Rmu_sc0008947.1_g000010

Glucose-6-phosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008947.1
OG0006883
Physical Location & Seq
Reverse (-)
43336 .. 47963
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008947.1_g000010.1.cds

Sequence Viewer

Length: 1341 bp
ctggacaagatccagaagttctctgaaacaattcggagtggatcttgggttggagccactggaaaagcactgaaggatgttgttgctgttggtattggcggcagtttcttaggtcctctgtttgtgcatacagctcttcaaacagatccagaggctgttgaagcagcaagaggacggcagctgcatttccttgcaaatgttgatcctattgacgtcgcaagaaatattgctgggttgaacccagaaactacccttgttgtggtagtttcaaagacctttacaacagctgaaactatgttgaatgctcggacccttagggaatggatttcatcttctcttggacctgctgcagtggcaaagcatatggtagcagttagcactaatcttacgcttgtagagaagtttgggattgaccctaagaatgcttttgcattttgggactgggttggtggtcgttatagtgtttgcagtgctgtcggagtgttgcccttgtctcttcagtatgggttttcagttgttgagaaattcttaaagggagctttaagcatggatcaacatttccactcatcaccattggagaaaaatatacctgttcttttaggtctgttgagcgtatggaatgtttcgtttcttggataccctgcaagggctatcttaccttactcccaagcactggagaagcttgctcctcacattcaacaggttagcatggaaagtaatggcaagggagtatccattgatggtgtactacttccgtttgaggctggtgaaattgattttggtgaaccaggaacaaatggtcagcacagcttttaccaactaattcaccagggtcgcgttattccttgtgatttcattggtattgtgaagagtcagcaacctgtttacctgaaaggtgaactggtgagtaaccatgatgagctcatgtccaacttttttgcacagccagatgcccttgcatatgggaagaccccagaacagctgcaaaaggagaacgttgcaccgcatcttatccctcataagactttttctggaaaccggccttctcttagccttctgcttccatcactgaatgcttacaatattggacagttattggcaatctatgaacatagaattgcagtggaaggtttcgtatggggcattaattcttttgaccagtggggagtagaattggggaagtcattggcaactcaagtcagaaagcaactccatgcatctcgtaccgaaggaaaaactgttgagggctttaatttcagtactaagacgctgatgacaaagtacctggagttaagttcagatatcccttctgagctacccacacttttgccccggatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
PGI

Protein Analysis

446

Amino Acids

48.69

Weight (kDa)

6.53

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 673
AccII CGCG 1 cut(s) 837
AciI CCGC 2 cut(s) 99, 1004
AclI AACGTT 1 cut(s) 996
AclWI GGATC 5 cut(s) 4, 49, 140, 197, 558
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 2 cut(s) 92, 482
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 4 cut(s) 747, 1225, 1261, 1283
AfiI CCNNNNNNNGG 3 cut(s) 259, 646, 673
AgsI TTSAA 6 cut(s) 140, 161, 238, 270, 301, 698
AjnI CCWGG 3 cut(s) 787, 828, 1284
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AluBI AGCT 9 cut(s) 134, 181, 287, 539, 682, 810, 922, 982, 1315
AluI AGCT 9 cut(s) 134, 181, 287, 539, 682, 810, 922, 982, 1315
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 5 cut(s) 4, 49, 140, 197, 558
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 1040
ApeKI GCWGC 5 cut(s) 164, 178, 181, 347, 982
ApoI RAATTY 1 cut(s) 524
AseI ATTAAT 1 cut(s) 1146
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 113, 309, 341
AsuC2I CCSGG 1 cut(s) 1333
AsuHPI GGTGA 6 cut(s) 561, 779, 794, 818, 908, 916
AvaII GGWCC 3 cut(s) 113, 309, 341
AxyI CCTNAGG 1 cut(s) 314
BanII GRGCYC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 5 cut(s) 168, 176, 190, 334, 969
BccI CCATC 2 cut(s) 734, 1072
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 3 cut(s) 789, 830, 1286
BciVI GTATCC 2 cut(s) 629, 742
BcnI CCSGG 1 cut(s) 1333
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 352
BfuI GTATCC 2 cut(s) 629, 742
BisI GCNGC 6 cut(s) 100, 165, 179, 182, 348, 983
BlsI GCNGC 6 cut(s) 101, 166, 180, 183, 349, 984
BmcAI AGTACT 1 cut(s) 1261
Bme1390I CCNGG 4 cut(s) 789, 830, 1286, 1333
Bme18I GGWCC 3 cut(s) 113, 309, 341
BmgT120I GGNCC 3 cut(s) 113, 309, 341
BmiI GGNNCC 2 cut(s) 55, 311
BmrFI CCNGG 4 cut(s) 789, 830, 1286, 1333
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 3 cut(s) 940, 1015, 1226
BmuI ACTGGG 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 974
BpmI CTGGAG 2 cut(s) 695, 1307
BpuEI CTTGAG 1 cut(s) 1179
BpuMI CCSGG 1 cut(s) 1333
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 829, 1331
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 646, 673
Bse118I RCCGGY 1 cut(s) 1038
Bse1I ACTGG 5 cut(s) 64, 446, 678, 906, 1159
Bse21I CCTNAGG 1 cut(s) 314
BseBI CCWGG 3 cut(s) 789, 830, 1286
BseDI CCNNGG 2 cut(s) 829, 1331
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 259, 646, 673
BseMII CTCAG 1 cut(s) 1302
BseNI ACTGG 5 cut(s) 64, 446, 678, 906, 1159
BseRI GAGGAG 1 cut(s) 678
BseXI GCAGC 5 cut(s) 168, 176, 190, 334, 969
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 837
BshFI GGCC 1 cut(s) 1042
BsiHKAI GWGCWC 1 cut(s) 924
BsiSI CCGG 2 cut(s) 1039, 1333
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 259, 646, 673
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 452
BsmI GAATGC 3 cut(s) 307, 427, 1078
BsnI GGCC 1 cut(s) 1042
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 5 cut(s) 9, 41, 145, 202, 550
BspACI CCGC 2 cut(s) 99, 1004
BspANI GGCC 1 cut(s) 1042
BspCNI CTCAG 1 cut(s) 1303
BspFNI CGCG 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 55, 311
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 5 cut(s) 4, 49, 140, 197, 558
BspQI GCTCTTC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 1038
BsrI ACTGG 5 cut(s) 64, 446, 678, 906, 1159
BssAI RCCGGY 1 cut(s) 1038
BssECI CCNNGG 2 cut(s) 829, 1331
BssMI GATC 5 cut(s) 9, 41, 145, 202, 550
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 3 cut(s) 789, 830, 1286
Bst4CI ACNGT 2 cut(s) 1092, 1240
Bst6I CTCTTC 3 cut(s) 141, 501, 863
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 6 cut(s) 109, 314, 417, 1049, 1263, 1311
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 837
BstKTI GATC 5 cut(s) 12, 44, 148, 205, 553
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 5 cut(s) 9, 41, 145, 202, 550
BstMWI GCNNNNNNNGC 2 cut(s) 161, 353
BstNI CCWGG 3 cut(s) 789, 830, 1286
BstSCI CCNGG 4 cut(s) 787, 828, 1284, 1331
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 5 cut(s) 168, 176, 190, 334, 969
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 3 cut(s) 9, 41, 145
BstYI RGATCY 3 cut(s) 9, 41, 145
Bsu36I CCTNAGG 1 cut(s) 314
BsuI GTATCC 2 cut(s) 629, 742
BsuRI GGCC 1 cut(s) 1042
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 3 cut(s) 357, 475, 1128
BtsIMutI CAGTG 8 cut(s) 57, 68, 357, 475, 671, 1067, 1128, 1166
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 684
CaiI CAGNNNCTG 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 1038
Cfr13I GGNCC 3 cut(s) 113, 309, 341
CseI GACGC 1 cut(s) 1276
Csp6I GTAC 4 cut(s) 746, 1224, 1260, 1282
CviAII CATG 5 cut(s) 547, 709, 914, 925, 1214
CviQI GTAC 4 cut(s) 746, 1224, 1260, 1282
DdeI CTNAG 6 cut(s) 109, 314, 417, 1049, 1263, 1311
DpnI GATC 5 cut(s) 11, 43, 147, 204, 552
DpnII GATC 5 cut(s) 9, 41, 145, 202, 550
Eam1104I CTCTTC 3 cut(s) 141, 501, 863
EarI CTCTTC 3 cut(s) 141, 501, 863
Ecl136II GAGCTC 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 924
Eco32I GATATC 1 cut(s) 1303
Eco47I GGWCC 3 cut(s) 113, 309, 341
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 2 cut(s) 92, 482
Eco81I CCTNAGG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 3 cut(s) 787, 828, 1284
EcoRV GATATC 1 cut(s) 1303
EcoT22I ATGCAT 1 cut(s) 1219
EcoT38I GRGCYC 1 cut(s) 924
FaeI CATG 5 cut(s) 550, 712, 917, 928, 1217
FaqI GGGAC 1 cut(s) 452
FatI CATG 5 cut(s) 546, 708, 913, 924, 1213
FauNDI CATATG 2 cut(s) 363, 961
Fnu4HI GCNGC 6 cut(s) 100, 165, 179, 182, 348, 983
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 6 cut(s) 100, 165, 179, 182, 348, 983
GluI GCNGC 6 cut(s) 100, 165, 179, 182, 348, 983
GsaI CCCAGC 1 cut(s) 234
GsuI CTGGAG 2 cut(s) 695, 1307
HaeIII GGCC 1 cut(s) 1042
HapII CCGG 2 cut(s) 1039, 1333
HgaI GACGC 1 cut(s) 1276
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 550, 712, 917, 928, 1217
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 1 cut(s) 871
HpaII CCGG 2 cut(s) 1039, 1333
HphI GGTGA 6 cut(s) 561, 779, 794, 818, 908, 916
Hpy166II GTNNAC 4 cut(s) 746, 785, 886, 899
Hpy188I TCNGA 7 cut(s) 25, 36, 309, 479, 1202, 1300, 1312
Hpy188III TCNNGA 3 cut(s) 13, 149, 1032
Hpy8I GTNNAC 4 cut(s) 746, 785, 886, 899
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 6 cut(s) 67, 1053, 1064, 1121, 1223, 1317
HpyCH4III ACNGT 2 cut(s) 1092, 1240
HpyCH4IV ACGT 2 cut(s) 213, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 353
HpyF3I CTNAG 6 cut(s) 109, 314, 417, 1049, 1263, 1311
HpySE526I ACGT 2 cut(s) 213, 996
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 550, 712, 917, 928, 1217
Kzo9I GATC 5 cut(s) 9, 41, 145, 202, 550
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 53, 536, 691
Lsp1109I GCAGC 5 cut(s) 168, 176, 190, 334, 969
LweI GCATC 3 cut(s) 940, 1015, 1226
MaeII ACGT 2 cut(s) 213, 996
MaeIII GTNAC 1 cut(s) 908
MalI GATC 5 cut(s) 11, 43, 147, 204, 552
MboI GATC 5 cut(s) 9, 41, 145, 202, 550
MboII GAAGA 5 cut(s) 128, 324, 488, 880, 979
MflI RGATCY 3 cut(s) 9, 41, 145
MhlI GDGCHC 1 cut(s) 924
MluCI AATT 8 cut(s) 30, 524, 771, 822, 1116, 1147, 1172, 1252
MlyI GAGTC 1 cut(s) 880
MmeI TCCRAC 3 cut(s) 31, 457, 954
MnlI CCTC 7 cut(s) 126, 145, 164, 699, 754, 1026, 1237
Mph1103I ATGCAT 1 cut(s) 1219
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 5 cut(s) 530, 542, 1146, 1251, 1292
MspA1I CMGCKG 3 cut(s) 181, 287, 982
MspI CCGG 2 cut(s) 1039, 1333
MspR9I CCNGG 4 cut(s) 789, 830, 1286, 1333
Mva1269I GAATGC 3 cut(s) 307, 427, 1078
MvaI CCWGG 3 cut(s) 789, 830, 1286
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 2 cut(s) 161, 353
NciI CCSGG 1 cut(s) 1333
NdeI CATATG 2 cut(s) 363, 961
NdeII GATC 5 cut(s) 9, 41, 145, 202, 550
NlaIII CATG 5 cut(s) 550, 712, 917, 928, 1217
NlaIV GGNNCC 2 cut(s) 55, 311
NsiI ATGCAT 1 cut(s) 1219
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 3 cut(s) 307, 427, 1078
PdmI GAANNNNTTC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 673
PkrI GCNGC 6 cut(s) 101, 166, 180, 183, 349, 984
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
PpuMI RGGWCCY 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 787, 828, 1284
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 3 cut(s) 787, 828, 1284
PspN4I GGNNCC 2 cut(s) 55, 311
PspPI GGNCC 3 cut(s) 113, 309, 341
PspPPI RGGWCCY 1 cut(s) 113
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 3 cut(s) 9, 41, 145
PvuII CAGCTG 3 cut(s) 181, 287, 982
RsaI GTAC 4 cut(s) 747, 1225, 1261, 1283
RsaNI GTAC 4 cut(s) 746, 1224, 1260, 1282
SacI GAGCTC 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 5 cut(s) 530, 542, 1146, 1251, 1292
SatI GCNGC 6 cut(s) 100, 165, 179, 182, 348, 983
Sau3AI GATC 5 cut(s) 9, 41, 145, 202, 550
Sau96I GGNCC 3 cut(s) 113, 309, 341
ScaI AGTACT 1 cut(s) 1261
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 4 cut(s) 789, 830, 1286, 1333
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 3 cut(s) 940, 1015, 1226
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 3 cut(s) 113, 309, 341
SmlI CTYRAG 1 cut(s) 1194
SmoI CTYRAG 1 cut(s) 1194
Sse9I AATT 8 cut(s) 30, 524, 771, 822, 1116, 1147, 1172, 1252
SsiI CCGC 2 cut(s) 99, 1004
SspI AATATT 2 cut(s) 226, 1084
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 787, 828, 1284, 1331
TaaI ACNGT 2 cut(s) 1092, 1240
TaiI ACGT 2 cut(s) 216, 999
TasI AATT 8 cut(s) 30, 524, 771, 822, 1116, 1147, 1172, 1252
TatI WGTACW 2 cut(s) 745, 1259
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 5 cut(s) 530, 542, 1146, 1251, 1292
Tru9I TTAA 5 cut(s) 530, 542, 1146, 1251, 1292
TscAI CASTG 8 cut(s) 64, 75, 357, 475, 678, 1074, 1128, 1166
TseI GCWGC 5 cut(s) 164, 178, 181, 347, 982
TspDTI ATGAA 3 cut(s) 318, 844, 1122
TspGWI ACGGA 1 cut(s) 744
TspRI CASTG 8 cut(s) 64, 75, 357, 475, 678, 1074, 1128, 1166
Van91I CCANNNNNTGG 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 113, 309, 341
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 30
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 1261
Zsp2I ATGCAT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.