Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020542

Physical Location & Seq

Genomic Coordinates Forward (+)

12789274 .. 12789663

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG130000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTGAGGAGTCAACACCAAGTGTACAAGAGGTCCAAGTCGAATCACACTCTATGTCAGAGGAACCATCCTTGGATACAAGAGAGAGTACACGAGGCTCTATGCCAGGGGAACCATGCATCCTTGGTTACAAGAGATGCAAGTCAATTCAGTAGCCGAATACCTAACTCTGGTTCAGATCGAATACCTAACTCTGGTTCAGTAGCAGAAGCTGTGTGGCACGCTGGGAAGCATATGGCCTTTGTCTACAGGGCTAAGGTGATGAAAAGTGGGAGCTATTACAGCTGCATTTTGGGAAAGGTTTCTAGGCCTCATCGTAACAGACTAACAGTGGCATTGTTTTTGCTAAGTTCAAGTCCAATTTGCTTCCCAATCCTTAGTATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

10.35

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0018121
rosa_multiflora	Rmu_sc0010280.1_g000023
rosa_samantha	Rh5BG130000 Rh5CG144000 Rh5DG133800
rosa_wichuraiana	Rw5G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	26, 90
AfiI	CCNNNNNNNGG	2 cut(s)	170, 194
AgsI	TTSAA	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	212, 276, 285
AluI	AGCT	3 cut(s)	212, 276, 285
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	237, 308
ApeKI	GCWGC	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	65, 113
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	127, 128
Bpu10I	CCTNAGC	2 cut(s)	5, 255
BsaJI	CCNNGG	3 cut(s)	71, 106, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 194
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	71, 106, 123
BseGI	GGATG	2 cut(s)	67, 119
BseLI	CCNNNNNNNGG	2 cut(s)	170, 194
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	239, 310
BslI	CCNNNNNNNGG	2 cut(s)	170, 194
BsnI	GGCC	2 cut(s)	239, 310
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	239, 310
BspLI	GGNNCC	2 cut(s)	65, 113
BsrGI	TGTACA	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	71, 106, 123
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	71, 123
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	4 cut(s)	5, 255, 347, 377
BstF5I	GGATG	2 cut(s)	67, 119
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	239, 310
BtsCI	GGATG	2 cut(s)	67, 119
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	25, 89
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	8 cut(s)	98, 156, 212, 239, 254, 276, 285, 310
CviKI_1	RGCY	8 cut(s)	98, 156, 212, 239, 254, 276, 285, 310
CviQI	GTAC	2 cut(s)	25, 89
DdeI	CTNAG	4 cut(s)	5, 255, 347, 377
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	71, 123
Eco147I	AGGCCT	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	71, 123
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	71, 123
FaeI	CATG	1 cut(s)	119
FaiI	YATR	5 cut(s)	55, 103, 117, 234, 236
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	2 cut(s)	54, 106
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	286
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	239, 310
Hin1II	CATG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HinfI	GANTC	2 cut(s)	10, 43
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	4 cut(s)	14, 25, 91, 247
Hpy188I	TCNGA	2 cut(s)	60, 178
Hpy8I	GTNNAC	4 cut(s)	14, 25, 91, 247
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	119, 140, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	4 cut(s)	5, 255, 347, 377
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	6 cut(s)	92, 119, 156, 180, 210, 235
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	127, 128
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	127, 317
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MluCI	AATT	2 cut(s)	146, 360
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	24, 54, 88, 321
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	65, 113
NsiI	ATGCAT	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	65, 113
PspPI	GGNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	285
RsaI	GTAC	2 cut(s)	26, 90
RsaNI	GTAC	2 cut(s)	25, 89
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	8 cut(s)	35, 166, 190, 214, 261, 278, 287, 303
SfaNI	GCATC	2 cut(s)	127, 128
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	146, 360
SseBI	AGGCCT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	71, 123
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	41, 181
TasI	AATT	2 cut(s)	146, 360
TatI	WGTACW	2 cut(s)	24, 88
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.