Rmu_sc0011217.1_g000001

Glutathione S-transferase omega-like 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011217.1
OG0016564
Physical Location & Seq
Reverse (-)
2 .. 1149
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011217.1_g000001.1.cds

Sequence Viewer

Length: 1064 bp
atgaactgcacttccacttcgctgctgagctcctccttcctcccaactccaccattgaatcccaacagctcctcctcctcctcctccttcccacgggccccacccaagcccctcatccgccgcgtcaccactaaaatgtccctcaaccaacaacccccccaaccgccggacccaacctccctgctcacctccgtcaccaagctcctctggggcccctccctccctcccggcctcctcatctccaccgtccgcgcagcttggaacaccacgtggcgcctgatgatgtcccagctcgccccctccgatccctccctcgcctacacccgacccccttcaaggtttcgagccacacaaatcccccgccaaaaccagacctccctccacctctacgtcggcctcccctgcccctgggcccaccgcaccctcatcgtccgagccctcaagggcctcgacggcgccgtacccgtctcaatcgccgctccgggcacggacggctcctgggaattcaagactactcgcgacccgggtccggataccctcgacccgacccgggacaaagcaaacgggtgcaggactctgaaagaggtctacaaatctagagccggaggatacgacggtcggtccacagtgccaatgctatgggacgcaaagaacaaacaagtactatgcaacgaaagctacgatataatcgaattgttcaattcgggtctgaatgaactggcccgtaacccgggtttggatctttcaccgccttcattgaagccaaagattcaagaatggaacagcataatctaccccaatgtcaataatggagtctataggtgtggatttgctcagtctcaacaagcatatgatgtagcagtgaatgacttgttcaaaacactggacaagttggaagatcatttgagccgatttcgctacctgtgcggagatgaactgacgcttgccgatgtttgcctcttcaccactctcatccggttcgatctcgcctacaatgtcttgttcaaatgcaccaggaggaagctggtcgagtatccaaacctccatgcttacatgcgtgacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_C_2 GST_N_2

Protein Analysis

354

Amino Acids

39.51

Weight (kDa)

9.3

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016564)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44000
fragaria_vesca FvH4_2g20660
prunus_persica Prupe.8G216400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0286841
rosa_laevigata RLG00000012532
rosa_multiflora Rmu_sc0011217.1_g000001 Rmu_sc0018293.1_g000001
rosa_roxburghii Rroxscaffold_7G00181880
rosa_rugosa Rorug06G0183900
rosa_samantha Rh6AG296000 Rh6BG300300 Rh6CG308200 Rh6DG292000
rosa_wichuraiana Rw6G025520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 273, 455
AccBSI CCGCTC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 588
AccII CGCG 3 cut(s) 123, 252, 519
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 9 cut(s) 118, 121, 164, 250, 361, 418, 477, 749, 927
AclWI GGATC 2 cut(s) 299, 747
AcsI RAATTY 1 cut(s) 503
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 274, 456
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 462, 663
AfiI CCNNNNNNNGG 8 cut(s) 93, 166, 336, 408, 529, 550, 730, 736
AgsI TTSAA 8 cut(s) 58, 336, 508, 700, 760, 773, 877, 1006
AhdI GACNNNNNGTC 1 cut(s) 619
AjnI CCWGG 3 cut(s) 407, 497, 1013
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 30, 69, 202, 257, 292, 678, 1024
AluI AGCT 7 cut(s) 30, 69, 202, 257, 292, 678, 1024
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 472, 843
AlwI GGATC 2 cut(s) 299, 747
Ama87I CYCGRG 3 cut(s) 523, 549, 730
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 7 cut(s) 96, 211, 229, 394, 411, 445, 720
ApaI GGGCCC 3 cut(s) 100, 215, 415
ApeKI GCWGC 2 cut(s) 22, 254
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 3 cut(s) 254, 276, 458
AsuC2I CCSGG 8 cut(s) 228, 483, 524, 525, 550, 551, 731, 732
AsuHPI GGTGA 5 cut(s) 118, 178, 187, 738, 955
AvaI CYCGRG 3 cut(s) 523, 549, 730
AvaII GGWCC 3 cut(s) 169, 527, 621
BaeGI GKGCMC 4 cut(s) 100, 215, 415, 488
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BanI GGYRCC 2 cut(s) 273, 455
BanII GRGCYC 5 cut(s) 32, 100, 215, 415, 439
BbrPI CACGTG 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 9, 266
BceAI ACGGC 3 cut(s) 443, 469, 508
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 3 cut(s) 409, 499, 1015
BciVI GTATCC 3 cut(s) 526, 602, 1044
BcnI CCSGG 8 cut(s) 228, 483, 524, 525, 550, 551, 731, 732
BcoDI GTCTC 2 cut(s) 472, 843
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 817
BfoI RGCGCY 2 cut(s) 277, 459
BfuI GTATCC 3 cut(s) 526, 602, 1044
BglI GCCNNNNNGGC 1 cut(s) 453
BisI GCNGC 4 cut(s) 23, 121, 255, 477
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 4 cut(s) 24, 122, 256, 478
BmcAI AGTACT 1 cut(s) 663
Bme18I GGWCC 3 cut(s) 169, 527, 621
BmeRI GACNNNNNGTC 1 cut(s) 619
BmeT110I CYCGRG 3 cut(s) 523, 549, 730
BoxI GACNNNNGTC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 8 cut(s) 228, 483, 524, 525, 550, 551, 731, 732
BsaAI YACGTR 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 274, 456
BsaJI CCNNGG 7 cut(s) 92, 407, 408, 498, 523, 549, 730
BsaWI WCCGGW 2 cut(s) 529, 975
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 161, 191, 359, 389
Bsc4I CCNNNNNNNGG 8 cut(s) 93, 166, 336, 408, 529, 550, 730, 736
Bse1I ACTGG 2 cut(s) 723, 888
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 3 cut(s) 409, 499, 1015
BseDI CCNNGG 7 cut(s) 92, 407, 408, 498, 523, 549, 730
BseGI GGATG 2 cut(s) 114, 972
BseLI CCNNNNNNNGG 8 cut(s) 93, 166, 336, 408, 529, 550, 730, 736
BseMII CTCAG 2 cut(s) 17, 848
BseNI ACTGG 2 cut(s) 723, 888
BseRI GAGGAG 8 cut(s) 22, 61, 64, 67, 70, 73, 194, 224
BseSI GKGCMC 4 cut(s) 100, 215, 415, 488
BseXI GCAGC 2 cut(s) 9, 266
BseYI CCCAGC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 589
Bsh1236I CGCG 3 cut(s) 123, 252, 519
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 7 cut(s) 98, 213, 231, 396, 413, 447, 722
BshNI GGYRCC 2 cut(s) 273, 455
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 3 cut(s) 523, 549, 730
BsiSI CCGG 9 cut(s) 167, 228, 482, 524, 530, 550, 603, 731, 976
BslFI GGGAC 4 cut(s) 124, 271, 566, 656
BslI CCNNNNNNNGG 8 cut(s) 93, 166, 336, 408, 529, 550, 730, 736
BsmAI GTCTC 2 cut(s) 472, 843
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 4 cut(s) 124, 271, 566, 656
BsnI GGCC 7 cut(s) 98, 213, 231, 396, 413, 447, 722
BsoBI CYCGRG 3 cut(s) 523, 549, 730
Bsp120I GGGCCC 3 cut(s) 96, 211, 411
Bsp1286I GDGCHC 6 cut(s) 32, 100, 215, 415, 439, 488
Bsp13I TCCGGA 1 cut(s) 529
Bsp143I GATC 4 cut(s) 304, 739, 898, 982
Bsp1720I GCTNAGC 1 cut(s) 26
Bsp68I TCGCGA 1 cut(s) 519
BspACI CCGC 9 cut(s) 118, 121, 164, 250, 361, 418, 477, 749, 927
BspANI GGCC 7 cut(s) 98, 213, 231, 396, 413, 447, 722
BspCNI CTCAG 2 cut(s) 18, 847
BspEI TCCGGA 1 cut(s) 529
BspFNI CGCG 3 cut(s) 123, 252, 519
BspPI GGATC 2 cut(s) 299, 747
BspT107I GGYRCC 2 cut(s) 273, 455
BsrBI CCGCTC 1 cut(s) 479
BsrI ACTGG 2 cut(s) 723, 888
BssECI CCNNGG 7 cut(s) 92, 407, 408, 498, 523, 549, 730
BssMI GATC 4 cut(s) 304, 739, 898, 982
BssNI GRCGYC 2 cut(s) 274, 456
Bst2UI CCWGG 3 cut(s) 409, 499, 1015
Bst4CI ACNGT 3 cut(s) 247, 617, 628
Bst6I CTCTTC 1 cut(s) 965
BstACI GRCGYC 2 cut(s) 274, 456
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 294, 945
BstDEI CTNAG 2 cut(s) 26, 834
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 114, 972
BstFNI CGCG 3 cut(s) 123, 252, 519
BstH2I RGCGCY 2 cut(s) 277, 459
BstHHI GCGC 3 cut(s) 254, 276, 458
BstKTI GATC 4 cut(s) 307, 742, 901, 985
BstMAI GTCTC 2 cut(s) 472, 843
BstMBI GATC 4 cut(s) 304, 739, 898, 982
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 6 cut(s) 402, 453, 492, 675, 915, 924
BstNI CCWGG 3 cut(s) 409, 499, 1015
BstNSI RCATGY 1 cut(s) 1057
BstPAI GACNNNNGTC 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 817
BstSLI GKGCMC 4 cut(s) 100, 215, 415, 488
BstUI CGCG 3 cut(s) 123, 252, 519
BstV1I GCAGC 2 cut(s) 9, 266
BstX2I RGATCY 1 cut(s) 739
BstXI CCANNNNNNTGG 1 cut(s) 639
BstYI RGATCY 1 cut(s) 739
BsuI GTATCC 3 cut(s) 526, 602, 1044
BsuRI GGCC 7 cut(s) 98, 213, 231, 396, 413, 447, 722
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 114, 972
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 3 cut(s) 633, 867, 881
BtuMI TCGCGA 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 294, 945
CfoI GCGC 3 cut(s) 254, 276, 458
Cfr9I CCCGGG 3 cut(s) 523, 549, 730
CseI GACGC 3 cut(s) 112, 653, 949
Csp6I GTAC 2 cut(s) 461, 662
CviAII CATG 2 cut(s) 1046, 1054
CviQI GTAC 2 cut(s) 461, 662
DdeI CTNAG 2 cut(s) 26, 834
DinI GGCGCC 2 cut(s) 275, 457
DpnI GATC 4 cut(s) 306, 741, 900, 984
DpnII GATC 4 cut(s) 304, 739, 898, 982
DraIII CACNNNGTG 1 cut(s) 270
DriI GACNNNNNGTC 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 965
Eam1105I GACNNNNNGTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 965
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 5 cut(s) 32, 100, 215, 415, 439
Eco47I GGWCC 3 cut(s) 169, 527, 621
Eco53kI GAGCTC 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 3 cut(s) 523, 549, 730
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 4 cut(s) 97, 211, 212, 445
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 3 cut(s) 407, 497, 1013
EcoT38I GRGCYC 5 cut(s) 32, 100, 215, 415, 439
EgeI GGCGCC 2 cut(s) 275, 457
EheI GGCGCC 2 cut(s) 275, 457
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 2 cut(s) 1049, 1057
FaiI YATR 9 cut(s) 640, 667, 686, 788, 819, 850, 852, 1047, 1055
FaqI GGGAC 4 cut(s) 124, 271, 566, 656
FatI CATG 2 cut(s) 1045, 1053
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 1 cut(s) 850
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 4 cut(s) 23, 121, 255, 477
FokI GGATG 2 cut(s) 101, 959
FriOI GRGCYC 5 cut(s) 32, 100, 215, 415, 439
Fsp4HI GCNGC 4 cut(s) 23, 121, 255, 477
FspBI CTAG 1 cut(s) 597
GlaI GCGC 3 cut(s) 253, 275, 457
GluI GCNGC 4 cut(s) 23, 121, 255, 477
GsaI CCCAGC 1 cut(s) 292
HaeII RGCGCY 2 cut(s) 277, 459
HaeIII GGCC 7 cut(s) 98, 213, 231, 396, 413, 447, 722
HapII CCGG 9 cut(s) 167, 228, 482, 524, 530, 550, 603, 731, 976
HgaI GACGC 3 cut(s) 112, 653, 949
HhaI GCGC 3 cut(s) 254, 276, 458
Hin1I GRCGYC 2 cut(s) 274, 456
Hin1II CATG 2 cut(s) 1049, 1057
Hin6I GCGC 3 cut(s) 252, 274, 456
HinP1I GCGC 3 cut(s) 252, 274, 456
HinfI GANTC 4 cut(s) 58, 574, 769, 813
HpaII CCGG 9 cut(s) 167, 228, 482, 524, 530, 550, 603, 731, 976
HphI GGTGA 5 cut(s) 118, 178, 187, 738, 955
Hpy166II GTNNAC 2 cut(s) 589, 624
Hpy188I TCNGA 4 cut(s) 304, 434, 579, 711
Hpy188III TCNNGA 5 cut(s) 508, 518, 530, 597, 773
Hpy8I GTNNAC 2 cut(s) 589, 624
Hpy99I CGWCG 3 cut(s) 395, 455, 617
HpyAV CCTTC 4 cut(s) 46, 97, 342, 762
HpyCH4III ACNGT 3 cut(s) 247, 617, 628
HpyCH4IV ACGT 2 cut(s) 269, 390
HpyCH4V TGCA 4 cut(s) 9, 570, 669, 1011
HpyF10VI GCNNNNNNNGC 6 cut(s) 402, 453, 492, 675, 915, 924
HpyF3I CTNAG 2 cut(s) 26, 834
HpySE526I ACGT 2 cut(s) 269, 390
Hsp92I GRCGYC 2 cut(s) 274, 456
Hsp92II CATG 2 cut(s) 1049, 1057
HspAI GCGC 3 cut(s) 252, 274, 456
KasI GGCGCC 2 cut(s) 273, 455
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 304, 739, 898, 982
LmnI GCTCC 5 cut(s) 35, 74, 207, 484, 500
Lsp1109I GCAGC 2 cut(s) 9, 266
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 269, 390
MaeIII GTNAC 4 cut(s) 124, 193, 725, 1058
MalI GATC 4 cut(s) 306, 741, 900, 984
MbiI CCGCTC 1 cut(s) 479
MboI GATC 4 cut(s) 304, 739, 898, 982
MboII GAAGA 2 cut(s) 908, 952
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 6 cut(s) 32, 100, 215, 415, 439, 488
MluCI AATT 3 cut(s) 503, 692, 700
Mly113I GGCGCC 2 cut(s) 274, 456
MlyI GAGTC 2 cut(s) 568, 822
MmeI TCCRAC 1 cut(s) 873
MroI TCCGGA 1 cut(s) 529
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 9 cut(s) 167, 228, 482, 524, 530, 550, 603, 731, 976
MvaI CCWGG 3 cut(s) 409, 499, 1015
MvnI CGCG 3 cut(s) 123, 252, 519
MwoI GCNNNNNNNGC 6 cut(s) 402, 453, 492, 675, 915, 924
NarI GGCGCC 2 cut(s) 274, 456
NciI CCSGG 8 cut(s) 228, 483, 524, 525, 550, 551, 731, 732
NdeI CATATG 1 cut(s) 850
NdeII GATC 4 cut(s) 304, 739, 898, 982
NlaIII CATG 2 cut(s) 1049, 1057
NmuCI GTSAC 3 cut(s) 124, 193, 1058
NruI TCGCGA 1 cut(s) 519
NspI RCATGY 1 cut(s) 1057
PasI CCCWGGG 1 cut(s) 408
PcsI WCGNNNNNNNCGW 4 cut(s) 300, 456, 678, 687
PfeI GAWTC 2 cut(s) 58, 769
PkrI GCNGC 4 cut(s) 24, 122, 256, 478
PleI GAGTC 2 cut(s) 568, 821
PluTI GGCGCC 2 cut(s) 277, 459
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 2 cut(s) 568, 821
Ppu21I YACGTR 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 407, 497, 1013
PspCI CACGTG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 3 cut(s) 407, 497, 1013
PspOMI GGGCCC 3 cut(s) 96, 211, 411
PsuI RGATCY 1 cut(s) 739
RruI TCGCGA 1 cut(s) 519
RsaI GTAC 2 cut(s) 462, 663
RsaNI GTAC 2 cut(s) 461, 662
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 32
SatI GCNGC 4 cut(s) 23, 121, 255, 477
Sau3AI GATC 4 cut(s) 304, 739, 898, 982
ScaI AGTACT 1 cut(s) 663
SchI GAGTC 2 cut(s) 568, 822
SduI GDGCHC 6 cut(s) 32, 100, 215, 415, 439, 488
SfcI CTRYAG 1 cut(s) 817
SfoI GGCGCC 2 cut(s) 275, 457
SinI GGWCC 3 cut(s) 169, 527, 621
SmaI CCCGGG 3 cut(s) 525, 551, 732
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 503, 692, 700
SsiI CCGC 9 cut(s) 118, 121, 164, 250, 361, 418, 477, 749, 927
SspDI GGCGCC 2 cut(s) 273, 455
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 32
TaaI ACNGT 3 cut(s) 247, 617, 628
TaiI ACGT 2 cut(s) 272, 393
TaqI TCGA 6 cut(s) 343, 450, 540, 690, 981, 1029
TaqII GACCGA 1 cut(s) 609
TasI AATT 3 cut(s) 503, 692, 700
TatI WGTACW 1 cut(s) 661
TauI GCSGC 2 cut(s) 123, 479
TfiI GAWTC 2 cut(s) 58, 769
TscAI CASTG 3 cut(s) 633, 867, 888
TseFI GTSAC 3 cut(s) 124, 193, 1058
TseI GCWGC 2 cut(s) 22, 254
Tsp45I GTSAC 3 cut(s) 124, 193, 1058
TspDTI ATGAA 4 cut(s) 17, 729, 744, 948
TspGWI ACGGA 2 cut(s) 181, 503
TspMI CCCGGG 3 cut(s) 523, 549, 730
TspRI CASTG 3 cut(s) 633, 867, 888
VpaK11BI GGWCC 3 cut(s) 169, 527, 621
XapI RAATTY 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XmaI CCCGGG 3 cut(s) 523, 549, 730
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.