Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017585.1

Orthogroup ID

OG0008154

Physical Location & Seq

Genomic Coordinates Reverse (-)

1294 .. 3650

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

atgctgcagaggcttccaccaaagtttgtgacgaaatttgggaaagaattgtccgatgttgctatactgactgttcccactggccgtgtttggcaagtgggtttggaaagagttgacaaaagaatttggtttgttaaagattggcaggcttttgcagaatactattctctccgttatggggacttcctagaatttagatatgaagggaattcaaatttccgcgttttaatatttgatatgacttgttctgagattgcctaccctcgtcaagagcaaagttctgatttgcattctatggggattcatgaagaggatatggaaaatgatggtgtttgtgacactttaggtaccacaactcctctttctcatgcttcaatgaaaagaaaatgcaaatgtctagacaaacatgttcttgaaagaagacatgttttgcactctggctcgaatcttaacaaaagtatcaaaagaggtgttactagcaaggagaatatgctatatcagtctgacaatgagacgaggagaaagaagactagatatgtagatgaaggagacacaatcaactcaagtagtgtgacgaaatcagcgccagctagtttgaaggaaaatagaatgccaagctctctggaattattaacaaaacagaacgatgataagaaagtgatccaggctactagaatgttcaagctgaaaaatccttttttctcaattatcttgcagccatttaacttcacttattgctatttgcatgtgcctactgactttgctgagaaatatttgagtgggtgttcagaatccatcaaacttcagggttctcatggaaagcagtgggatgttcgatttgtgtctacaaatccttcacttccgataatatgcaggggttgcattcagtttttgacagacaacaatttggaagagggagatgtctgtctttttgagctgatgaagagcaaggctgacgtcgttctaaaagtttcaatacttcgtgcagctgaatatgaagacacaatagacgcaagtaatgtgaagaaatcaaagcgggccaaactgaatcagaatagaatgtgtggctcacaggatttctccacaggacagaacaaagatgatggaatgtttgcttttgacattttttctcacacttatcctaaatggaaacttaagtttcccaaagagactgagaaggtgacctatgctaccagaatgttcaatctgaaaaatccttttttcgctgtcatcttgcagttcaataactaccatctgttaattcctgttccctttgctaggagatatttgagtagcggcgcagaatttatcaaactacaggattccaatggtggccaatgggatgtccaatgcagttctacaaatgcttcaagttcagtccttaggttcggcaggggatacaatgtatttttgacagacaagaatttggaacaaggagatgtatgtctctttgagctgataaaaaggaatgatgttttgctaaaagtttcagcactccgtgcttctgaatatgaagacatggtccatgataaagagaagaaacttgatgagattaagaacagaagttatagaaatggacatgaggaagagataccagagctagttgggagacttaatgaaaagggaaagtctccctcacacaagttgtctgcagaagatgaaggaaacacagaattttgcaatagtggaactttgtattattcttctaagatagaaaagacagtgatgtccaaagaaagcaggagggcgtttaatgctgccaaaaagttcaagacagaaaatcctgccttccttgtattcttgcgacattatcacaagtcttttttggtagtgcctgctgaatttgatactaagcatctggggtatgaatgcccaatattcattacacttgaggcgcctaatggaaagcggtgtcatgttcgctgcatttatgctactgataggaaaaaaatatctggtggatggagtgcattcttctcagaaaataatttggaagaaggggatgtttgtgtatttgagctgattgcaagtaaagatgttgtgctgaaggcttcaatatttcgtgcagcagaatttgcggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

694

Amino Acids

79.61

Weight (kDa)

8.66

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610
rosa_chinensis	RchiOBHm_Chr1g0343041
rosa_laevigata	RLG00000029200
rosa_multiflora	Rmu_sc0017585.1_g000001 Rmu_sc0038366.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313300
rosa_rugosa	Rorug01G0144500.1 Rorug01G0144600.1
rosa_samantha	Rh1AG161000 Rh1BG128200 Rh1CG150500 Rh1DG164500
rosa_wichuraiana	Rw1G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1726
AatII	GACGTC	1 cut(s)	960
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	347, 1894
AccI	GTMKAC	1 cut(s)	845
AccII	CGCG	1 cut(s)	222
AciI	CCGC	5 cut(s)	220, 1036, 1296, 1909, 2078
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	2 cut(s)	82, 1333
AcuI	CTGAAG	2 cut(s)	788, 2066
AcyI	GRCGYC	2 cut(s)	957, 1895
AdeI	CACNNNGTG	1 cut(s)	1499
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	178, 1278
AflII	CTTAAG	1 cut(s)	1154
AflIII	ACRYGT	2 cut(s)	406, 424
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	8 cut(s)	590, 618, 685, 937, 989, 1456, 1600, 2020
AluI	AGCT	8 cut(s)	590, 618, 685, 937, 989, 1456, 1600, 2020
Alw26I	GTCTC	6 cut(s)	506, 543, 1163, 1451, 1603, 1635
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	3 cut(s)	82, 1038, 1333
ApeKI	GCWGC	6 cut(s)	4, 715, 986, 1757, 1923, 2066
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	586, 1301, 1897
AspS9I	GGNCC	2 cut(s)	1038, 1522
AsuHPI	GGTGA	1 cut(s)	1192
AvaII	GGWCC	1 cut(s)	1522
AxyI	CCTNAGG	1 cut(s)	1382
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BalI	TGGCCA	1 cut(s)	1335
BanI	GGYRCC	2 cut(s)	347, 1894
BbsI	GAAGAC	4 cut(s)	427, 533, 1005, 1521
BbvI	GCAGC	5 cut(s)	727, 998, 1744, 1910, 2078
BccI	CCATC	5 cut(s)	320, 803, 1097, 1260, 1956
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	1391
BcoDI	GTCTC	6 cut(s)	506, 543, 1163, 1451, 1603, 1635
BfaI	CTAG	9 cut(s)	188, 398, 477, 531, 591, 672, 1278, 1601, 2083
BfmI	CTRYAG	3 cut(s)	5, 1316, 1650
BfoI	RGCGCY	2 cut(s)	587, 1898
BfrI	CTTAAG	1 cut(s)	1154
BfuI	GTATCC	1 cut(s)	1391
BisI	GCNGC	7 cut(s)	5, 716, 987, 1297, 1758, 1924, 2067
BlsI	GCNGC	7 cut(s)	6, 717, 988, 1298, 1759, 1925, 2068
Bme1390I	CCNGG	1 cut(s)	665
Bme18I	GGWCC	1 cut(s)	1522
BmgT120I	GGNCC	2 cut(s)	1038, 1522
BmiI	GGNNCC	2 cut(s)	349, 1896
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	1864
BpiI	GAAGAC	4 cut(s)	427, 533, 1005, 1521
BpuEI	CTTGAG	2 cut(s)	547, 1910
BsaHI	GRCGYC	2 cut(s)	957, 1895
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 1278
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	1382
BseBI	CCWGG	1 cut(s)	665
BseGI	GGATG	4 cut(s)	835, 1348, 1967, 2008
BseLI	CCNNNNNNNGG	2 cut(s)	178, 1278
BseMII	CTCAG	4 cut(s)	240, 756, 1164, 1992
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	348, 532
BseXI	GCAGC	5 cut(s)	727, 998, 1744, 1910, 2078
BsgI	GTGCAG	2 cut(s)	1005, 2085
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	84, 1040, 1335
BshNI	GGYRCC	2 cut(s)	347, 1894
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	178, 1278
BsmAI	GTCTC	6 cut(s)	506, 543, 1163, 1451, 1603, 1635
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	5 cut(s)	289, 615, 882, 1874, 1970
BsnI	GGCC	3 cut(s)	84, 1040, 1335
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	5 cut(s)	220, 1036, 1296, 1909, 2078
BspANI	GGCC	3 cut(s)	84, 1040, 1335
BspCNI	CTCAG	4 cut(s)	241, 757, 1165, 1991
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	349, 1896
BspMAI	CTGCAG	2 cut(s)	9, 1654
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	938
BspT107I	GGYRCC	2 cut(s)	347, 1894
BspTI	CTTAAG	1 cut(s)	1154
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	660
BssNI	GRCGYC	2 cut(s)	957, 1895
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	73, 1723
Bst6I	CTCTTC	4 cut(s)	303, 906, 938, 1581
BstACI	GRCGYC	2 cut(s)	957, 1895
BstAFI	CTTAAG	1 cut(s)	1154
BstAPI	GCANNNNNTGC	3 cut(s)	879, 1499, 2075
BstC8I	GCNNGC	4 cut(s)	147, 588, 1038, 1836
BstDEI	CTNAG	7 cut(s)	249, 765, 1173, 1382, 1707, 1851, 1978
BstEII	GGTNACC	1 cut(s)	1180
BstENI	CCTNNNNNAGG	1 cut(s)	1276
BstF5I	GGATG	4 cut(s)	835, 1348, 1967, 2008
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	2 cut(s)	587, 1898
BstHHI	GCGC	3 cut(s)	586, 1301, 1897
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	6 cut(s)	506, 543, 1163, 1451, 1603, 1635
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 879, 1499, 1754, 2075
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	3 cut(s)	410, 428, 749
BstPI	GGTNACC	1 cut(s)	1180
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	3 cut(s)	5, 1316, 1650
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	727, 998, 1744, 1910, 2078
BstV2I	GAAGAC	4 cut(s)	427, 533, 1005, 1521
Bsu36I	CCTNAGG	1 cut(s)	1382
BsuI	GTATCC	1 cut(s)	1391
BsuRI	GGCC	3 cut(s)	84, 1040, 1335
BtsCI	GGATG	4 cut(s)	835, 1348, 1967, 2008
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	78, 830, 1728
Cac8I	GCNNGC	4 cut(s)	147, 588, 1038, 1836
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	3 cut(s)	586, 1301, 1897
Cfr13I	GGNCC	2 cut(s)	1038, 1522
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	1 cut(s)	348
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	7 cut(s)	249, 765, 1173, 1382, 1707, 1851, 1978
DinI	GGCGCC	1 cut(s)	1896
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DraIII	CACNNNGTG	1 cut(s)	1499
DrdI	GACNNNNNNGTC	1 cut(s)	1726
DseDI	GACNNNNNNGTC	1 cut(s)	1726
EaeI	YGGCCR	2 cut(s)	82, 1333
Eam1104I	CTCTTC	4 cut(s)	303, 906, 938, 1581
EarI	CTCTTC	4 cut(s)	303, 906, 938, 1581
Eco47I	GGWCC	1 cut(s)	1522
Eco57I	CTGAAG	2 cut(s)	788, 2066
Eco81I	CCTNAGG	1 cut(s)	1382
Eco91I	GGTNACC	1 cut(s)	1180
EcoNI	CCTNNNNNAGG	1 cut(s)	1276
EcoO65I	GGTNACC	1 cut(s)	1180
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	663
EgeI	GGCGCC	1 cut(s)	1896
EheI	GGCGCC	1 cut(s)	1896
Esp3I	CGTCTC	1 cut(s)	506
FaqI	GGGAC	1 cut(s)	194
FauI	CCCGC	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	7 cut(s)	5, 716, 987, 1297, 1758, 1924, 2067
FokI	GGATG	4 cut(s)	842, 1355, 1974, 2015
Fsp4HI	GCNGC	7 cut(s)	5, 716, 987, 1297, 1758, 1924, 2067
FspBI	CTAG	9 cut(s)	188, 398, 477, 531, 591, 672, 1278, 1601, 2083
GlaI	GCGC	3 cut(s)	585, 1300, 1896
GluI	GCNGC	7 cut(s)	5, 716, 987, 1297, 1758, 1924, 2067
HaeII	RGCGCY	2 cut(s)	587, 1898
HaeIII	GGCC	3 cut(s)	84, 1040, 1335
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	3 cut(s)	586, 1301, 1897
Hin1I	GRCGYC	2 cut(s)	957, 1895
Hin6I	GCGC	3 cut(s)	584, 1299, 1895
HinP1I	GCGC	3 cut(s)	584, 1299, 1895
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	5 cut(s)	301, 445, 791, 1048, 1322
HphI	GGTGA	1 cut(s)	1192
Hpy166II	GTNNAC	2 cut(s)	115, 846
Hpy188III	TCNNGA	6 cut(s)	269, 305, 398, 413, 623, 1771
Hpy8I	GTNNAC	2 cut(s)	115, 846
Hpy99I	CGWCG	1 cut(s)	962
HpyAV	CCTTC	9 cut(s)	197, 539, 592, 864, 1171, 1655, 1798, 1991, 2041
HpyCH4III	ACNGT	2 cut(s)	73, 1723
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 879, 1499, 1754, 2075
HpyF3I	CTNAG	7 cut(s)	249, 765, 1173, 1382, 1707, 1851, 1978
HpySE526I	ACGT	1 cut(s)	957
Hsp92I	GRCGYC	2 cut(s)	957, 1895
HspAI	GCGC	3 cut(s)	584, 1299, 1895
KasI	GGCGCC	1 cut(s)	1894
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	660
LguI	GCTCTTC	1 cut(s)	938
Lsp1109I	GCAGC	5 cut(s)	727, 998, 1744, 1910, 2078
LweI	GCATC	1 cut(s)	1864
MaeI	CTAG	9 cut(s)	188, 398, 477, 531, 591, 672, 1278, 1601, 2083
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	5 cut(s)	28, 335, 472, 571, 1180
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MlsI	TGGCCA	1 cut(s)	1335
MluNI	TGGCCA	1 cut(s)	1335
Mly113I	GGCGCC	1 cut(s)	1895
Mox20I	TGGCCA	1 cut(s)	1335
MscI	TGGCCA	1 cut(s)	1335
Msp20I	TGGCCA	1 cut(s)	1335
MspA1I	CMGCKG	1 cut(s)	989
MspCI	CTTAAG	1 cut(s)	1154
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	5 cut(s)	289, 615, 882, 1874, 1970
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	10, 879, 1499, 1754, 2075
NarI	GGCGCC	1 cut(s)	1895
NdeII	GATC	1 cut(s)	660
NlaIV	GGNNCC	2 cut(s)	349, 1896
NmuCI	GTSAC	4 cut(s)	28, 335, 571, 1180
NspI	RCATGY	3 cut(s)	410, 428, 749
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	2 cut(s)	406, 424
PciSI	GCTCTTC	1 cut(s)	938
PctI	GAATGC	5 cut(s)	289, 615, 882, 1874, 1970
PfeI	GAWTC	5 cut(s)	301, 445, 791, 1048, 1322
PflFI	GACNNNGTC	1 cut(s)	1520
PkrI	GCNGC	7 cut(s)	6, 717, 988, 1298, 1759, 1925, 2068
PluTI	GGCGCC	1 cut(s)	1898
PscI	ACATGT	2 cut(s)	406, 424
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	1180
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	349, 1896
PspPI	GGNCC	2 cut(s)	1038, 1522
PstI	CTGCAG	2 cut(s)	9, 1654
PsyI	GACNNNGTC	1 cut(s)	1520
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	938
SatI	GCNGC	7 cut(s)	5, 716, 987, 1297, 1758, 1924, 2067
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	2 cut(s)	1038, 1522
ScrFI	CCNGG	1 cut(s)	665
SfaNI	GCATC	1 cut(s)	1864
SfcI	CTRYAG	3 cut(s)	5, 1316, 1650
SfoI	GGCGCC	1 cut(s)	1896
SinI	GGWCC	1 cut(s)	1522
SmlI	CTYRAG	3 cut(s)	562, 1154, 1889
SmoI	CTYRAG	3 cut(s)	562, 1154, 1889
SsiI	CCGC	5 cut(s)	220, 1036, 1296, 1909, 2078
SspDI	GGCGCC	1 cut(s)	1894
SspI	AATATT	4 cut(s)	231, 773, 1878, 2058
SspMI	CTAG	9 cut(s)	188, 398, 477, 531, 591, 672, 1278, 1601, 2083
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	73, 1723
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	443, 835
TauI	GCSGC	1 cut(s)	1299
TfiI	GAWTC	5 cut(s)	301, 445, 791, 1048, 1322
TscAI	CASTG	3 cut(s)	85, 830, 1728
TseFI	GTSAC	4 cut(s)	28, 335, 571, 1180
TseI	GCWGC	6 cut(s)	4, 715, 986, 1757, 1923, 2066
Tsp45I	GTSAC	4 cut(s)	28, 335, 571, 1180
TspGWI	ACGGA	2 cut(s)	161, 1487
TspRI	CASTG	3 cut(s)	85, 830, 1728
Tth111I	GACNNNGTC	1 cut(s)	1520
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	1 cut(s)	1522
XagI	CCTNNNNNAGG	1 cut(s)	1276
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	3 cut(s)	410, 428, 749
XmiI	GTMKAC	1 cut(s)	845
XspI	CTAG	9 cut(s)	188, 398, 477, 531, 591, 672, 1278, 1601, 2083
ZraI	GACGTC	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.