Rmu_sc0009012.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009012.1
OG0021628
Physical Location & Seq
Forward (+)
24239 .. 25716
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009012.1_g000008.1.cds

Sequence Viewer

Length: 474 bp
atgagctgcttcctactaccaaagaaggtttgcaatgaagtcaactctgcactgggaaatttctggtggggaaagacccaacatgggaacaatcttcattggaagagttgggattttatggggactcctaaatcggaagggggaatgggattcagggacctgcatcactttaatctagccctccttacgaagcagttctggcgtctaattcaagagccccactccatctgggcacaggttgctcccctgtcaggctatttcaaaataaactgtgatacagcttggaatcctcctacttcagctcaattgggggctataatctggaattcaactggtgatttccacagtggctctgcctcctctaccacttatggatctacagccaaggctgaagcatttgcaatcctccttggagtttctcttgctatatccctcaatctaaggatggttcaggtggaatcagatgcaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

157

Amino Acids

17.39

Weight (kDa)

8.5

Isoelectric Point (pI)

17.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 2 cut(s) 58, 325
AcuI CTGAAG 2 cut(s) 282, 411
AcyI GRCGYC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 84, 251
AgsI TTSAA 3 cut(s) 212, 262, 330
AluBI AGCT 3 cut(s) 6, 281, 302
AluI AGCT 3 cut(s) 6, 281, 302
AlwI GGATC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 58, 325
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 219
BccI CCATC 2 cut(s) 233, 439
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 172, 454
BmuI ACTGGG 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 384, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 251
Bse1I ACTGG 2 cut(s) 57, 337
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 384, 409
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 84, 251
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 57, 337
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 136, 170
BslI CCNNNNNNNGG 2 cut(s) 84, 251
BsmFI GGGAC 2 cut(s) 136, 170
Bsp1286I GDGCHC 2 cut(s) 219, 235
Bsp143I GATC 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 2 cut(s) 57, 337
BssECI CCNNGG 2 cut(s) 384, 409
BssMI GATC 1 cut(s) 374
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 2 cut(s) 384, 409
Bst4CI ACNGT 2 cut(s) 272, 347
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 450
BstKTI GATC 1 cut(s) 377
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 2 cut(s) 199, 239
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 50, 352
BveI ACCTGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 191
CviAII CATG 1 cut(s) 83
DdeI CTNAG 1 cut(s) 440
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 384, 409
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 282, 411
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 384, 409
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 384, 409
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 84, 119, 317, 372, 428
FaqI GGGAC 2 cut(s) 136, 170
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 1 cut(s) 457
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 7
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 4 cut(s) 124, 150, 286, 458
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 136, 463
Hpy188III TCNNGA 2 cut(s) 212, 322
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 19, 131
HpyCH4III ACNGT 2 cut(s) 272, 347
HpyCH4V TGCA 5 cut(s) 33, 50, 163, 401, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 239
HpyF3I CTNAG 1 cut(s) 440
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 247
LweI GCATC 2 cut(s) 172, 454
MaeI CTAG 1 cut(s) 176
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 2 cut(s) 86, 115
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 219, 235
MluCI AATT 4 cut(s) 58, 207, 305, 325
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 6 cut(s) 191, 300, 367, 370, 416, 443
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 199, 239
NdeII GATC 1 cut(s) 374
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 150, 286, 458
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 1 cut(s) 374
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 219, 235
SetI ASST 7 cut(s) 8, 30, 162, 240, 283, 304, 456
SfaNI GCATC 2 cut(s) 172, 454
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 157
Sse9I AATT 4 cut(s) 58, 207, 305, 325
SspMI CTAG 1 cut(s) 176
StyI CCWWGG 2 cut(s) 384, 409
TaaI ACNGT 2 cut(s) 272, 347
TasI AATT 4 cut(s) 58, 207, 305, 325
TfiI GAWTC 3 cut(s) 150, 286, 458
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 57, 352
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 51, 86
TspRI CASTG 2 cut(s) 57, 352
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 2 cut(s) 58, 325
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.