
rosa_multiflora Rmu_sc0007946.1_g000002
rosa_rugosa Rorug05G0241400
rosa_samantha Rh5AG321500
rosa_wichuraiana Rw5G030340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 477
AciI CCGC 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 386, 473
AdeI CACNNNGTG 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 187, 477, 490
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 2 cut(s) 229, 237
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 248, 349, 355
AluI AGCT 3 cut(s) 248, 349, 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 1 cut(s) 480
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 480, 481
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BanII GRGCYC 3 cut(s) 291, 357, 484
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 436
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 231, 239
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 354
BglII AGATCT 1 cut(s) 439
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 231, 239
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 480, 481
BmiI GGNNCC 2 cut(s) 482, 483
BmrFI CCNGG 2 cut(s) 231, 239
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 32, 66
Bpu10I CCTNAGC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 477, 490
Bse1I ACTGG 2 cut(s) 84, 272
BseBI CCWGG 2 cut(s) 231, 239
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 187, 477, 490
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 84, 272
BseRI GAGGAG 1 cut(s) 10
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 1 cut(s) 436
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 187, 477, 490
BsmAI GTCTC 1 cut(s) 316
BsmBI CGTCTC 1 cut(s) 316
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 350
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 291, 357, 484
Bsp143I GATC 2 cut(s) 424, 439
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 2 cut(s) 482, 483
BsrI ACTGG 2 cut(s) 84, 272
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 424, 439
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 231, 239
Bst6I CTCTTC 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 36, 356
BstKTI GATC 2 cut(s) 427, 442
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 424, 439
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 2 cut(s) 231, 239
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 2 cut(s) 229, 237
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 2 cut(s) 109, 169
BstYI RGATCY 1 cut(s) 439
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 459
CciI TCATGA 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 480, 481
CseI GACGC 1 cut(s) 394
CviAII CATG 4 cut(s) 169, 284, 391, 400
DdeI CTNAG 2 cut(s) 36, 356
DpnI GATC 2 cut(s) 426, 441
DpnII GATC 2 cut(s) 424, 439
DraIII CACNNNGTG 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 3 cut(s) 291, 357, 484
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 386, 473
Eco88I CYCGRG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 229, 237
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 3 cut(s) 291, 357, 484
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 4 cut(s) 172, 287, 394, 403
FatI CATG 4 cut(s) 168, 283, 390, 399
Fnu4HI GCNGC 1 cut(s) 450
FriOI GRGCYC 3 cut(s) 291, 357, 484
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 2 cut(s) 32, 66
HaeIII GGCC 1 cut(s) 482
HgaI GACGC 1 cut(s) 394
Hin1II CATG 4 cut(s) 172, 287, 394, 403
HinfI GANTC 3 cut(s) 7, 65, 234
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 212, 224
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 5 cut(s) 11, 45, 122, 358, 400
Hpy8I GTNNAC 2 cut(s) 212, 224
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 36, 356
Hsp92II CATG 4 cut(s) 172, 287, 394, 403
Kzo9I GATC 2 cut(s) 424, 439
Lsp1109I GCAGC 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 87, 197
MalI GATC 2 cut(s) 426, 441
MboI GATC 2 cut(s) 424, 439
MboII GAAGA 4 cut(s) 16, 203, 339, 479
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 291, 357, 484
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 4 cut(s) 31, 43, 237, 495
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 107, 173
MspR9I CCNGG 2 cut(s) 231, 239
MvaI CCWGG 2 cut(s) 231, 239
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 2 cut(s) 424, 439
NlaIII CATG 4 cut(s) 172, 287, 394, 403
NlaIV GGNNCC 2 cut(s) 482, 483
NspI RCATGY 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 350
PagI TCATGA 1 cut(s) 399
PciI ACATGT 1 cut(s) 390
PfeI GAWTC 2 cut(s) 7, 234
PflMI CCANNNNNTGG 1 cut(s) 477
PfoI TCCNGGA 2 cut(s) 229, 237
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 229, 237
PspGI CCWGG 2 cut(s) 229, 237
PspN4I GGNNCC 2 cut(s) 482, 483
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 2 cut(s) 480, 481
PspXI VCTCGAGB 1 cut(s) 350
PsuI RGATCY 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 107, 173
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 2 cut(s) 424, 439
Sau96I GGNCC 2 cut(s) 480, 481
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 231, 239
SduI GDGCHC 3 cut(s) 291, 357, 484
SetI ASST 7 cut(s) 42, 199, 229, 250, 351, 357, 495
Sfr274I CTCGAG 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 107, 173
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 253
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 229, 237
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 7, 234
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 2 cut(s) 17, 272
Van91I CCANNNNNTGG 1 cut(s) 477
XceI RCATGY 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.