Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008218.1

Orthogroup ID

OG0008244

Physical Location & Seq

Genomic Coordinates Reverse (-)

23408 .. 25390

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008218.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggagacatttgtgagactcatttccatggctcctctgtttctgcttctctgctttcctctggctctggctggtcatgactatggcgcagctctcagcaagagcattctcttctttgaagctcagagatctggtgtccttccccgtaaccaaagggtcacttggagatccaactccggcttgtatgatggcaaggccagcggggtggatcttgttgggggttactatgacgcaggggacaatgtgaaatttgggcttcccatggcgttcactgttactatgatgtcctggagtataatagagtacggaaagcaaatggcttcaagcggtgaacttgggcatgccatggacgctgtcaagtggggcactgactacttcattaaagctcacccagaacccaacgttctctatggagaggtcggagacgggaacagtgaccactactgctggcagaggccggaggacatgaccaccgaccgccacgcttacaagatcagcccgagtaaccccgggtcggatctcgccggagaaaccgccgccgccatggccgccgcctccattgtgttccaccgcaccaaccccgcctactcccgcgagctcttacagcatgcgtaccagctgtttgattttgctgacaagtacaggggcaaatatgacagcagcattacagttgctcaaaagtactaccgatccatcagtggctacaatgatgagttgctttgggccgctgcttggagccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM49 Glyco_hydro_9

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

5.78

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64390 AT4G11050 AT4G11050 AT4G11050
fragaria_vesca	FvH4_5g04490 FvH4_5g04490 FvH4_5g04490
malus_domestica	MD06G1105900.v1.1 MD14G1128000.v1.1
prunus_persica	Prupe.5G118000_v2.0.a1
pyrus_communis	pycom06g10020
rosa_chinensis	RchiOBHm_Chr7g0194991
rosa_laevigata	RLG00000004153
rosa_multiflora	Rmu_co8181580.1_g000001 Rmu_co8419631.1_g000001 Rmu_sc0008218.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260830
rosa_rugosa	Rorug07G0019500
rosa_samantha	Rh7AG147400 Rh7BG148000 Rh7CG151600 Rh7DG148500
rosa_wichuraiana	Rw7G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	594
AclI	AACGTT	1 cut(s)	402
AclWI	GGATC	4 cut(s)	162, 216, 525, 684
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	4 cut(s)	305, 614, 641, 683
AfiI	CCNNNNNNNGG	2 cut(s)	514, 732
AgsI	TTSAA	2 cut(s)	119, 324
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	5 cut(s)	92, 122, 386, 598, 619
AluI	AGCT	5 cut(s)	92, 122, 386, 598, 619
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	2 cut(s)	10, 417
AlwI	GGATC	4 cut(s)	162, 216, 525, 684
Ama87I	CYCGRG	2 cut(s)	499, 509
AoxI	GGCC	4 cut(s)	195, 455, 546, 723
ApeKI	GCWGC	3 cut(s)	89, 660, 728
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	723
AsuC2I	CCSGG	2 cut(s)	510, 511
AsuHPI	GGTGA	2 cut(s)	341, 380
AvaI	CYCGRG	2 cut(s)	499, 509
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	3 cut(s)	101, 672, 715
BccI	CCATC	2 cut(s)	182, 701
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	2 cut(s)	510, 511
BcoDI	GTCTC	2 cut(s)	10, 417
BglI	GCCNNNNNGGC	1 cut(s)	545
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	8 cut(s)	90, 537, 540, 549, 552, 661, 726, 729
BlsI	GCNGC	8 cut(s)	91, 538, 541, 550, 553, 662, 727, 730
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	3 cut(s)	289, 510, 511
BmeT110I	CYCGRG	2 cut(s)	499, 509
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	2 cut(s)	33, 737
BmrFI	CCNGG	3 cut(s)	289, 510, 511
BpmI	CTGGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	510, 511
BsaJI	CCNNGG	6 cut(s)	27, 261, 345, 508, 509, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 732
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	6 cut(s)	27, 261, 345, 508, 509, 543
BseLI	CCNNNNNNNGG	2 cut(s)	514, 732
BseMII	CTCAG	2 cut(s)	109, 137
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	101, 672, 715
Bsh1236I	CGCG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	4 cut(s)	197, 457, 548, 725
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	2 cut(s)	499, 509
BsiSI	CCGG	4 cut(s)	177, 458, 510, 525
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	514, 732
BsmAI	GTCTC	2 cut(s)	10, 417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	4 cut(s)	197, 457, 548, 725
BsoBI	CYCGRG	2 cut(s)	499, 509
Bsp1286I	GDGCHC	2 cut(s)	368, 600
Bsp143I	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
Bsp19I	CCATGG	4 cut(s)	27, 261, 345, 543
BspANI	GGCC	4 cut(s)	197, 457, 548, 725
BspCNI	CTCAG	2 cut(s)	108, 136
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	33, 737
BspPI	GGATC	4 cut(s)	162, 216, 525, 684
BssECI	CCNNGG	6 cut(s)	27, 261, 345, 508, 509, 543
BssMI	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
BssT1I	CCWWGG	4 cut(s)	27, 261, 345, 543
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	274, 434, 670
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	5 cut(s)	199, 342, 449, 596, 609
BstDEI	CTNAG	2 cut(s)	95, 123
BstDSI	CCRYGG	4 cut(s)	27, 261, 345, 543
BstFNI	CGCG	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	6 cut(s)	131, 170, 211, 495, 520, 692
BstMAI	GTCTC	2 cut(s)	10, 417
BstMBI	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 350, 545, 548, 604
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	2 cut(s)	344, 611
BstSCI	CCNGG	3 cut(s)	287, 508, 509
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	101, 672, 715
BstX2I	RGATCY	4 cut(s)	128, 167, 208, 517
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	4 cut(s)	128, 167, 208, 517
BsuRI	GGCC	4 cut(s)	197, 457, 548, 725
BtgI	CCRYGG	4 cut(s)	27, 261, 345, 543
BtsIMutI	CAGTG	4 cut(s)	270, 366, 439, 703
Cac8I	GCNNGC	5 cut(s)	199, 342, 449, 596, 609
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	723
Cfr9I	CCCGGG	1 cut(s)	509
CseI	GACGC	2 cut(s)	239, 359
Csp6I	GTAC	4 cut(s)	304, 613, 640, 682
CviAII	CATG	8 cut(s)	28, 77, 262, 341, 346, 466, 544, 608
CviQI	GTAC	4 cut(s)	304, 613, 640, 682
DdeI	CTNAG	2 cut(s)	95, 123
DpnI	GATC	6 cut(s)	130, 169, 210, 494, 519, 691
DpnII	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	4 cut(s)	27, 261, 345, 543
Eco24I	GRGCYC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	598
Eco88I	CYCGRG	2 cut(s)	499, 509
EcoICRI	GAGCTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	4 cut(s)	27, 261, 345, 543
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	4 cut(s)	27, 261, 345, 543
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	8 cut(s)	31, 80, 265, 344, 349, 469, 547, 611
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	8 cut(s)	27, 76, 261, 340, 345, 465, 543, 607
FauI	CCCGC	3 cut(s)	194, 589, 599
Fnu4HI	GCNGC	8 cut(s)	90, 537, 540, 549, 552, 661, 726, 729
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	8 cut(s)	90, 537, 540, 549, 552, 661, 726, 729
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	8 cut(s)	90, 537, 540, 549, 552, 661, 726, 729
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	4 cut(s)	197, 457, 548, 725
HapII	CCGG	4 cut(s)	177, 458, 510, 525
HgaI	GACGC	2 cut(s)	239, 359
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	8 cut(s)	31, 80, 265, 344, 349, 469, 547, 611
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	4 cut(s)	177, 458, 510, 525
HphI	GGTGA	2 cut(s)	341, 380
Hpy166II	GTNNAC	2 cut(s)	270, 332
Hpy188I	TCNGA	3 cut(s)	126, 422, 517
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	270, 332
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	274, 434, 670
HpyCH4IV	ACGT	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 350, 545, 548, 604
HpyF3I	CTNAG	2 cut(s)	95, 123
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	8 cut(s)	31, 80, 265, 344, 349, 469, 547, 611
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
LmnI	GCTCC	2 cut(s)	37, 735
Lsp1109I	GCAGC	3 cut(s)	101, 672, 715
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	6 cut(s)	146, 157, 221, 274, 434, 503
MalI	GATC	6 cut(s)	130, 169, 210, 494, 519, 691
MboI	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	4 cut(s)	128, 167, 208, 517
MhlI	GDGCHC	2 cut(s)	368, 600
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	3 cut(s)	195, 400, 495
MnlI	CCTC	6 cut(s)	45, 69, 409, 447, 454, 565
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	26, 81
MspA1I	CMGCKG	3 cut(s)	201, 619, 728
MspI	CCGG	4 cut(s)	177, 458, 510, 525
MspR9I	CCNGG	3 cut(s)	289, 510, 511
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	5 cut(s)	198, 350, 545, 548, 604
NciI	CCSGG	2 cut(s)	510, 511
NcoI	CCATGG	4 cut(s)	27, 261, 345, 543
NdeII	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
NlaIII	CATG	8 cut(s)	31, 80, 265, 344, 349, 469, 547, 611
NlaIV	GGNNCC	2 cut(s)	33, 737
NmuCI	GTSAC	2 cut(s)	157, 434
NspI	RCATGY	2 cut(s)	344, 611
PaeI	GCATGC	2 cut(s)	344, 611
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	8 cut(s)	91, 538, 541, 550, 553, 662, 727, 730
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	33, 737
PspPI	GGNCC	1 cut(s)	723
PsuI	RGATCY	4 cut(s)	128, 167, 208, 517
PsyI	GACNNNGTC	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	4 cut(s)	305, 614, 641, 683
RsaNI	GTAC	4 cut(s)	304, 613, 640, 682
RseI	CAYNNNNRTG	2 cut(s)	26, 81
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	8 cut(s)	90, 537, 540, 549, 552, 661, 726, 729
Sau3AI	GATC	6 cut(s)	128, 167, 208, 492, 517, 689
Sau96I	GGNCC	1 cut(s)	723
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	289, 510, 511
SduI	GDGCHC	2 cut(s)	368, 600
SetI	ASST	7 cut(s)	94, 124, 388, 405, 420, 600, 621
SmaI	CCCGGG	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	26, 81
SphI	GCATGC	2 cut(s)	344, 611
Sse9I	AATT	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	287, 508, 509
StyI	CCWWGG	4 cut(s)	27, 261, 345, 543
TaaI	ACNGT	3 cut(s)	274, 434, 670
TaiI	ACGT	1 cut(s)	405
TasI	AATT	1 cut(s)	248
TatI	WGTACW	2 cut(s)	639, 681
TauI	GCSGC	5 cut(s)	539, 542, 551, 554, 728
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	4 cut(s)	277, 373, 439, 703
TseFI	GTSAC	2 cut(s)	157, 434
TseI	GCWGC	3 cut(s)	89, 660, 728
Tsp45I	GTSAC	2 cut(s)	157, 434
TspDTI	ATGAA	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	321
TspMI	CCCGGG	1 cut(s)	509
TspRI	CASTG	4 cut(s)	277, 373, 439, 703
Tth111I	GACNNNGTC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	2 cut(s)	344, 611
XmaI	CCCGGG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.