Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033399.1

Orthogroup ID

OG0011304

Physical Location & Seq

Genomic Coordinates Forward (+)

1850 .. 2968

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgggagcctccaagaccagacctttactcttgccatcttcattcttcttgctgcttctcacactgtcatggacttctccaataactcatttggctctggcccagcaacaacaacaacaacaacccatcaagaccattgtggttctggtcatggagaacaggtcctttgatcacttgcttgggtggatgaagaaagctataaacccagccatcaatggcgtcacaggccaagaatgtaaccctgtttcgaccaaaaacccggacccgaagtccatctgcttcacggacgatgccgagtttgtggatccggatccgggtcattcgtttgaggctgtgacgcagcaggtgtttgggtctagtcctaatccttcaatgtcaggttttgttgagcaagcactttctatgtctcccaatctatccgagactgtcatgaaggggtttaggccggaatctgtgccggtttacgcttctttagtcggtgaatttgcggtttttgataggtggttctctgcaattccgggcccaacacagcctaacaggctgtttgtgtactctgcaacttcacacggctccaccagccatgtgaagaagcaattggctcggggctacccgcagaaaacaatattcgactcggttcatgagaatggcatggattttggggtctacttccagaacatacccaccaccatgttttacagaaacatgagaaagttgaaatacatattgaaatttcatcagtatgatttgaagttcaagaaacatgctagagatggcaagctaccgagcttgacggtgatcgagcctcgctatttcgatctgaaagggatgccggcgaacgatgatcacccttctcatgatgttgccaatgggcagaagctggtgaaggaggtctatgagacactgagggctagtcctcagtggaatgagacccttttggtcattacttatgatgagcatggtgggttttatgatcatgtccagactccttatgtcaatgtccctaatccggatgggaatagcggccctgctccttatttcttcaagtttgatcggctaggcgttcgagtgccgacgattatgatctctccatggatcaagaaagggaccggtaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009405 GO:0009987 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0034480 GO:0035821 GO:0042578 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0046434 GO:0051701 GO:0051704 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

372

Amino Acids

41.88

Weight (kDa)

8.61

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48610
fragaria_vesca	FvH4_5g08480 FvH4_5g08480 FvH4_5g08480
malus_domestica	MD06G1140600.v1.1 MD14G1156100.v1.1
prunus_persica	Prupe.5G149800_v2.0.a1
pyrus_communis	pycom06g13060 pycom14g12960
rosa_chinensis	RchiOBHm_Chr7g0189931
rosa_laevigata	RLG00000004576
rosa_multiflora	Rmu_sc0014588.1_g000003 Rmu_sc0033399.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265040
rosa_rugosa	Rorug06G0501200
rosa_samantha	Rh7AG106300 Rh7BG109000 Rh7CG111100 Rh7DG109500
rosa_wichuraiana	Rw7G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	663
AccIII	TCCGGA	2 cut(s)	307, 1006
AciI	CCGC	3 cut(s)	488, 611, 1020
AclWI	GGATC	5 cut(s)	299, 305, 312, 318, 1100
AcsI	RAATTY	2 cut(s)	482, 728
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	314, 1006
AgeI	ACCGGT	1 cut(s)	1106
AgsI	TTSAA	6 cut(s)	372, 715, 727, 748, 754, 1042
AhdI	GACNNNNNGTC	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	4 cut(s)	197, 778, 786, 877
AluI	AGCT	4 cut(s)	197, 778, 786, 877
Alw26I	GTCTC	4 cut(s)	411, 416, 890, 920
AlwI	GGATC	5 cut(s)	299, 305, 312, 318, 1100
AlwNI	CAGNNNCTG	1 cut(s)	877
Ama87I	CYCGRG	1 cut(s)	600
Aor13HI	TCCGGA	2 cut(s)	307, 1006
AoxI	GGCC	5 cut(s)	99, 226, 443, 520, 1021
ApaI	GGGCCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	52, 340
ApoI	RAATTY	2 cut(s)	482, 728
AsiGI	ACCGGT	1 cut(s)	1106
AspS9I	GGNCC	7 cut(s)	100, 162, 262, 520, 521, 1022, 1104
AsuC2I	CCSGG	3 cut(s)	260, 315, 519
AsuHPI	GGTGA	4 cut(s)	491, 805, 836, 892
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	3 cut(s)	162, 262, 1104
BaeGI	GKGCMC	1 cut(s)	524
BamHI	GGATCC	2 cut(s)	304, 310
BanII	GRGCYC	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	39, 352
BccI	CCATC	6 cut(s)	43, 134, 218, 281, 764, 1004
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BclI	TGATCA	3 cut(s)	169, 841, 970
BcnI	CCSGG	3 cut(s)	260, 315, 519
BcoDI	GTCTC	4 cut(s)	411, 416, 890, 920
BfaI	CTAG	5 cut(s)	357, 765, 909, 1055, 1117
BfuAI	ACCTGC	1 cut(s)	334
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	53, 341, 1021
BlsI	GCNGC	3 cut(s)	54, 342, 1022
Bme1390I	CCNGG	3 cut(s)	260, 315, 519
Bme18I	GGWCC	3 cut(s)	162, 262, 1104
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	7 cut(s)	100, 162, 262, 520, 521, 1022, 1104
BmiI	GGNNCC	7 cut(s)	7, 264, 306, 312, 522, 571, 1105
BmrFI	CCNGG	3 cut(s)	260, 315, 519
BmsI	GCATC	2 cut(s)	280, 816
BpuMI	CCSGG	3 cut(s)	260, 315, 519
BsaBI	GATNNNNATC	2 cut(s)	309, 1079
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	1088
BsaWI	WCCGGW	3 cut(s)	307, 1006, 1106
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 1006
Bse118I	RCCGGY	3 cut(s)	457, 829, 1106
Bse8I	GATNNNNATC	2 cut(s)	309, 1079
BseAI	TCCGGA	2 cut(s)	307, 1006
BseDI	CCNNGG	1 cut(s)	1088
BseGI	GGATG	3 cut(s)	192, 831, 1015
BseJI	GATNNNNATC	2 cut(s)	309, 1079
BseLI	CCNNNNNNNGG	2 cut(s)	314, 1006
BseMII	CTCAG	2 cut(s)	893, 929
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	39, 352
BseYI	CCCAGC	2 cut(s)	102, 205
BshFI	GGCC	5 cut(s)	101, 228, 445, 522, 1023
BshTI	ACCGGT	1 cut(s)	1106
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	9 cut(s)	260, 308, 314, 446, 458, 518, 830, 1007, 1107
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	2 cut(s)	314, 1006
BsmAI	GTCTC	4 cut(s)	411, 416, 890, 920
BsmFI	GGGAC	1 cut(s)	983
BsnI	GGCC	5 cut(s)	101, 228, 445, 522, 1023
Bso31I	GGTCTC	1 cut(s)	920
BsoBI	CYCGRG	1 cut(s)	600
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp13I	TCCGGA	2 cut(s)	307, 1006
Bsp19I	CCATGG	1 cut(s)	1088
BspACI	CCGC	3 cut(s)	488, 611, 1020
BspANI	GGCC	5 cut(s)	101, 228, 445, 522, 1023
BspCNI	CTCAG	2 cut(s)	894, 928
BspEI	TCCGGA	2 cut(s)	307, 1006
BspHI	TCATGA	3 cut(s)	429, 637, 853
BspLI	GGNNCC	7 cut(s)	7, 264, 306, 312, 522, 571, 1105
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	5 cut(s)	299, 305, 312, 318, 1100
BspTNI	GGTCTC	1 cut(s)	920
BsrFI	RCCGGY	3 cut(s)	457, 829, 1106
BssAI	RCCGGY	3 cut(s)	457, 829, 1106
BssECI	CCNNGG	1 cut(s)	1088
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	1088
Bst4CI	ACNGT	3 cut(s)	66, 427, 793
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	393, 776, 831
BstDEI	CTNAG	2 cut(s)	902, 915
BstDSI	CCRYGG	1 cut(s)	1088
BstF5I	GGATG	3 cut(s)	192, 831, 1015
BstMAI	GTCTC	4 cut(s)	411, 416, 890, 920
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 538, 576
BstNSI	RCATGY	1 cut(s)	764
BstSCI	CCNGG	3 cut(s)	258, 313, 517
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	39, 352
BstX2I	RGATCY	2 cut(s)	304, 310
BstYI	RGATCY	2 cut(s)	304, 310
BsuRI	GGCC	5 cut(s)	101, 228, 445, 522, 1023
BtgI	CCRYGG	1 cut(s)	1088
BtsCI	GGATG	3 cut(s)	192, 831, 1015
BtsIMutI	CAGTG	3 cut(s)	62, 899, 923
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	393, 776, 831
CaiI	CAGNNNCTG	1 cut(s)	877
CciI	TCATGA	3 cut(s)	429, 637, 853
Cfr10I	RCCGGY	3 cut(s)	457, 829, 1106
Cfr13I	GGNCC	7 cut(s)	100, 162, 262, 520, 521, 1022, 1104
CseI	GACGC	2 cut(s)	208, 346
Csp6I	GTAC	1 cut(s)	550
CspAI	ACCGGT	1 cut(s)	1106
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	902, 915
DriI	GACNNNNNGTC	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	1088
Eco24I	GRGCYC	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	3 cut(s)	162, 262, 1104
Eco88I	CYCGRG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	1088
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	1088
FaqI	GGGAC	1 cut(s)	983
FauI	CCCGC	1 cut(s)	618
FbaI	TGATCA	3 cut(s)	169, 841, 970
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	53, 341, 1021
FokI	GGATG	3 cut(s)	199, 838, 1022
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	3 cut(s)	53, 341, 1021
FspBI	CTAG	5 cut(s)	357, 765, 909, 1055, 1117
GluI	GCNGC	3 cut(s)	53, 341, 1021
GsaI	CCCAGC	2 cut(s)	106, 209
HaeIII	GGCC	5 cut(s)	101, 228, 445, 522, 1023
HapII	CCGG	9 cut(s)	260, 308, 314, 446, 458, 518, 830, 1007, 1107
HgaI	GACGC	2 cut(s)	208, 346
Hin1I	GRCGYC	1 cut(s)	219
HinfI	GANTC	3 cut(s)	449, 629, 982
HpaII	CCGG	9 cut(s)	260, 308, 314, 446, 458, 518, 830, 1007, 1107
HphI	GGTGA	4 cut(s)	491, 805, 836, 892
Hpy166II	GTNNAC	3 cut(s)	463, 550, 664
Hpy188I	TCNGA	2 cut(s)	421, 819
Hpy8I	GTNNAC	3 cut(s)	463, 550, 664
Hpy99I	CGWCG	1 cut(s)	1075
HpyAV	CCTTC	4 cut(s)	378, 427, 858, 877
HpyCH4III	ACNGT	3 cut(s)	66, 427, 793
HpyCH4V	TGCA	2 cut(s)	512, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 538, 576
HpyF3I	CTNAG	2 cut(s)	902, 915
Hsp92I	GRCGYC	1 cut(s)	219
Kpn2I	TCCGGA	2 cut(s)	307, 1006
KroI	GCCGGC	1 cut(s)	829
KroNI	GCCGGC	1 cut(s)	831
Ksp22I	TGATCA	3 cut(s)	169, 841, 970
LmnI	GCTCC	3 cut(s)	5, 575, 1033
Lsp1109I	GCAGC	2 cut(s)	39, 352
LweI	GCATC	2 cut(s)	280, 816
MaeI	CTAG	5 cut(s)	357, 765, 909, 1055, 1117
MaeIII	GTNAC	4 cut(s)	220, 236, 334, 1109
MboII	GAAGA	5 cut(s)	30, 37, 202, 598, 1030
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	2 cut(s)	304, 310
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	4 cut(s)	482, 513, 593, 728
MlyI	GAGTC	2 cut(s)	623, 976
MnlI	CCTC	6 cut(s)	19, 322, 813, 880, 897, 924
MroI	TCCGGA	2 cut(s)	307, 1006
MroNI	GCCGGC	1 cut(s)	829
MslI	CAYNNNNRTG	4 cut(s)	67, 642, 686, 738
MspI	CCGG	9 cut(s)	260, 308, 314, 446, 458, 518, 830, 1007, 1107
MspR9I	CCNGG	3 cut(s)	260, 315, 519
MunI	CAATTG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	225, 538, 576
NaeI	GCCGGC	1 cut(s)	831
NciI	CCSGG	3 cut(s)	260, 315, 519
NcoI	CCATGG	1 cut(s)	1088
NgoMIV	GCCGGC	1 cut(s)	829
NlaIV	GGNNCC	7 cut(s)	7, 264, 306, 312, 522, 571, 1105
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	220, 334
NspI	RCATGY	1 cut(s)	764
PagI	TCATGA	3 cut(s)	429, 637, 853
PaqCI	CACCTGC	1 cut(s)	334
PdiI	GCCGGC	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	1106
PkrI	GCNGC	3 cut(s)	54, 342, 1022
PleI	GAGTC	2 cut(s)	623, 976
PpsI	GAGTC	2 cut(s)	623, 976
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspFI	CCCAGC	2 cut(s)	102, 205
PspN4I	GGNNCC	7 cut(s)	7, 264, 306, 312, 522, 571, 1105
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	7 cut(s)	100, 162, 262, 520, 521, 1022, 1104
PspPPI	RGGWCCY	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	304, 310
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	4 cut(s)	67, 642, 686, 738
SatI	GCNGC	3 cut(s)	53, 341, 1021
Sau96I	GGNCC	7 cut(s)	100, 162, 262, 520, 521, 1022, 1104
SchI	GAGTC	2 cut(s)	623, 976
ScrFI	CCNGG	3 cut(s)	260, 315, 519
SduI	GDGCHC	1 cut(s)	524
SfaNI	GCATC	2 cut(s)	280, 816
SinI	GGWCC	3 cut(s)	162, 262, 1104
SmiMI	CAYNNNNRTG	4 cut(s)	67, 642, 686, 738
Sse9I	AATT	4 cut(s)	482, 513, 593, 728
SsiI	CCGC	3 cut(s)	488, 611, 1020
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	5 cut(s)	357, 765, 909, 1055, 1117
StyD4I	CCNGG	3 cut(s)	258, 313, 517
StyI	CCWWGG	1 cut(s)	1088
TaaI	ACNGT	3 cut(s)	66, 427, 793
TaqI	TCGA	5 cut(s)	248, 627, 798, 813, 1063
TasI	AATT	4 cut(s)	482, 513, 593, 728
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	1023
TfiI	GAWTC	1 cut(s)	449
TscAI	CASTG	3 cut(s)	69, 906, 923
TseFI	GTSAC	2 cut(s)	220, 334
TseI	GCWGC	2 cut(s)	52, 340
Tsp45I	GTSAC	2 cut(s)	220, 334
TspDTI	ATGAA	5 cut(s)	30, 203, 446, 626, 722
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	3 cut(s)	69, 906, 923
VpaK11BI	GGWCC	3 cut(s)	162, 262, 1104
XapI	RAATTY	2 cut(s)	482, 728
XceI	RCATGY	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	5 cut(s)	357, 765, 909, 1055, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.