Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010280.1

Orthogroup ID

OG0020542

Physical Location & Seq

Genomic Coordinates Reverse (-)

99228 .. 99636

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010280.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgcaagtcaattcagtagccgaatacctcactctggttcagatcgaaggagttaactgtcaggctgaagctgtgtggtatgctggtaagcgcatggcctttttctacagggctaaggtgatgaaaaatgggagctattaccactgcatttggggaaaggtttccaggcctcatcgtaacagtggtactgttcgtgcaaagttcaagtccagtttgcctcccaaatacttgggtgtaaggatgagggtgtttatgtatcccatgccagcaatatctaagctaggtacttgttctttactttgttcgacatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

104

Amino Acids

11.81

Weight (kDa)

9.89

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0018121
rosa_multiflora	Rmu_sc0010280.1_g000023
rosa_samantha	Rh5BG130000 Rh5CG144000 Rh5DG133800
rosa_wichuraiana	Rw5G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	187, 286
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	71, 135, 280
AluI	AGCT	3 cut(s)	71, 135, 280
AoxI	GGCC	2 cut(s)	96, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	106
BfuI	GTATCC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	98, 169
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	98, 169
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	98, 169
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	59, 182, 190
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	114, 276
BstF5I	GGATG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	98, 169
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 187
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	186, 285
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	3 cut(s)	94, 262, 309
CviJI	RGCY	8 cut(s)	20, 65, 71, 98, 113, 135, 169, 280
CviKI_1	RGCY	8 cut(s)	20, 65, 71, 98, 113, 135, 169, 280
CviQI	GTAC	2 cut(s)	186, 285
DdeI	CTNAG	2 cut(s)	114, 276
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	97, 265, 312
FaiI	YATR	5 cut(s)	81, 95, 254, 263, 310
FatI	CATG	3 cut(s)	93, 261, 308
FokI	GGATG	1 cut(s)	253
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	98, 169
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	97, 265, 312
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	59, 182, 190
HpyCH4V	TGCA	3 cut(s)	4, 147, 197
HpyF3I	CTNAG	2 cut(s)	114, 276
Hsp92II	CATG	3 cut(s)	97, 265, 312
HspAI	GCGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	8 cut(s)	20, 47, 69, 94, 151, 178, 223, 279
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	4 cut(s)	38, 180, 228, 237
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	97, 265, 312
NspI	RCATGY	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	187, 286
RsaNI	GTAC	2 cut(s)	186, 285
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	7 cut(s)	30, 73, 120, 137, 162, 282, 286
SfcI	CTRYAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	3 cut(s)	59, 182, 190
TaqI	TCGA	2 cut(s)	45, 305
TasI	AATT	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	149, 187
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	149, 187
XceI	RCATGY	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.