Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0020542

Physical Location & Seq

Genomic Coordinates Reverse (-)

13192731 .. 13193362

Gene Structure 632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCAAGTCAATTCAGTAGCCGAATACCTCACTCTGGTTCAGATCGAAGGAGTTAACTGTCAGGCTGAAGCTGTGTGGTATGCTGGTAAGCGCATGGCCTTTTTCTACAGGGCTAAGGTGATGAAAAATGGGAGCTATTACCACTGCATTTGGGGAAAGGTTTCCAGGCCTCATCGTAACAGTGGTACTGTTCGTGCAAAGTTCAAGTCCAGTTTGCCTCCCAAATACTTGCTTCCGATTGATGAGAAAGTGAGAAACACTTGGGGAAGTAGGAAAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

94

Amino Acids

10.89

Weight (kDa)

10.07

Isoelectric Point (pI)

26.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	8 - 76	1.9e-22	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0018121
rosa_multiflora	Rmu_sc0010280.1_g000023
rosa_samantha	Rh5BG130000 Rh5CG144000 Rh5DG133800
rosa_wichuraiana	Rw5G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	71, 135
AluI	AGCT	2 cut(s)	71, 135
AoxI	GGCC	2 cut(s)	96, 167
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	98, 169
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	98, 169
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	98, 169
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	59, 182, 190
BstDEI	CTNAG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	98, 169
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 187
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	186
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	7 cut(s)	20, 65, 71, 98, 113, 135, 169
CviKI_1	RGCY	7 cut(s)	20, 65, 71, 98, 113, 135, 169
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	97
FaiI	YATR	3 cut(s)	81, 95, 281
FatI	CATG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	98, 169
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	42, 237
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	59, 182, 190
HpyCH4V	TGCA	3 cut(s)	4, 147, 197
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	20, 47, 69, 94, 151, 178, 223
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MluCI	AATT	2 cut(s)	10, 276
MnlI	CCTC	3 cut(s)	38, 180, 228
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	5 cut(s)	30, 73, 120, 137, 162
SfcI	CTRYAG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	10, 276
SseBI	AGGCCT	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	3 cut(s)	59, 182, 190
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	10, 276
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	149, 187
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	149, 187
XmnI	GAANNNNTTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.