Rmu_sc0011092.1_g000001

pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011092.1
Physical Location & Seq
Reverse (-)
2 .. 1830
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011092.1_g000001.1.cds

Sequence Viewer

Length: 1829 bp
atgaagtcccgcttccactctctgttctctgcgcagactcacagaccccaagtcctccactcacttcatcagcgaccaatctcatcaccctcagccaataaacccaaatggaactccaagaccaacgtcataatcaccaacccaactctgctcatcatggagtcttgcaccaccatgctccagttgaagcaaattcaagcccaaatgacctgcactggcctcattcaccacacctttcccgtcagcagagtcctagccttctgtgctatcgccgacggcggcgacattcactacgctaatcttattttcacgcgcattgcaaaacccaatacttatatgtggaacacaatgatcagaggctactccaaagctcaagttaacacaactggattctcatttttctgccgaatggtccgcgaacgtgtcgaaatggactgccggagttttgtctttgcgcttaaggcatgtgggttgctgggcgattcggtacattgcgtgatttggaagatgggttttgggtctgactcgctggtgcgaaatgggttggtgcattattatgctgaaggcgggtccgtgagtcatgcacggaaggtgttcgatgaaagtcctgtgagggatgttgtaacttggaccaccatgattgatgggtatgcggggtgtggttattcgaatgaggctgtggagttgtttgatgagatgttgttcagtgatgttgagccaaatgaggttactatgattgcagtgctttcggcgtgctcgaataagggggatattggtatggggaagagtattcacgagtatgtgcgaaagaaggatgtgaactgtagcttgaatttgcttaatgctttgttggatatgtatgtgaaatgtggttgtttgactgcggcgaaagaggtttttgatgacatgaaagtgagggatgtgtttacatggactagcatggttaatggatatgctaaatgcggcgagttagacgctgcaagacagttttttaatgacatgcctgatagaaatgtagtatcttggaatgcaatgattgctggttatgctcagaacaatcaacctactgaagcggtgaagttgtttcatgacatggtggagtcgggttttgctccgatagagaacagtttagtatgtgtgctctctgcttgtggtcagttaagttgcctggatttgggtcggtggattcaccagtattatgtccatggaaatcatattcaacttggtgtgattttggggaatgcgttgatagacatgtatgccaagtgtgggagtttaacttctgctacagaacttttcaatgaaatgccagagaaaaacttggtttcttggaatacgatgattgctggatacgctgctcatggccatgctaagcaagctcttactctattcaaccaaatgaaaagtacggatacgaagcctgaccatatcacatttgtggcagtcttgtctgcttgcagccatggcggattagtttctgaaggcagagagcatttcaaaagcatgattagggattacggaatagagcccaaagaggaaaattatgcttgcatgatagatttacttggaagaattggattgctggaagaagcatatgagttgataaacaaaatgccaatggaaccgagtgcgtctgcatggggcgcccttctaaattcatgtaaaattcatgggaatgttgagctagctaagctttctgctgagaaactattagacttggacccagaagatagcggaatttatgtgtcgctggcaaacttatgcgctatcaagcaaagatgggtggatgtaagaaatgtcagaagcctgatgaaagagaggggagtgca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

609

Amino Acids

67.83

Weight (kDa)

6.49

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 1643
AccII CGCG 2 cut(s) 313, 417
AcoI YGGCCR 1 cut(s) 1363
AcsI RAATTY 5 cut(s) 192, 832, 1654, 1665, 1737
AcuI CTGAAG 3 cut(s) 582, 1089, 1500
AcyI GRCGYC 1 cut(s) 1644
AfaI GTAC 2 cut(s) 489, 1408
AfiI CCNNNNNNNGG 2 cut(s) 1174, 1269
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 2 cut(s) 421, 1254
AgsI TTSAA 7 cut(s) 187, 197, 832, 1220, 1300, 1393, 1498
AhdI GACNNNNNGTC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 1167
AleI CACNNNNGTG 1 cut(s) 1436
AluBI AGCT 6 cut(s) 371, 828, 1379, 1684, 1688, 1693
AluI AGCT 6 cut(s) 371, 828, 1379, 1684, 1688, 1693
Alw21I GWGCWC 2 cut(s) 758, 1143
AoxI GGCC 2 cut(s) 217, 1363
ApeKI GCWGC 3 cut(s) 977, 1355, 1458
ApoI RAATTY 5 cut(s) 192, 832, 1654, 1665, 1737
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 5 cut(s) 34, 315, 457, 1646, 1766
AspS9I GGNCC 4 cut(s) 412, 570, 630, 1720
AsuHPI GGTGA 5 cut(s) 78, 127, 218, 1087, 1181
AsuII TTCGAA 1 cut(s) 668
AsuNHI GCTAGC 1 cut(s) 1684
AvaII GGWCC 4 cut(s) 412, 570, 630, 1720
BalI TGGCCA 1 cut(s) 1365
BanI GGYRCC 1 cut(s) 1643
BanII GRGCYC 1 cut(s) 1530
BauI CACGAG 1 cut(s) 794
Bbv12I GWGCWC 2 cut(s) 758, 1143
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 964, 1342, 1470
BccI CCATC 3 cut(s) 502, 638, 1773
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciT130I CCWGG 1 cut(s) 1169
BciVI GTATCC 2 cut(s) 1343, 1405
BclI TGATCA 1 cut(s) 351
BfaI CTAG 3 cut(s) 254, 936, 1685
BfmI CTRYAG 2 cut(s) 823, 1287
BfoI RGCGCY 1 cut(s) 1647
BfrI CTTAAG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 218
BfuI GTATCC 2 cut(s) 1343, 1405
BisI GCNGC 6 cut(s) 280, 885, 964, 978, 1356, 1459
BlpI GCTNAGC 2 cut(s) 1371, 1689
BlsI GCNGC 6 cut(s) 281, 886, 965, 979, 1357, 1460
Bme1390I CCNGG 1 cut(s) 1169
Bme18I GGWCC 4 cut(s) 412, 570, 630, 1720
BmeRI GACNNNNNGTC 1 cut(s) 50
BmgT120I GGNCC 4 cut(s) 412, 570, 630, 1720
BmiI GGNNCC 4 cut(s) 571, 1623, 1645, 1722
BmrFI CCNGG 1 cut(s) 1169
BmtI GCTAGC 1 cut(s) 1688
BoxI GACNNNNGTC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 91
Bpu1102I GCTNAGC 2 cut(s) 1371, 1689
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 1644
BsaJI CCNNGG 2 cut(s) 1204, 1462
Bsc4I CCNNNNNNNGG 2 cut(s) 1174, 1269
Bse1I ACTGG 4 cut(s) 181, 220, 391, 1192
Bse3DI GCAATG 3 cut(s) 315, 490, 1038
BseBI CCWGG 1 cut(s) 1169
BseDI CCNNGG 2 cut(s) 1204, 1462
BseGI GGATG 4 cut(s) 622, 820, 925, 1792
BseLI CCNNNNNNNGG 2 cut(s) 1174, 1269
BseMI GCAATG 3 cut(s) 315, 490, 1038
BseMII CTCAG 3 cut(s) 105, 1064, 1692
BseNI ACTGG 4 cut(s) 181, 220, 391, 1192
BseXI GCAGC 3 cut(s) 964, 1342, 1470
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 2 cut(s) 313, 417
BshFI GGCC 2 cut(s) 219, 1365
BshNI GGYRCC 1 cut(s) 1643
BsiHKAI GWGCWC 2 cut(s) 758, 1143
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 1174, 1269
BsmI GAATGC 2 cut(s) 1033, 1246
BsnI GGCC 2 cut(s) 219, 1365
Bsp119I TTCGAA 1 cut(s) 668
Bsp1286I GDGCHC 3 cut(s) 758, 1143, 1530
Bsp143I GATC 1 cut(s) 351
Bsp1720I GCTNAGC 2 cut(s) 1371, 1689
Bsp19I CCATGG 2 cut(s) 1204, 1462
BspANI GGCC 2 cut(s) 219, 1365
BspCNI CTCAG 3 cut(s) 104, 1063, 1693
BspFNI CGCG 2 cut(s) 313, 417
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 4 cut(s) 571, 1623, 1645, 1722
BspMI ACCTGC 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 1688
BspT104I TTCGAA 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 1643
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 3 cut(s) 315, 490, 1038
BsrI ACTGG 4 cut(s) 181, 220, 391, 1192
BssECI CCNNGG 2 cut(s) 1204, 1462
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 1644
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 2 cut(s) 1204, 1462
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 1 cut(s) 1169
Bst4CI ACNGT 3 cut(s) 824, 987, 1127
Bst6I CTCTTC 1 cut(s) 779
BstACI GRCGYC 1 cut(s) 1644
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 6 cut(s) 754, 1377, 1456, 1549, 1686, 1752
BstDEI CTNAG 5 cut(s) 91, 1050, 1371, 1689, 1701
BstDSI CCRYGG 2 cut(s) 1204, 1462
BstF5I GGATG 4 cut(s) 622, 820, 925, 1792
BstFNI CGCG 2 cut(s) 313, 417
BstH2I RGCGCY 1 cut(s) 1647
BstHHI GCGC 5 cut(s) 34, 315, 457, 1646, 1766
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 9 cut(s) 263, 461, 1037, 1046, 1352, 1376, 1464, 1643, 1690
BstNI CCWGG 1 cut(s) 1169
BstNSI RCATGY 3 cut(s) 468, 1003, 1258
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 1167
BstSFI CTRYAG 2 cut(s) 823, 1287
BstUI CGCG 2 cut(s) 313, 417
BstV1I GCAGC 3 cut(s) 964, 1342, 1470
BsuI GTATCC 2 cut(s) 1343, 1405
BsuRI GGCC 2 cut(s) 219, 1365
BtgI CCRYGG 2 cut(s) 1204, 1462
BtsCI GGATG 4 cut(s) 622, 820, 925, 1792
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 3 cut(s) 213, 712, 747
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 6 cut(s) 754, 1377, 1456, 1549, 1686, 1752
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 5 cut(s) 34, 315, 457, 1646, 1766
Cfr13I GGNCC 4 cut(s) 412, 570, 630, 1720
CseI GACGC 2 cut(s) 983, 1620
Csp6I GTAC 2 cut(s) 488, 1407
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviQI GTAC 2 cut(s) 488, 1407
DdeI CTNAG 5 cut(s) 91, 1050, 1371, 1689, 1701
DinI GGCGCC 1 cut(s) 1645
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DriI GACNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 1363
Eam1104I CTCTTC 1 cut(s) 779
Eam1105I GACNNNNNGTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 779
EciI GGCGGA 1 cut(s) 1482
Eco130I CCWWGG 2 cut(s) 1204, 1462
Eco24I GRGCYC 1 cut(s) 1530
Eco47I GGWCC 4 cut(s) 412, 570, 630, 1720
Eco57I CTGAAG 3 cut(s) 582, 1089, 1500
EcoRII CCWGG 1 cut(s) 1167
EcoT14I CCWWGG 2 cut(s) 1204, 1462
EcoT38I GRGCYC 1 cut(s) 1530
EgeI GGCGCC 1 cut(s) 1645
EheI GGCGCC 1 cut(s) 1645
ErhI CCWWGG 2 cut(s) 1204, 1462
FalI AAGNNNNNCTT 1 cut(s) 28
FauI CCCGC 3 cut(s) 17, 560, 646
FauNDI CATATG 1 cut(s) 1594
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 6 cut(s) 280, 885, 964, 978, 1356, 1459
FokI GGATG 4 cut(s) 629, 827, 932, 1799
FriOI GRGCYC 1 cut(s) 1530
Fsp4HI GCNGC 6 cut(s) 280, 885, 964, 978, 1356, 1459
FspBI CTAG 3 cut(s) 254, 936, 1685
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 5 cut(s) 33, 314, 456, 1645, 1765
GluI GCNGC 6 cut(s) 280, 885, 964, 978, 1356, 1459
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 1647
HaeIII GGCC 2 cut(s) 219, 1365
HapII CCGG 1 cut(s) 439
HgaI GACGC 2 cut(s) 983, 1620
HhaI GCGC 5 cut(s) 34, 315, 457, 1646, 1766
Hin1I GRCGYC 1 cut(s) 1644
Hin6I GCGC 5 cut(s) 32, 313, 455, 1644, 1764
HinP1I GCGC 5 cut(s) 32, 313, 455, 1644, 1764
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 1691
HinfI GANTC 9 cut(s) 37, 161, 249, 390, 482, 524, 577, 1100, 1186
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 1 cut(s) 439
HphI GGTGA 5 cut(s) 78, 127, 218, 1087, 1181
Hpy166II GTNNAC 3 cut(s) 379, 820, 927
Hpy188I TCNGA 6 cut(s) 356, 523, 1053, 1116, 1480, 1802
Hpy188III TCNNGA 2 cut(s) 794, 1088
Hpy8I GTNNAC 3 cut(s) 379, 820, 927
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 6 cut(s) 268, 557, 583, 805, 1475, 1658
HpyCH4III ACNGT 3 cut(s) 824, 987, 1127
HpyCH4IV ACGT 2 cut(s) 126, 421
HpyF10VI GCNNNNNNNGC 9 cut(s) 263, 461, 1037, 1046, 1352, 1376, 1464, 1643, 1690
HpyF3I CTNAG 5 cut(s) 91, 1050, 1371, 1689, 1701
HpySE526I ACGT 2 cut(s) 126, 421
Hsp92I GRCGYC 1 cut(s) 1644
HspAI GCGC 5 cut(s) 32, 313, 455, 1644, 1764
KasI GGCGCC 1 cut(s) 1643
Ksp22I TGATCA 1 cut(s) 351
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 183, 1117
Lsp1109I GCAGC 3 cut(s) 964, 1342, 1470
MaeI CTAG 3 cut(s) 254, 936, 1685
MaeII ACGT 2 cut(s) 126, 421
MaeIII GTNAC 2 cut(s) 622, 727
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 5 cut(s) 517, 796, 1581, 1598, 1739
MhlI GDGCHC 3 cut(s) 758, 1143, 1530
MlsI TGGCCA 1 cut(s) 1365
MluCI AATT 7 cut(s) 192, 832, 1540, 1572, 1654, 1665, 1737
MluNI TGGCCA 1 cut(s) 1365
Mly113I GGCGCC 1 cut(s) 1644
MlyI GAGTC 6 cut(s) 31, 170, 258, 518, 586, 1109
MmeI TCCRAC 1 cut(s) 831
Mox20I TGGCCA 1 cut(s) 1365
MroXI GAANNNNTTC 1 cut(s) 593
MscI TGGCCA 1 cut(s) 1365
MseI TTAA 7 cut(s) 378, 459, 840, 945, 993, 1160, 1277
MslI CAYNNNNRTG 7 cut(s) 173, 555, 798, 911, 1365, 1436, 1674
Msp20I TGGCCA 1 cut(s) 1365
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 1169
Mva1269I GAATGC 2 cut(s) 1033, 1246
MvaI CCWGG 1 cut(s) 1169
MvnI CGCG 2 cut(s) 313, 417
MwoI GCNNNNNNNGC 9 cut(s) 263, 461, 1037, 1046, 1352, 1376, 1464, 1643, 1690
NarI GGCGCC 1 cut(s) 1644
NcoI CCATGG 2 cut(s) 1204, 1462
NdeI CATATG 1 cut(s) 1594
NdeII GATC 1 cut(s) 351
NheI GCTAGC 1 cut(s) 1684
NlaIV GGNNCC 4 cut(s) 571, 1623, 1645, 1722
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 3 cut(s) 468, 1003, 1258
NspV TTCGAA 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 1436
PagI TCATGA 1 cut(s) 1087
PciI ACATGT 1 cut(s) 1254
PcsI WCGNNNNNNNCGW 1 cut(s) 755
PctI GAATGC 2 cut(s) 1033, 1246
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 390, 482, 1186
PkrI GCNGC 6 cut(s) 281, 886, 965, 979, 1357, 1460
PleI GAGTC 6 cut(s) 31, 169, 257, 518, 585, 1108
PluTI GGCGCC 1 cut(s) 1647
PpsI GAGTC 6 cut(s) 31, 169, 257, 518, 585, 1108
PscI ACATGT 1 cut(s) 1254
PshAI GACNNNNGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 1167
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 1 cut(s) 1167
PspN4I GGNNCC 4 cut(s) 571, 1623, 1645, 1722
PspPI GGNCC 4 cut(s) 412, 570, 630, 1720
RsaI GTAC 2 cut(s) 489, 1408
RsaNI GTAC 2 cut(s) 488, 1407
RseI CAYNNNNRTG 7 cut(s) 173, 555, 798, 911, 1365, 1436, 1674
SaqAI TTAA 7 cut(s) 378, 459, 840, 945, 993, 1160, 1277
SatI GCNGC 6 cut(s) 280, 885, 964, 978, 1356, 1459
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 4 cut(s) 412, 570, 630, 1720
SchI GAGTC 6 cut(s) 31, 170, 258, 518, 586, 1109
ScrFI CCNGG 1 cut(s) 1169
SduI GDGCHC 3 cut(s) 758, 1143, 1530
SfcI CTRYAG 2 cut(s) 823, 1287
SfoI GGCGCC 1 cut(s) 1645
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 4 cut(s) 412, 570, 630, 1720
SmiMI CAYNNNNRTG 7 cut(s) 173, 555, 798, 911, 1365, 1436, 1674
SmlI CTYRAG 2 cut(s) 372, 458
SmoI CTYRAG 2 cut(s) 372, 458
Sse9I AATT 7 cut(s) 192, 832, 1540, 1572, 1654, 1665, 1737
SspDI GGCGCC 1 cut(s) 1643
SspMI CTAG 3 cut(s) 254, 936, 1685
StyD4I CCNGG 1 cut(s) 1167
StyI CCWWGG 2 cut(s) 1204, 1462
TaaI ACNGT 3 cut(s) 824, 987, 1127
TaiI ACGT 2 cut(s) 129, 424
TaqI TCGA 4 cut(s) 426, 597, 668, 758
TasI AATT 7 cut(s) 192, 832, 1540, 1572, 1654, 1665, 1737
TauI GCSGC 3 cut(s) 282, 887, 966
TfiI GAWTC 3 cut(s) 390, 482, 1186
Tru1I TTAA 7 cut(s) 378, 459, 840, 945, 993, 1160, 1277
Tru9I TTAA 7 cut(s) 378, 459, 840, 945, 993, 1160, 1277
TscAI CASTG 3 cut(s) 220, 712, 747
TseI GCWGC 3 cut(s) 977, 1355, 1458
TspGWI ACGGA 4 cut(s) 562, 601, 1424, 1533
TspRI CASTG 3 cut(s) 220, 712, 747
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 4 cut(s) 412, 570, 630, 1720
XapI RAATTY 5 cut(s) 192, 832, 1654, 1665, 1737
XceI RCATGY 3 cut(s) 468, 1003, 1258
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 3 cut(s) 254, 936, 1685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.