Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011304

Physical Location & Seq

Genomic Coordinates Forward (+)

8608310 .. 8611765

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAGCCTCCAAGACCAGACCTTTACTCTTGCCATCTTCATTCTTCTTGCTGCTTCTCACACTGTCATGGACTTCTCCAATAACCCATTTGGCTCTGGCCCAGCAACAACAACCCATCAAGACCATTGTGGTTCTGGTCATGGAGAACAGGTCCTTTGATCACTTGCTTGGGTGGATGAAGAAAGCTATAAACCCAGCCATCAATGGCGTCACAGGCCAAGAATGTAACCCTGTTTCGACCAAAAACCAGGACCCGAAGTCCGTCTGCTTCACGGACGATGCCGAGTTTGTGGATCCGGATCCGGGTCATTCGTTTGAGGCTGTGACGCAGCAGGTATTTGGGTCTAGTCCTAATCCTTCAATGTCAGGTTTTGTTGAGCAAGCACTTTCTATGTCTCCCAATCTATCCGAGACTGTCATGAAGGGGTTTAGGCCGGAATCTGTGCCGGTTTACGCTTCTTTAGTCGGTGAATTTGCGGTTTTTGATAGGTGGTTCTCTGCAATTCCGGGCCCAACACAGCCTAACAGGCTGTTTGTGTACTCTGCAACTTCACACGGCTCCACCAGCCATGTGAAGAAGCAATTGGCTCGGGGCTACCCGCAGAAAACAATATTCGACTCGGTTCATGAGAATGGCATGGATTTTGGGGTCTACTTCCAGAACATACCCACCACCATGTTTTACAGAAACATGAGGAAGTTGAAATACATATTGAAATTTCATCAGTATGATTTGAAGTTCAAGAAACATGCTAGAGATGGCAAGCTACCGAGCTTGACGGTGATCGAGCCGCGCTATTTCGATCTGAAAGGGATGCCGGCGAACGATGATCACCCTTCTCATGATGTTGCCAATGGGCAGAAGCTGGTGAAGGAGGTCTATGAGACACTGAGGGCTAGTCCTCAGTGGAATGAGACCCTTTTGGTCATTACTTATGATGAGCATGGTGGGTTTTATGATCATGTCCAGACTCCTTATGTCAATGTCCCTAATCCGGATGGGAATAGCGGCCCTGCTCCTTATTTCTTCAAGTTTGATCGGCTAGGCGTTCGCGTGCCGACGATTATGATCTCTCCATGGATCAAGAAAGGGACCGGTAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009405 GO:0009987 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0034480 GO:0035821 GO:0042578 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0046434 GO:0051701 GO:0051704 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

369

Amino Acids

41.52

Weight (kDa)

8.61

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	40 - 366	6.9e-102	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48610
fragaria_vesca	FvH4_5g08480 FvH4_5g08480 FvH4_5g08480
malus_domestica	MD06G1140600.v1.1 MD14G1156100.v1.1
prunus_persica	Prupe.5G149800_v2.0.a1
pyrus_communis	pycom06g13060 pycom14g12960
rosa_chinensis	RchiOBHm_Chr7g0189931
rosa_laevigata	RLG00000004576
rosa_multiflora	Rmu_sc0014588.1_g000003 Rmu_sc0033399.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265040
rosa_rugosa	Rorug06G0501200
rosa_samantha	Rh7AG106300 Rh7BG109000 Rh7CG111100 Rh7DG109500
rosa_wichuraiana	Rw7G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	2 cut(s)	796, 1056
AccIII	TCCGGA	2 cut(s)	298, 997
AciI	CCGC	4 cut(s)	479, 602, 794, 1011
AclWI	GGATC	5 cut(s)	290, 296, 303, 309, 1091
AcsI	RAATTY	2 cut(s)	473, 719
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	305, 997
AgeI	ACCGGT	1 cut(s)	1097
AgsI	TTSAA	6 cut(s)	363, 706, 718, 739, 745, 1033
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	4 cut(s)	188, 769, 777, 868
AluI	AGCT	4 cut(s)	188, 769, 777, 868
Alw26I	GTCTC	4 cut(s)	402, 407, 881, 911
AlwI	GGATC	5 cut(s)	290, 296, 303, 309, 1091
AlwNI	CAGNNNCTG	1 cut(s)	868
Ama87I	CYCGRG	1 cut(s)	591
Aor13HI	TCCGGA	2 cut(s)	298, 997
AoxI	GGCC	5 cut(s)	99, 217, 434, 511, 1012
ApaI	GGGCCC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	52, 331
ApoI	RAATTY	2 cut(s)	473, 719
AsiGI	ACCGGT	1 cut(s)	1097
AspLEI	GCGC	1 cut(s)	798
AspS9I	GGNCC	7 cut(s)	100, 153, 253, 511, 512, 1013, 1095
AsuC2I	CCSGG	2 cut(s)	306, 510
AsuHPI	GGTGA	4 cut(s)	482, 796, 827, 883
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	3 cut(s)	153, 253, 1095
BaeGI	GKGCMC	1 cut(s)	515
BamHI	GGATCC	2 cut(s)	295, 301
BanII	GRGCYC	1 cut(s)	515
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbvI	GCAGC	2 cut(s)	39, 343
BccI	CCATC	5 cut(s)	43, 125, 209, 755, 995
BceAI	ACGGC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	3 cut(s)	160, 832, 961
BcnI	CCSGG	2 cut(s)	306, 510
BcoDI	GTCTC	4 cut(s)	402, 407, 881, 911
BfaI	CTAG	5 cut(s)	348, 756, 900, 1046, 1108
BfuAI	ACCTGC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	53, 332, 794, 1012
BlsI	GCNGC	4 cut(s)	54, 333, 795, 1013
Bme1390I	CCNGG	3 cut(s)	251, 306, 510
Bme18I	GGWCC	3 cut(s)	153, 253, 1095
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	7 cut(s)	100, 153, 253, 511, 512, 1013, 1095
BmiI	GGNNCC	7 cut(s)	7, 255, 297, 303, 513, 562, 1096
BmrFI	CCNGG	3 cut(s)	251, 306, 510
BmsI	GCATC	2 cut(s)	271, 807
BpuMI	CCSGG	2 cut(s)	306, 510
BsaBI	GATNNNNATC	2 cut(s)	300, 1070
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	1 cut(s)	1079
BsaWI	WCCGGW	3 cut(s)	298, 997, 1097
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 997
Bse118I	RCCGGY	3 cut(s)	448, 820, 1097
Bse8I	GATNNNNATC	2 cut(s)	300, 1070
BseAI	TCCGGA	2 cut(s)	298, 997
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	1079
BseGI	GGATG	3 cut(s)	183, 822, 1006
BseJI	GATNNNNATC	2 cut(s)	300, 1070
BseLI	CCNNNNNNNGG	2 cut(s)	305, 997
BseMII	CTCAG	2 cut(s)	884, 920
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	39, 343
BseYI	CCCAGC	2 cut(s)	102, 196
Bsh1236I	CGCG	2 cut(s)	796, 1056
BshFI	GGCC	5 cut(s)	101, 219, 436, 513, 1014
BshTI	ACCGGT	1 cut(s)	1097
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	8 cut(s)	299, 305, 437, 449, 509, 821, 998, 1098
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	2 cut(s)	305, 997
BsmAI	GTCTC	4 cut(s)	402, 407, 881, 911
BsmFI	GGGAC	1 cut(s)	974
BsnI	GGCC	5 cut(s)	101, 219, 436, 513, 1014
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	591
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp13I	TCCGGA	2 cut(s)	298, 997
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	4 cut(s)	479, 602, 794, 1011
BspANI	GGCC	5 cut(s)	101, 219, 436, 513, 1014
BspCNI	CTCAG	2 cut(s)	885, 919
BspEI	TCCGGA	2 cut(s)	298, 997
BspFNI	CGCG	2 cut(s)	796, 1056
BspHI	TCATGA	3 cut(s)	420, 628, 844
BspLI	GGNNCC	7 cut(s)	7, 255, 297, 303, 513, 562, 1096
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	5 cut(s)	290, 296, 303, 309, 1091
BspTNI	GGTCTC	1 cut(s)	911
BsrFI	RCCGGY	3 cut(s)	448, 820, 1097
BssAI	RCCGGY	3 cut(s)	448, 820, 1097
BssECI	CCNNGG	1 cut(s)	1079
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	66, 418, 784
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	384, 767, 822, 1058
BstDEI	CTNAG	2 cut(s)	893, 906
BstDSI	CCRYGG	1 cut(s)	1079
BstF5I	GGATG	3 cut(s)	183, 822, 1006
BstFNI	CGCG	2 cut(s)	796, 1056
BstHHI	GCGC	1 cut(s)	798
BstMAI	GTCTC	4 cut(s)	402, 407, 881, 911
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 529, 567
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	3 cut(s)	249, 304, 508
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	2 cut(s)	796, 1056
BstV1I	GCAGC	2 cut(s)	39, 343
BstX2I	RGATCY	2 cut(s)	295, 301
BstYI	RGATCY	2 cut(s)	295, 301
BsuRI	GGCC	5 cut(s)	101, 219, 436, 513, 1014
BtgI	CCRYGG	1 cut(s)	1079
BtsCI	GGATG	3 cut(s)	183, 822, 1006
BtsIMutI	CAGTG	3 cut(s)	62, 890, 914
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	384, 767, 822, 1058
CaiI	CAGNNNCTG	1 cut(s)	868
CciI	TCATGA	3 cut(s)	420, 628, 844
CfoI	GCGC	1 cut(s)	798
Cfr10I	RCCGGY	3 cut(s)	448, 820, 1097
Cfr13I	GGNCC	7 cut(s)	100, 153, 253, 511, 512, 1013, 1095
CseI	GACGC	2 cut(s)	199, 337
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	1097
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	2 cut(s)	893, 906
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	1079
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	3 cut(s)	153, 253, 1095
Eco88I	CYCGRG	1 cut(s)	591
EcoO109I	RGGNCCY	2 cut(s)	153, 253
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	1079
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	1079
FaqI	GGGAC	1 cut(s)	974
FauI	CCCGC	1 cut(s)	609
FbaI	TGATCA	3 cut(s)	160, 832, 961
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	53, 332, 794, 1012
FokI	GGATG	3 cut(s)	190, 829, 1013
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	53, 332, 794, 1012
FspBI	CTAG	5 cut(s)	348, 756, 900, 1046, 1108
GlaI	GCGC	1 cut(s)	797
GluI	GCNGC	4 cut(s)	53, 332, 794, 1012
GsaI	CCCAGC	2 cut(s)	106, 200
HaeIII	GGCC	5 cut(s)	101, 219, 436, 513, 1014
HapII	CCGG	8 cut(s)	299, 305, 437, 449, 509, 821, 998, 1098
HgaI	GACGC	2 cut(s)	199, 337
HhaI	GCGC	1 cut(s)	798
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	796
HinP1I	GCGC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	440, 620, 973
HpaII	CCGG	8 cut(s)	299, 305, 437, 449, 509, 821, 998, 1098
HphI	GGTGA	4 cut(s)	482, 796, 827, 883
Hpy166II	GTNNAC	3 cut(s)	454, 541, 655
Hpy188I	TCNGA	2 cut(s)	412, 810
Hpy8I	GTNNAC	3 cut(s)	454, 541, 655
Hpy99I	CGWCG	1 cut(s)	1066
HpyAV	CCTTC	4 cut(s)	369, 418, 849, 868
HpyCH4III	ACNGT	3 cut(s)	66, 418, 784
HpyCH4V	TGCA	2 cut(s)	503, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 529, 567
HpyF3I	CTNAG	2 cut(s)	893, 906
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	1 cut(s)	796
Kpn2I	TCCGGA	2 cut(s)	298, 997
KroI	GCCGGC	1 cut(s)	820
KroNI	GCCGGC	1 cut(s)	822
Ksp22I	TGATCA	3 cut(s)	160, 832, 961
LmnI	GCTCC	3 cut(s)	5, 566, 1024
Lsp1109I	GCAGC	2 cut(s)	39, 343
LweI	GCATC	2 cut(s)	271, 807
MaeI	CTAG	5 cut(s)	348, 756, 900, 1046, 1108
MaeIII	GTNAC	4 cut(s)	211, 227, 325, 1100
MboII	GAAGA	5 cut(s)	30, 37, 193, 589, 1021
MfeI	CAATTG	1 cut(s)	584
MflI	RGATCY	2 cut(s)	295, 301
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	4 cut(s)	473, 504, 584, 719
MlyI	GAGTC	2 cut(s)	614, 967
MnlI	CCTC	6 cut(s)	19, 313, 690, 871, 888, 915
MroI	TCCGGA	2 cut(s)	298, 997
MroNI	GCCGGC	1 cut(s)	820
MslI	CAYNNNNRTG	4 cut(s)	67, 633, 677, 729
MspI	CCGG	8 cut(s)	299, 305, 437, 449, 509, 821, 998, 1098
MspR9I	CCNGG	3 cut(s)	251, 306, 510
MunI	CAATTG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	796, 1056
MwoI	GCNNNNNNNGC	3 cut(s)	216, 529, 567
NaeI	GCCGGC	1 cut(s)	822
NciI	CCSGG	2 cut(s)	306, 510
NcoI	CCATGG	1 cut(s)	1079
NgoMIV	GCCGGC	1 cut(s)	820
NlaIV	GGNNCC	7 cut(s)	7, 255, 297, 303, 513, 562, 1096
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	211, 325
NspI	RCATGY	1 cut(s)	755
PagI	TCATGA	3 cut(s)	420, 628, 844
PdiI	GCCGGC	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	440
PinAI	ACCGGT	1 cut(s)	1097
PkrI	GCNGC	4 cut(s)	54, 333, 795, 1013
PleI	GAGTC	2 cut(s)	614, 967
PpsI	GAGTC	2 cut(s)	614, 967
PpuMI	RGGWCCY	2 cut(s)	153, 253
Psp5II	RGGWCCY	2 cut(s)	153, 253
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	102, 196
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	7 cut(s)	7, 255, 297, 303, 513, 562, 1096
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	7 cut(s)	100, 153, 253, 511, 512, 1013, 1095
PspPPI	RGGWCCY	2 cut(s)	153, 253
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	2 cut(s)	295, 301
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	4 cut(s)	67, 633, 677, 729
SatI	GCNGC	4 cut(s)	53, 332, 794, 1012
Sau96I	GGNCC	7 cut(s)	100, 153, 253, 511, 512, 1013, 1095
SchI	GAGTC	2 cut(s)	614, 967
ScrFI	CCNGG	3 cut(s)	251, 306, 510
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	271, 807
SinI	GGWCC	3 cut(s)	153, 253, 1095
SmiMI	CAYNNNNRTG	4 cut(s)	67, 633, 677, 729
Sse9I	AATT	4 cut(s)	473, 504, 584, 719
SsiI	CCGC	4 cut(s)	479, 602, 794, 1011
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	5 cut(s)	348, 756, 900, 1046, 1108
StyD4I	CCNGG	3 cut(s)	249, 304, 508
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	3 cut(s)	66, 418, 784
TaqI	TCGA	4 cut(s)	239, 618, 789, 804
TasI	AATT	4 cut(s)	473, 504, 584, 719
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	2 cut(s)	796, 1014
TfiI	GAWTC	1 cut(s)	440
TscAI	CASTG	3 cut(s)	69, 897, 914
TseFI	GTSAC	2 cut(s)	211, 325
TseI	GCWGC	2 cut(s)	52, 331
Tsp45I	GTSAC	2 cut(s)	211, 325
TspDTI	ATGAA	5 cut(s)	30, 194, 437, 617, 713
TspGWI	ACGGA	2 cut(s)	253, 290
TspRI	CASTG	3 cut(s)	69, 897, 914
VpaK11BI	GGWCC	3 cut(s)	153, 253, 1095
XapI	RAATTY	2 cut(s)	473, 719
XceI	RCATGY	1 cut(s)	755
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	5 cut(s)	348, 756, 900, 1046, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.