Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020542

Physical Location & Seq

Genomic Coordinates Reverse (-)

13371362 .. 13371892

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGAGGAGTCAACAACAAGTATACAAGAGTGAGACTCTAGATGCCAGGGGAACCATCCTTGCCGAATACCTCACTCTGGTTCAGATCGAAGGAGTTAACTGTCAGGCTGAAGCTGTGTGGTATGCTGGTAAGCGCATGGCCTTTTTCTACAGGGCTAAGGTGATGAAAAATGGGAGCTATTACCACTGCATTTGGGGAAAGGTTTCCAGGCCTCATCGTAACAGTGGTACTGTTCGTGCAAAGTTCAAGTCCAGTTTGCCTCCCAAATACTTGTTTAAACTCAAAATAATGTTGAGTATATGTATAATGATTTTCGGTGTAAGGATGATGGTGTTTATGTATCCCATGCCAGCAATATCTAAGCTAGGTACTTGTTCTTTACTTTGTTCGACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

9.83

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	24 - 92	5.8e-22	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0018121
rosa_multiflora	Rmu_sc0010280.1_g000023
rosa_samantha	Rh5BG130000 Rh5CG144000 Rh5DG133800
rosa_wichuraiana	Rw5G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	232, 373
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	47, 209
AluBI	AGCT	3 cut(s)	116, 180, 367
AluI	AGCT	3 cut(s)	116, 180, 367
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	141, 212
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	175
BccI	CCATC	2 cut(s)	65, 325
BciT130I	CCWGG	2 cut(s)	49, 211
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	41, 368
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	49, 211
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	49, 211
BmsI	GCATC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	49, 211
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	57, 333
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	143, 214
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	143, 214
Bsp143I	GATC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	143, 214
BspLI	GGNNCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	87
BssNAI	GTATAC	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	49, 211
Bst4CI	ACNGT	3 cut(s)	104, 227, 235
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	159, 363
BstF5I	GGATG	2 cut(s)	57, 333
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	87
BstNI	CCWGG	2 cut(s)	49, 211
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	47, 209
BstSFI	CTRYAG	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	143, 214
BtsCI	GGATG	2 cut(s)	57, 333
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 232
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	231, 372
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	3 cut(s)	139, 349, 396
CviJI	RGCY	7 cut(s)	110, 116, 143, 158, 180, 214, 367
CviKI_1	RGCY	7 cut(s)	110, 116, 143, 158, 180, 214, 367
CviQI	GTAC	2 cut(s)	231, 372
DdeI	CTNAG	2 cut(s)	159, 363
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraI	TTTAAA	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	47, 209
FaeI	CATG	3 cut(s)	142, 352, 399
FaiI	YATR	9 cut(s)	25, 126, 140, 302, 304, 308, 341, 350, 397
FatI	CATG	3 cut(s)	138, 348, 395
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	2 cut(s)	44, 340
FspBI	CTAG	2 cut(s)	41, 368
GlaI	GCGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	143, 214
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	142, 352, 399
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	2 cut(s)	14, 100
HindII	GTYRAC	2 cut(s)	14, 100
HinfI	GANTC	2 cut(s)	10, 37
HpaI	GTTAAC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	14, 25, 100
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	3 cut(s)	14, 25, 100
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	104, 227, 235
HpyCH4V	TGCA	2 cut(s)	192, 242
HpyF3I	CTNAG	2 cut(s)	159, 363
Hsp92II	CATG	3 cut(s)	142, 352, 399
HspAI	GCGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	177
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	41, 368
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	19, 31
MnlI	CCTC	3 cut(s)	83, 225, 273
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	99, 279
MspR9I	CCNGG	2 cut(s)	49, 211
MssI	GTTTAAAC	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	49, 211
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	142, 352, 399
NlaIV	GGNNCC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	214
PciI	ACATGT	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	18, 31
PmeI	GTTTAAAC	1 cut(s)	280
PpsI	GAGTC	2 cut(s)	18, 31
PscI	ACATGT	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	47, 209
PspGI	CCWGG	2 cut(s)	47, 209
PspN4I	GGNNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	232, 373
RsaNI	GTAC	2 cut(s)	231, 372
SaqAI	TTAA	2 cut(s)	99, 279
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	19, 31
ScrFI	CCNGG	2 cut(s)	49, 211
SetI	ASST	7 cut(s)	75, 118, 165, 182, 207, 369, 373
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	41, 368
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	47, 209
TaaI	ACNGT	3 cut(s)	104, 227, 235
TaqI	TCGA	2 cut(s)	90, 392
Tru1I	TTAA	2 cut(s)	99, 279
Tru9I	TTAA	2 cut(s)	99, 279
TscAI	CASTG	2 cut(s)	194, 232
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	194, 232
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	41, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.