Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014588.1

Orthogroup ID

OG0011304

Physical Location & Seq

Genomic Coordinates Forward (+)

10905 .. 12026

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014588.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgggagcctccaagaccagacctttactcttgccatcttcattcttcttgctgcttctcacactgtcatggacttctccaataacccatttggctctggcccagcaacaacaacaacaacaacaacccatcaagaccattgtggttctggtcatggagaacaggtcctttgatcacttgcttgggtggatgaagaaagctataaacccagccatcaatggcgtcacaggccaagaatgtaaccctgtttcgaccaaaaacccggacccgaagtccatctgcttcacggacgatgccgagtttgtggatccggatccgggtcattcgtttgaggctgtgacgcagcaggtgtttgggtctagtcctaatccttcaatgtcaggttttgttgagcaagcactttctatgtctcccaatctatccgagactgtcatgaaggggtttaggccggaatctgtgccggtttacgcttctttagtcggtgaatttgcggtttttgataggtggttctctgcaattccgggcccaacacagcctaacaggctgtttgtgtactctgcaacttcacacggctccaccagccatgtgaagaagcaattggctcggggctacccgcagaaaacaatattcgactcggttcatgagaatggcatggattttggggtctacttccagaacatacccaccaccatgttttacagaaacatgagaaagttgaaatacatattgaaatttcatcagtatgatttgaagttcaagaaacatgctagagatggcaagctaccgagcttgacggtgatcgagcctcgctatttcgatctgaaagggatgccggcgaacgatgatcacccttctcatgatgttgccaatgggcagaagctggtgaaggaggtctatgagacactgagggctagtcctcagtggaatgagacccttttggtcattacttatgatgagcatggtgggttttatgatcatgtccagactccttatgtcaatgtccctaatccggatgggaatagcggccctgctccttatttcttcaagtttgatcggctcggcgttcgcgtgccgacgattatgatctctccatggatcaagaaagggaccggtaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009405 GO:0009987 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0034480 GO:0035821 GO:0042578 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0046434 GO:0051701 GO:0051704 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

373

Amino Acids

42.01

Weight (kDa)

8.61

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48610
fragaria_vesca	FvH4_5g08480 FvH4_5g08480 FvH4_5g08480
malus_domestica	MD06G1140600.v1.1 MD14G1156100.v1.1
prunus_persica	Prupe.5G149800_v2.0.a1
pyrus_communis	pycom06g13060 pycom14g12960
rosa_chinensis	RchiOBHm_Chr7g0189931
rosa_laevigata	RLG00000004576
rosa_multiflora	Rmu_sc0014588.1_g000003 Rmu_sc0033399.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265040
rosa_rugosa	Rorug06G0501200
rosa_samantha	Rh7AG106300 Rh7BG109000 Rh7CG111100 Rh7DG109500
rosa_wichuraiana	Rw7G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	1 cut(s)	1068
AccIII	TCCGGA	2 cut(s)	310, 1009
AciI	CCGC	3 cut(s)	491, 614, 1023
AclWI	GGATC	5 cut(s)	302, 308, 315, 321, 1103
AcsI	RAATTY	2 cut(s)	485, 731
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	317, 1009
AgeI	ACCGGT	1 cut(s)	1109
AgsI	TTSAA	6 cut(s)	375, 718, 730, 751, 757, 1045
AhdI	GACNNNNNGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	4 cut(s)	200, 781, 789, 880
AluI	AGCT	4 cut(s)	200, 781, 789, 880
Alw26I	GTCTC	4 cut(s)	414, 419, 893, 923
AlwI	GGATC	5 cut(s)	302, 308, 315, 321, 1103
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	603
Aor13HI	TCCGGA	2 cut(s)	310, 1009
AoxI	GGCC	5 cut(s)	99, 229, 446, 523, 1024
ApaI	GGGCCC	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	52, 343
ApoI	RAATTY	2 cut(s)	485, 731
AsiGI	ACCGGT	1 cut(s)	1109
AspS9I	GGNCC	7 cut(s)	100, 165, 265, 523, 524, 1025, 1107
AsuC2I	CCSGG	3 cut(s)	263, 318, 522
AsuHPI	GGTGA	4 cut(s)	494, 808, 839, 895
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	3 cut(s)	165, 265, 1107
BaeGI	GKGCMC	1 cut(s)	527
BamHI	GGATCC	2 cut(s)	307, 313
BanII	GRGCYC	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	39, 355
BccI	CCATC	6 cut(s)	43, 137, 221, 284, 767, 1007
BceAI	ACGGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BclI	TGATCA	3 cut(s)	172, 844, 973
BcnI	CCSGG	3 cut(s)	263, 318, 522
BcoDI	GTCTC	4 cut(s)	414, 419, 893, 923
BfaI	CTAG	4 cut(s)	360, 768, 912, 1120
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	541
BisI	GCNGC	3 cut(s)	53, 344, 1024
BlsI	GCNGC	3 cut(s)	54, 345, 1025
Bme1390I	CCNGG	3 cut(s)	263, 318, 522
Bme18I	GGWCC	3 cut(s)	165, 265, 1107
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	7 cut(s)	100, 165, 265, 523, 524, 1025, 1107
BmiI	GGNNCC	7 cut(s)	7, 267, 309, 315, 525, 574, 1108
BmrFI	CCNGG	3 cut(s)	263, 318, 522
BmsI	GCATC	2 cut(s)	283, 819
BpuMI	CCSGG	3 cut(s)	263, 318, 522
BsaBI	GATNNNNATC	2 cut(s)	312, 1082
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	1091
BsaWI	WCCGGW	3 cut(s)	310, 1009, 1109
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 1009
Bse118I	RCCGGY	3 cut(s)	460, 832, 1109
Bse8I	GATNNNNATC	2 cut(s)	312, 1082
BseAI	TCCGGA	2 cut(s)	310, 1009
BseDI	CCNNGG	1 cut(s)	1091
BseGI	GGATG	3 cut(s)	195, 834, 1018
BseJI	GATNNNNATC	2 cut(s)	312, 1082
BseLI	CCNNNNNNNGG	2 cut(s)	317, 1009
BseMII	CTCAG	2 cut(s)	896, 932
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	39, 355
BseYI	CCCAGC	2 cut(s)	102, 208
Bsh1236I	CGCG	1 cut(s)	1068
BshFI	GGCC	5 cut(s)	101, 231, 448, 525, 1026
BshTI	ACCGGT	1 cut(s)	1109
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	9 cut(s)	263, 311, 317, 449, 461, 521, 833, 1010, 1110
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	2 cut(s)	317, 1009
BsmAI	GTCTC	4 cut(s)	414, 419, 893, 923
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	5 cut(s)	101, 231, 448, 525, 1026
Bso31I	GGTCTC	1 cut(s)	923
BsoBI	CYCGRG	1 cut(s)	603
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp13I	TCCGGA	2 cut(s)	310, 1009
Bsp19I	CCATGG	1 cut(s)	1091
BspACI	CCGC	3 cut(s)	491, 614, 1023
BspANI	GGCC	5 cut(s)	101, 231, 448, 525, 1026
BspCNI	CTCAG	2 cut(s)	897, 931
BspEI	TCCGGA	2 cut(s)	310, 1009
BspFNI	CGCG	1 cut(s)	1068
BspHI	TCATGA	3 cut(s)	432, 640, 856
BspLI	GGNNCC	7 cut(s)	7, 267, 309, 315, 525, 574, 1108
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	5 cut(s)	302, 308, 315, 321, 1103
BspTNI	GGTCTC	1 cut(s)	923
BsrFI	RCCGGY	3 cut(s)	460, 832, 1109
BssAI	RCCGGY	3 cut(s)	460, 832, 1109
BssECI	CCNNGG	1 cut(s)	1091
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	1091
Bst4CI	ACNGT	3 cut(s)	66, 430, 796
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	396, 779, 834, 1070
BstDEI	CTNAG	2 cut(s)	905, 918
BstDSI	CCRYGG	1 cut(s)	1091
BstF5I	GGATG	3 cut(s)	195, 834, 1018
BstFNI	CGCG	1 cut(s)	1068
BstMAI	GTCTC	4 cut(s)	414, 419, 893, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 541, 579
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	261, 316, 520
BstSLI	GKGCMC	1 cut(s)	527
BstUI	CGCG	1 cut(s)	1068
BstV1I	GCAGC	2 cut(s)	39, 355
BstX2I	RGATCY	2 cut(s)	307, 313
BstYI	RGATCY	2 cut(s)	307, 313
BsuRI	GGCC	5 cut(s)	101, 231, 448, 525, 1026
BtgI	CCRYGG	1 cut(s)	1091
BtsCI	GGATG	3 cut(s)	195, 834, 1018
BtsIMutI	CAGTG	3 cut(s)	62, 902, 926
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	4 cut(s)	396, 779, 834, 1070
CaiI	CAGNNNCTG	1 cut(s)	880
CciI	TCATGA	3 cut(s)	432, 640, 856
Cfr10I	RCCGGY	3 cut(s)	460, 832, 1109
Cfr13I	GGNCC	7 cut(s)	100, 165, 265, 523, 524, 1025, 1107
CseI	GACGC	2 cut(s)	211, 349
Csp6I	GTAC	1 cut(s)	553
CspAI	ACCGGT	1 cut(s)	1109
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	905, 918
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	1091
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	923
Eco47I	GGWCC	3 cut(s)	165, 265, 1107
Eco88I	CYCGRG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	1091
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	1091
FaqI	GGGAC	1 cut(s)	986
FauI	CCCGC	1 cut(s)	621
FbaI	TGATCA	3 cut(s)	172, 844, 973
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	53, 344, 1024
FokI	GGATG	3 cut(s)	202, 841, 1025
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	53, 344, 1024
FspBI	CTAG	4 cut(s)	360, 768, 912, 1120
GluI	GCNGC	3 cut(s)	53, 344, 1024
GsaI	CCCAGC	2 cut(s)	106, 212
HaeIII	GGCC	5 cut(s)	101, 231, 448, 525, 1026
HapII	CCGG	9 cut(s)	263, 311, 317, 449, 461, 521, 833, 1010, 1110
HgaI	GACGC	2 cut(s)	211, 349
Hin1I	GRCGYC	1 cut(s)	222
HinfI	GANTC	3 cut(s)	452, 632, 985
HpaII	CCGG	9 cut(s)	263, 311, 317, 449, 461, 521, 833, 1010, 1110
HphI	GGTGA	4 cut(s)	494, 808, 839, 895
Hpy166II	GTNNAC	3 cut(s)	466, 553, 667
Hpy188I	TCNGA	2 cut(s)	424, 822
Hpy8I	GTNNAC	3 cut(s)	466, 553, 667
Hpy99I	CGWCG	1 cut(s)	1078
HpyAV	CCTTC	4 cut(s)	381, 430, 861, 880
HpyCH4III	ACNGT	3 cut(s)	66, 430, 796
HpyCH4V	TGCA	2 cut(s)	515, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 541, 579
HpyF3I	CTNAG	2 cut(s)	905, 918
Hsp92I	GRCGYC	1 cut(s)	222
Kpn2I	TCCGGA	2 cut(s)	310, 1009
KroI	GCCGGC	1 cut(s)	832
KroNI	GCCGGC	1 cut(s)	834
Ksp22I	TGATCA	3 cut(s)	172, 844, 973
LmnI	GCTCC	3 cut(s)	5, 578, 1036
Lsp1109I	GCAGC	2 cut(s)	39, 355
LweI	GCATC	2 cut(s)	283, 819
MaeI	CTAG	4 cut(s)	360, 768, 912, 1120
MaeIII	GTNAC	4 cut(s)	223, 239, 337, 1112
MboII	GAAGA	5 cut(s)	30, 37, 205, 601, 1033
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	2 cut(s)	307, 313
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	4 cut(s)	485, 516, 596, 731
MlyI	GAGTC	2 cut(s)	626, 979
MnlI	CCTC	6 cut(s)	19, 325, 816, 883, 900, 927
MroI	TCCGGA	2 cut(s)	310, 1009
MroNI	GCCGGC	1 cut(s)	832
MslI	CAYNNNNRTG	4 cut(s)	67, 645, 689, 741
MspI	CCGG	9 cut(s)	263, 311, 317, 449, 461, 521, 833, 1010, 1110
MspR9I	CCNGG	3 cut(s)	263, 318, 522
MunI	CAATTG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	3 cut(s)	228, 541, 579
NaeI	GCCGGC	1 cut(s)	834
NciI	CCSGG	3 cut(s)	263, 318, 522
NcoI	CCATGG	1 cut(s)	1091
NgoMIV	GCCGGC	1 cut(s)	832
NlaIV	GGNNCC	7 cut(s)	7, 267, 309, 315, 525, 574, 1108
NmeAIII	GCCGAG	2 cut(s)	322, 1038
NmuCI	GTSAC	2 cut(s)	223, 337
NspI	RCATGY	1 cut(s)	767
PagI	TCATGA	3 cut(s)	432, 640, 856
PaqCI	CACCTGC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	1065
PdiI	GCCGGC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	452
PinAI	ACCGGT	1 cut(s)	1109
PkrI	GCNGC	3 cut(s)	54, 345, 1025
PleI	GAGTC	2 cut(s)	626, 979
PpsI	GAGTC	2 cut(s)	626, 979
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	102, 208
PspN4I	GGNNCC	7 cut(s)	7, 267, 309, 315, 525, 574, 1108
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	7 cut(s)	100, 165, 265, 523, 524, 1025, 1107
PspPPI	RGGWCCY	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	2 cut(s)	307, 313
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	4 cut(s)	67, 645, 689, 741
SatI	GCNGC	3 cut(s)	53, 344, 1024
Sau96I	GGNCC	7 cut(s)	100, 165, 265, 523, 524, 1025, 1107
SchI	GAGTC	2 cut(s)	626, 979
ScrFI	CCNGG	3 cut(s)	263, 318, 522
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	283, 819
SinI	GGWCC	3 cut(s)	165, 265, 1107
SmiMI	CAYNNNNRTG	4 cut(s)	67, 645, 689, 741
Sse9I	AATT	4 cut(s)	485, 516, 596, 731
SsiI	CCGC	3 cut(s)	491, 614, 1023
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	4 cut(s)	360, 768, 912, 1120
StyD4I	CCNGG	3 cut(s)	261, 316, 520
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	3 cut(s)	66, 430, 796
TaqI	TCGA	4 cut(s)	251, 630, 801, 816
TasI	AATT	4 cut(s)	485, 516, 596, 731
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	1 cut(s)	452
TscAI	CASTG	3 cut(s)	69, 909, 926
TseFI	GTSAC	2 cut(s)	223, 337
TseI	GCWGC	2 cut(s)	52, 343
Tsp45I	GTSAC	2 cut(s)	223, 337
TspDTI	ATGAA	5 cut(s)	30, 206, 449, 629, 725
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	69, 909, 926
VpaK11BI	GGWCC	3 cut(s)	165, 265, 1107
XapI	RAATTY	2 cut(s)	485, 731
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	4 cut(s)	360, 768, 912, 1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.