Rmu_sc0015029.1_g000005

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015029.1
OG0017667
Physical Location & Seq
Reverse (-)
21370 .. 22284
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015029.1_g000005.1.cds

Sequence Viewer

Length: 615 bp
atgactagtctccggtcctgtttcgtcatagtcatgattgttctcaacctaggcatggctgccgccggtctctctcttaagcgtggttggcagcatgctactgcaacgttttacggcgacatgaatggtgatgaaaccttgcgcgcaatccgggtcacagctaccaactattgccctccaagctacgatgaggaagctccttggtgcaacctgcctcgcaagcactttgatctatccatgcctatgttcttgaacattgcagaatacaaagcaggaattgtcccggttatctatcgccgagttaagtgccgcaagagtggtggtatcaagttcgtgtttaagggaaatcaaggttggttgcttgtgctagtgtacaatgttggtggtgctggacaggttgttgatgtgaagataaagggttcacagactggttggatacaaatggaacgtaattggggcgtaaactggcaggtatcggatgataccgtgcagaagttacaggggcagagcttgtctttccaagttaccgcaagggatggtagaatggtgcagtccgacaatgtcgccccgaggaattggcaattgggggagacatatgagggaagaaacttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

204

Amino Acids

22.95

Weight (kDa)

9.36

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017667)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17040
rosa_chinensis RchiOBHm_Chr7g0178811
rosa_laevigata RLG00000005414
rosa_multiflora Rmu_sc0015029.1_g000005 Rmu_sc0025325.1_g000006
rosa_roxburghii Rroxscaffold_3G00274590
rosa_rugosa Rorug06G0419900
rosa_samantha Rh7AG019200 Rh7BG018500 Rh7CG019300 Rh7DG019100
rosa_wichuraiana Rw7G001560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 219, 460
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 63, 310, 528
AclI AACGTT 1 cut(s) 107
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 55
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 253
AhlI ACTAGT 1 cut(s) 5
AjuI GAANNNNNNNTTGG 4 cut(s) 337, 369, 566, 598
AluBI AGCT 4 cut(s) 161, 183, 197, 510
AluI AGCT 4 cut(s) 161, 183, 197, 510
Alw26I GTCTC 3 cut(s) 14, 74, 584
Ama87I CYCGRG 1 cut(s) 568
ApeKI GCWGC 2 cut(s) 59, 91
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 2 cut(s) 144, 146
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 2 cut(s) 152, 284
AsuHPI GGTGA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 15
AvrII CCTAGG 1 cut(s) 49
BbvI GCAGC 2 cut(s) 46, 103
BccI CCATC 1 cut(s) 530
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciVI GTATCC 1 cut(s) 429
BcnI CCSGG 2 cut(s) 152, 284
BcoDI GTCTC 3 cut(s) 14, 74, 584
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 4 cut(s) 6, 50, 368, 613
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 2 cut(s) 219, 460
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 4 cut(s) 60, 63, 92, 310
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 4 cut(s) 61, 64, 93, 311
Bme1390I CCNGG 2 cut(s) 152, 284
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 152, 284
BpuMI CCSGG 2 cut(s) 152, 284
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 49, 200, 569
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 433, 470
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 49, 200, 569
BseGI GGATG 2 cut(s) 484, 541
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 433, 470
BsePI GCGCGC 1 cut(s) 142
BseXI GCAGC 2 cut(s) 46, 103
BsgI GTGCAG 2 cut(s) 509, 569
Bsh1236I CGCG 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 4 cut(s) 13, 66, 151, 284
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 3 cut(s) 14, 74, 584
BsmFI GGGAC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 3 cut(s) 63, 310, 528
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 33
BspMI ACCTGC 2 cut(s) 219, 460
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 2 cut(s) 433, 470
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 49, 200, 569
BssHII GCGCGC 1 cut(s) 142
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 2 cut(s) 49, 200
Bst4CI ACNGT 1 cut(s) 487
BstAFI CTTAAG 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 96, 144, 221
BstF5I GGATG 2 cut(s) 484, 541
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 144, 146
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 3 cut(s) 14, 74, 584
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 88, 180, 220
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 150, 282
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 46, 103
BsuI GTATCC 1 cut(s) 429
BtsCI GGATG 2 cut(s) 484, 541
BveI ACCTGC 2 cut(s) 219, 460
Cac8I GCNNGC 3 cut(s) 96, 144, 221
CciI TCATGA 1 cut(s) 33
CfoI GCGC 2 cut(s) 144, 146
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 4 cut(s) 301, 336, 364, 399
CviAII CATG 5 cut(s) 34, 55, 95, 121, 238
CviJI RGCY 5 cut(s) 59, 161, 183, 197, 510
CviKI_1 RGCY 5 cut(s) 59, 161, 183, 197, 510
CviQI GTAC 1 cut(s) 373
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 49, 200
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 49, 200
ErhI CCWWGG 2 cut(s) 49, 200
FaeI CATG 5 cut(s) 37, 58, 98, 124, 241
FaiI YATR 9 cut(s) 29, 35, 56, 96, 122, 239, 245, 595, 597
FaqI GGGAC 1 cut(s) 266
FatI CATG 5 cut(s) 33, 54, 94, 120, 237
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 4 cut(s) 60, 63, 92, 310
FokI GGATG 2 cut(s) 491, 548
Fsp4HI GCNGC 4 cut(s) 60, 63, 92, 310
FspBI CTAG 4 cut(s) 6, 50, 368, 613
GlaI GCGC 2 cut(s) 143, 145
GluI GCNGC 4 cut(s) 60, 63, 92, 310
HapII CCGG 4 cut(s) 13, 66, 151, 284
HhaI GCGC 2 cut(s) 144, 146
Hin1II CATG 5 cut(s) 37, 58, 98, 124, 241
Hin6I GCGC 2 cut(s) 142, 144
HinP1I GCGC 2 cut(s) 142, 144
HpaII CCGG 4 cut(s) 13, 66, 151, 284
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 373, 422, 463
Hpy188I TCNGA 2 cut(s) 478, 556
Hpy188III TCNNGA 2 cut(s) 34, 250
Hpy8I GTNNAC 3 cut(s) 373, 422, 463
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 107, 448
HpyCH4V TGCA 5 cut(s) 104, 207, 260, 490, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 180, 220
HpySE526I ACGT 2 cut(s) 107, 448
Hsp92II CATG 5 cut(s) 37, 58, 98, 124, 241
HspAI GCGC 2 cut(s) 142, 144
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 2 cut(s) 46, 103
MaeI CTAG 4 cut(s) 6, 50, 368, 613
MaeII ACGT 2 cut(s) 107, 448
MaeIII GTNAC 3 cut(s) 154, 495, 523
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 421, 615
MfeI CAATTG 1 cut(s) 581
MluCI AATT 4 cut(s) 276, 451, 574, 581
MmeI TCCRAC 2 cut(s) 413, 579
MnlI CCTC 5 cut(s) 184, 186, 225, 564, 592
MseI TTAA 3 cut(s) 78, 303, 339
MslI CAYNNNNRTG 2 cut(s) 32, 242
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 4 cut(s) 13, 66, 151, 284
MspR9I CCNGG 2 cut(s) 152, 284
MunI CAATTG 1 cut(s) 581
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 88, 180, 220
NciI CCSGG 2 cut(s) 152, 284
NdeI CATATG 1 cut(s) 595
NdeII GATC 1 cut(s) 229
NlaIII CATG 5 cut(s) 37, 58, 98, 124, 241
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PagI TCATGA 1 cut(s) 33
PauI GCGCGC 1 cut(s) 142
PflFI GACNNNGTC 1 cut(s) 560
PkrI GCNGC 4 cut(s) 61, 64, 93, 311
Psp1406I AACGTT 1 cut(s) 107
PspPI GGNCC 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 560
PteI GCGCGC 1 cut(s) 142
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 2 cut(s) 32, 242
SaqAI TTAA 3 cut(s) 78, 303, 339
SatI GCNGC 4 cut(s) 60, 63, 92, 310
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 152, 284
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 32, 242
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 5
SphI GCATGC 1 cut(s) 98
Sse9I AATT 4 cut(s) 276, 451, 574, 581
SsiI CCGC 3 cut(s) 63, 310, 528
SspMI CTAG 4 cut(s) 6, 50, 368, 613
StyD4I CCNGG 2 cut(s) 150, 282
StyI CCWWGG 2 cut(s) 49, 200
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 110, 451
TasI AATT 4 cut(s) 276, 451, 574, 581
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 65, 312
Tru1I TTAA 3 cut(s) 78, 303, 339
Tru9I TTAA 3 cut(s) 78, 303, 339
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 59, 91
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 137, 147
Tth111I GACNNNGTC 1 cut(s) 560
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 4 cut(s) 6, 50, 368, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.