Rh5AG321500

callose synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
47706599 .. 47707915
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG321500.1

Sequence Viewer

Length: 357 bp
ATGGGTATGAGCCTATCAGGGGAAGAAGGTAACACTTGCAGTCCACTTCTTTGTTTACCTCCTGGAATCCTGGATATAGCTCACTGCAACAAAGACTACTGGTTTATGGACTTTCATGGGCTCTTGTGGTATCTGTCCTTTCTCATCTTTAAGATGGTTTCTATGCAGAGACGAAGATTTTACACCAACTTTCAGCTCGAGTTCAGGATACTGAAGTTGCTTCTTTTTCTTGGCTACATGTCAATCATGAGCGTCGTGTTTGTATTTTGTGATCTCACTATTTCAGATCTATTTGCTGCTATGCTTGCTTTCTTTCCCACAGGGTGGGCCCCTCTTCAGGACAAGTATGCAGCGTGA

Protein Analysis

118

Amino Acids

13.69

Weight (kDa)

6.02

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020564)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048961
rosa_laevigata RLG00000034571
rosa_multiflora Rmu_sc0007946.1_g000002
rosa_rugosa Rorug05G0241400
rosa_samantha Rh5AG321500
rosa_wichuraiana Rw5G030340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 233, 320
AdeI CACNNNGTG 1 cut(s) 324
AfiI CCNNNNNNNGG 3 cut(s) 19, 324, 337
AflIII ACRYGT 1 cut(s) 237
AjnI CCWGG 2 cut(s) 61, 69
AluBI AGCT 2 cut(s) 80, 196
AluI AGCT 2 cut(s) 80, 196
Alw26I GTCTC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 327
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 296, 350
AspS9I GGNCC 2 cut(s) 327, 328
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 200, 233
BanII GRGCYC 2 cut(s) 123, 331
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 63, 71
BciVI GTATCC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 201
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 297, 351
BlsI GCNGC 2 cut(s) 298, 352
Bme1390I CCNGG 2 cut(s) 63, 71
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 327, 328
BmiI GGNNCC 2 cut(s) 329, 330
BmrFI CCNGG 2 cut(s) 63, 71
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 324, 337
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 63, 71
BseLI CCNNNNNNNGG 3 cut(s) 19, 324, 337
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 19, 324, 337
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 197
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 123, 331
Bsp143I GATC 2 cut(s) 271, 286
BspANI GGCC 1 cut(s) 329
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 329, 330
BsrI ACTGG 1 cut(s) 104
BssMI GATC 2 cut(s) 271, 286
Bst2UI CCWGG 2 cut(s) 63, 71
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 306
BstKTI GATC 2 cut(s) 274, 289
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 271, 286
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 63, 71
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 61, 69
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 327, 328
CseI GACGC 1 cut(s) 241
CviAII CATG 3 cut(s) 116, 238, 247
CviJI RGCY 6 cut(s) 12, 80, 121, 196, 234, 329
CviKI_1 RGCY 6 cut(s) 12, 80, 121, 196, 234, 329
DpnI GATC 2 cut(s) 273, 288
DpnII GATC 2 cut(s) 271, 286
DraIII CACNNNGTG 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco24I GRGCYC 2 cut(s) 123, 331
Eco57I CTGAAG 2 cut(s) 233, 320
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 61, 69
EcoT38I GRGCYC 2 cut(s) 123, 331
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 119, 241, 250
FaiI YATR 9 cut(s) 8, 77, 107, 117, 164, 239, 248, 302, 348
FatI CATG 3 cut(s) 115, 237, 246
Fnu4HI GCNGC 2 cut(s) 297, 351
FriOI GRGCYC 2 cut(s) 123, 331
Fsp4HI GCNGC 2 cut(s) 297, 351
GluI GCNGC 2 cut(s) 297, 351
HaeIII GGCC 1 cut(s) 329
HgaI GACGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 119, 241, 250
HinfI GANTC 1 cut(s) 66
Hpy166II GTNNAC 2 cut(s) 44, 56
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 205, 247, 338
Hpy8I GTNNAC 2 cut(s) 44, 56
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 39, 87, 166, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 3 cut(s) 119, 241, 250
Kzo9I GATC 2 cut(s) 271, 286
LpnPI CCDG 9 cut(s) 3, 48, 56, 75, 83, 85, 190, 306, 323
Lsp1109I GCAGC 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 273, 288
MboI GATC 2 cut(s) 271, 286
MboII GAAGA 3 cut(s) 35, 186, 326
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 123, 331
MnlI CCTC 2 cut(s) 69, 342
MseI TTAA 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 63, 71
MvaI CCWGG 2 cut(s) 63, 71
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 271, 286
NlaIII CATG 3 cut(s) 119, 241, 250
NlaIV GGNNCC 2 cut(s) 329, 330
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 324
PfoI TCCNGGA 2 cut(s) 61, 69
PkrI GCNGC 2 cut(s) 298, 352
PscI ACATGT 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 61, 69
PspGI CCWGG 2 cut(s) 61, 69
PspN4I GGNNCC 2 cut(s) 329, 330
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 327, 328
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 1 cut(s) 286
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 297, 351
Sau3AI GATC 2 cut(s) 271, 286
Sau96I GGNCC 2 cut(s) 327, 328
ScrFI CCNGG 2 cut(s) 63, 71
SduI GDGCHC 2 cut(s) 123, 331
SetI ASST 4 cut(s) 31, 61, 82, 198
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 61, 69
TaqI TCGA 1 cut(s) 198
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 89
TseI GCWGC 2 cut(s) 296, 350
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.