Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038366.1

Orthogroup ID

OG0008154

Physical Location & Seq

Genomic Coordinates Forward (+)

635 .. 3356

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

atgctgcagaggcttccaccaaagtttgtgacgaaatttgggaaagaattgtccgatgttgctatactgactgttcccactggccgtgtttggcaagtgggtttggaaagagttgacaaaagaatttggtttgttaaagattggcaggcttttgcagaatactattctctccgttatggggacttcctagaatttagatatgaagggaattcaaatttccgcgttttaatatttgatatgacttgttctgagattgcctaccctcgtcaagagcaaagttctgatttgcattctatggggattcatgaagaggatatggaaaatgatggtgtttgtgacactttaggtaccacaactcctctttctcatgcttcaatgaaaagaaaatgcaaatgtctagacaaacatgttcttgaaagaagacatgttttgcactctggctcgaatcttaacaaaagtatcaaaagaggtgttactagcaaggagaatatgctatatcagtctgacaatgagacgaggagaaagaagactagatatgtagatgaaggagacacaatcaactcaagtagtgtgacgaagtcagcgccagctagtttgaaggaaaatagaatgccaagctctctggaattattaacaaaacagaacgatgataagaaagtgatccaggctactagaatgttcaagctgaaaaatccttttttctcaattatcttgcagccatttaacttcacttattgctatttgcatgtgcctactgactttgctgagaaatatttgagtgggtgttcagaatccatcaaacttcagggttctcatggaaagcagtgggatgttcgatttgtgtctacaaatccttcacttccgataatatgcaggggttgcattcagtttttgacagacaacaatttggaatatggagatgtctgtctttttgagctgatgaagagcaaggctgacgtcgttctaaaagtttcaatacttcgtacagctgaatatgaagacacaatagactcaagtaatgtgaagaaatcaaagcgggccaagctgaatcagaatagaatgtgtggctcacaggatttctccgcaggacagaacaaagatgatggaatgtttgcttttgacattttttctcacacttatcctaaatggaaacttaagtttcccaaagagactgagaaggtgacctatgctaccagaatgttcaatctgaaaaatccttttttcgctgtcatcttgcagttcaataactaccatctgttaattcctgttccctttgctaggagatatttgagtagcggcgcagaatttatcaaactacaggattccaatggtggccaatgggatgtccaatgcagttctacaaatgcttcaagttcagtccttaggttcggcaggggatacaatgtatttttgacagacaagaatttggaacaaggagatgtatgtctctttgagctgataaaaaggaatgatgttttgctaaaagtttcagtcctccgtgcttctgaatatgaagacatggtccatgataaagagaagaaacttgatgagatgaagagcagaagttatagaaatggacacgaggaagagataccagagctagttgggagacttaatgaaaagggaaagtctccctcacacaagttgtctgcggaagatgaaggaaacacagaattttgcaatagtggaactttgtattattcttctaagatagaaaagacagtgatgtccaaagaaagcaggagggcgtttaatgctgccaaaaagttcaagacagaaaatcctgccttccttgtattcttgcgacattatcacaagtcttttttggaagagataccagagctagttgggagacttaatgaaaagggaaagtctccctcacacaagttgtctgcggaagatgaaggaaacacagaattttgcaatagtggaactttgtattattcttctaagatagaaaagacagtgatgtccaaagaaagcaggagggcgtttaatgctgccaaaaagttcaagacagaaaatcctgccttccttgtattcttgcgacattatcacaagtcttttttggtagtgcctgctgaatttgatactaagcatctggggtatgaatgcccaatattcattacacttgaggcgcctaatggaaagcggtgtcatgttcgctgcatttatgctactgataggaaaaaaatatctggtggatggagtgcattcttctcagaaaataatttggaagaaggggatgtttgtgtatttgagctgattgcaagtaaagatgttgtgctgaaggcttcaatatttcgtgcagcagaatttgcggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

775

Amino Acids

88.96

Weight (kDa)

8.81

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610 FvH4_7g07610
rosa_chinensis	RchiOBHm_Chr1g0343041
rosa_laevigata	RLG00000029200
rosa_multiflora	Rmu_sc0017585.1_g000001 Rmu_sc0038366.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313300
rosa_rugosa	Rorug01G0144500.1 Rorug01G0144600.1
rosa_samantha	Rh1AG161000 Rh1BG128200 Rh1CG150500 Rh1DG164500
rosa_wichuraiana	Rw1G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1726, 1969
AatII	GACGTC	1 cut(s)	960
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	347, 2137
AccI	GTMKAC	1 cut(s)	845
AccII	CGCG	1 cut(s)	222
AciI	CCGC	8 cut(s)	220, 1036, 1083, 1296, 1652, 1895, 2152, 2321
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	2 cut(s)	82, 1333
AcuI	CTGAAG	2 cut(s)	788, 2309
AcyI	GRCGYC	2 cut(s)	957, 2138
AfaI	GTAC	2 cut(s)	349, 985
AfiI	CCNNNNNNNGG	2 cut(s)	178, 1278
AflII	CTTAAG	1 cut(s)	1154
AflIII	ACRYGT	2 cut(s)	406, 424
AjnI	CCWGG	1 cut(s)	663
Alw26I	GTCTC	8 cut(s)	506, 543, 1163, 1451, 1603, 1635, 1846, 1878
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	3 cut(s)	82, 1038, 1333
ApeKI	GCWGC	6 cut(s)	4, 715, 1757, 2000, 2166, 2309
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	586, 1301, 2140
AspS9I	GGNCC	2 cut(s)	1038, 1522
AsuHPI	GGTGA	1 cut(s)	1192
AvaII	GGWCC	1 cut(s)	1522
AxyI	CCTNAGG	1 cut(s)	1382
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BalI	TGGCCA	1 cut(s)	1335
BanI	GGYRCC	2 cut(s)	347, 2137
BauI	CACGAG	1 cut(s)	1580
BbsI	GAAGAC	4 cut(s)	427, 533, 1005, 1521
BbvI	GCAGC	5 cut(s)	727, 1744, 1987, 2153, 2321
BccI	CCATC	5 cut(s)	320, 803, 1097, 1260, 2199
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	1391
BcoDI	GTCTC	8 cut(s)	506, 543, 1163, 1451, 1603, 1635, 1846, 1878
BfmI	CTRYAG	2 cut(s)	5, 1316
BfoI	RGCGCY	2 cut(s)	587, 2141
BfrI	CTTAAG	1 cut(s)	1154
BfuI	GTATCC	1 cut(s)	1391
BisI	GCNGC	7 cut(s)	5, 716, 1297, 1758, 2001, 2167, 2310
BlsI	GCNGC	7 cut(s)	6, 717, 1298, 1759, 2002, 2168, 2311
Bme1390I	CCNGG	1 cut(s)	665
Bme18I	GGWCC	1 cut(s)	1522
BmgT120I	GGNCC	2 cut(s)	1038, 1522
BmiI	GGNNCC	2 cut(s)	349, 2139
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	2107
BpiI	GAAGAC	4 cut(s)	427, 533, 1005, 1521
BpuEI	CTTGAG	3 cut(s)	547, 997, 2153
BsaHI	GRCGYC	2 cut(s)	957, 2138
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 1278
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	1382
BseBI	CCWGG	1 cut(s)	665
BseGI	GGATG	4 cut(s)	835, 1348, 2210, 2251
BseLI	CCNNNNNNNGG	2 cut(s)	178, 1278
BseMII	CTCAG	4 cut(s)	240, 756, 1164, 2235
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	348, 532
BseXI	GCAGC	5 cut(s)	727, 1744, 1987, 2153, 2321
BsgI	GTGCAG	1 cut(s)	2328
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	84, 1040, 1335
BshNI	GGYRCC	2 cut(s)	347, 2137
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	178, 1278
BsmAI	GTCTC	8 cut(s)	506, 543, 1163, 1451, 1603, 1635, 1846, 1878
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	5 cut(s)	289, 615, 882, 2117, 2213
BsnI	GGCC	3 cut(s)	84, 1040, 1335
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	8 cut(s)	220, 1036, 1083, 1296, 1652, 1895, 2152, 2321
BspANI	GGCC	3 cut(s)	84, 1040, 1335
BspCNI	CTCAG	4 cut(s)	241, 757, 1165, 2234
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	349, 2139
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	2 cut(s)	938, 1550
BspT107I	GGYRCC	2 cut(s)	347, 2137
BspTI	CTTAAG	1 cut(s)	1154
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	660
BssNI	GRCGYC	2 cut(s)	957, 2138
BssSI	CACGAG	1 cut(s)	1580
Bst2BI	CACGAG	1 cut(s)	1580
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	73, 1723, 1966
Bst6I	CTCTTC	5 cut(s)	303, 938, 1550, 1581, 1824
BstACI	GRCGYC	2 cut(s)	957, 2138
BstAFI	CTTAAG	1 cut(s)	1154
BstAPI	GCANNNNNTGC	2 cut(s)	879, 2318
BstC8I	GCNNGC	4 cut(s)	147, 588, 1038, 2079
BstDEI	CTNAG	8 cut(s)	249, 765, 1173, 1382, 1707, 1950, 2094, 2221
BstEII	GGTNACC	1 cut(s)	1180
BstENI	CCTNNNNNAGG	1 cut(s)	1276
BstF5I	GGATG	4 cut(s)	835, 1348, 2210, 2251
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	2 cut(s)	587, 2141
BstHHI	GCGC	3 cut(s)	586, 1301, 2140
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	8 cut(s)	506, 543, 1163, 1451, 1603, 1635, 1846, 1878
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 879, 1042, 1754, 1997, 2318
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	3 cut(s)	410, 428, 749
BstPI	GGTNACC	1 cut(s)	1180
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	2 cut(s)	5, 1316
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	727, 1744, 1987, 2153, 2321
BstV2I	GAAGAC	4 cut(s)	427, 533, 1005, 1521
Bsu36I	CCTNAGG	1 cut(s)	1382
BsuI	GTATCC	1 cut(s)	1391
BsuRI	GGCC	3 cut(s)	84, 1040, 1335
BtsCI	GGATG	4 cut(s)	835, 1348, 2210, 2251
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	4 cut(s)	78, 830, 1728, 1971
Cac8I	GCNNGC	4 cut(s)	147, 588, 1038, 2079
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	3 cut(s)	586, 1301, 2140
Cfr13I	GGNCC	2 cut(s)	1038, 1522
Csp6I	GTAC	2 cut(s)	348, 984
CviAII	CATG	9 cut(s)	305, 368, 407, 425, 746, 815, 1519, 1526, 2159
CviQI	GTAC	2 cut(s)	348, 984
DdeI	CTNAG	8 cut(s)	249, 765, 1173, 1382, 1707, 1950, 2094, 2221
DinI	GGCGCC	1 cut(s)	2139
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DrdI	GACNNNNNNGTC	2 cut(s)	1726, 1969
DseDI	GACNNNNNNGTC	2 cut(s)	1726, 1969
EaeI	YGGCCR	2 cut(s)	82, 1333
Eam1104I	CTCTTC	5 cut(s)	303, 938, 1550, 1581, 1824
EarI	CTCTTC	5 cut(s)	303, 938, 1550, 1581, 1824
Eco47I	GGWCC	1 cut(s)	1522
Eco57I	CTGAAG	2 cut(s)	788, 2309
Eco81I	CCTNAGG	1 cut(s)	1382
Eco91I	GGTNACC	1 cut(s)	1180
EcoNI	CCTNNNNNAGG	1 cut(s)	1276
EcoO65I	GGTNACC	1 cut(s)	1180
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	663
EgeI	GGCGCC	1 cut(s)	2139
EheI	GGCGCC	1 cut(s)	2139
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	9 cut(s)	308, 371, 410, 428, 749, 818, 1522, 1529, 2162
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	9 cut(s)	304, 367, 406, 424, 745, 814, 1518, 1525, 2158
FauI	CCCGC	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	7 cut(s)	5, 716, 1297, 1758, 2001, 2167, 2310
FokI	GGATG	4 cut(s)	842, 1355, 2217, 2258
Fsp4HI	GCNGC	7 cut(s)	5, 716, 1297, 1758, 2001, 2167, 2310
GlaI	GCGC	3 cut(s)	585, 1300, 2139
GluI	GCNGC	7 cut(s)	5, 716, 1297, 1758, 2001, 2167, 2310
HaeII	RGCGCY	2 cut(s)	587, 2141
HaeIII	GGCC	3 cut(s)	84, 1040, 1335
HhaI	GCGC	3 cut(s)	586, 1301, 2140
Hin1I	GRCGYC	2 cut(s)	957, 2138
Hin1II	CATG	9 cut(s)	308, 371, 410, 428, 749, 818, 1522, 1529, 2162
Hin6I	GCGC	3 cut(s)	584, 1299, 2138
HinP1I	GCGC	3 cut(s)	584, 1299, 2138
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	6 cut(s)	301, 445, 791, 1010, 1048, 1322
HphI	GGTGA	1 cut(s)	1192
Hpy166II	GTNNAC	2 cut(s)	115, 846
Hpy188III	TCNNGA	7 cut(s)	269, 305, 398, 413, 623, 1771, 2014
Hpy8I	GTNNAC	2 cut(s)	115, 846
Hpy99I	CGWCG	1 cut(s)	962
HpyCH4III	ACNGT	3 cut(s)	73, 1723, 1966
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 879, 1042, 1754, 1997, 2318
HpyF3I	CTNAG	8 cut(s)	249, 765, 1173, 1382, 1707, 1950, 2094, 2221
HpySE526I	ACGT	1 cut(s)	957
Hsp92I	GRCGYC	2 cut(s)	957, 2138
Hsp92II	CATG	9 cut(s)	308, 371, 410, 428, 749, 818, 1522, 1529, 2162
HspAI	GCGC	3 cut(s)	584, 1299, 2138
KasI	GGCGCC	1 cut(s)	2137
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	660
LguI	GCTCTTC	2 cut(s)	938, 1550
Lsp1109I	GCAGC	5 cut(s)	727, 1744, 1987, 2153, 2321
LweI	GCATC	1 cut(s)	2107
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	5 cut(s)	28, 335, 472, 571, 1180
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MlsI	TGGCCA	1 cut(s)	1335
MluNI	TGGCCA	1 cut(s)	1335
Mly113I	GGCGCC	1 cut(s)	2138
MlyI	GAGTC	1 cut(s)	1004
Mox20I	TGGCCA	1 cut(s)	1335
MscI	TGGCCA	1 cut(s)	1335
Msp20I	TGGCCA	1 cut(s)	1335
MspA1I	CMGCKG	1 cut(s)	989
MspCI	CTTAAG	1 cut(s)	1154
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	5 cut(s)	289, 615, 882, 2117, 2213
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	10, 879, 1042, 1754, 1997, 2318
NarI	GGCGCC	1 cut(s)	2138
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	9 cut(s)	308, 371, 410, 428, 749, 818, 1522, 1529, 2162
NlaIV	GGNNCC	2 cut(s)	349, 2139
NmuCI	GTSAC	4 cut(s)	28, 335, 571, 1180
NspI	RCATGY	3 cut(s)	410, 428, 749
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	2 cut(s)	406, 424
PciSI	GCTCTTC	2 cut(s)	938, 1550
PctI	GAATGC	5 cut(s)	289, 615, 882, 2117, 2213
PfeI	GAWTC	5 cut(s)	301, 445, 791, 1048, 1322
PflFI	GACNNNGTC	2 cut(s)	577, 1520
PkrI	GCNGC	7 cut(s)	6, 717, 1298, 1759, 2002, 2168, 2311
PleI	GAGTC	1 cut(s)	1004
PluTI	GGCGCC	1 cut(s)	2141
PpsI	GAGTC	1 cut(s)	1004
PscI	ACATGT	2 cut(s)	406, 424
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	1180
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	349, 2139
PspPI	GGNCC	2 cut(s)	1038, 1522
PstI	CTGCAG	1 cut(s)	9
PsyI	GACNNNGTC	2 cut(s)	577, 1520
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	2 cut(s)	349, 985
RsaNI	GTAC	2 cut(s)	348, 984
SapI	GCTCTTC	2 cut(s)	938, 1550
SatI	GCNGC	7 cut(s)	5, 716, 1297, 1758, 2001, 2167, 2310
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	2 cut(s)	1038, 1522
SchI	GAGTC	1 cut(s)	1004
ScrFI	CCNGG	1 cut(s)	665
SfaNI	GCATC	1 cut(s)	2107
SfcI	CTRYAG	2 cut(s)	5, 1316
SfoI	GGCGCC	1 cut(s)	2139
SinI	GGWCC	1 cut(s)	1522
SmlI	CTYRAG	4 cut(s)	562, 1012, 1154, 2132
SmoI	CTYRAG	4 cut(s)	562, 1012, 1154, 2132
SsiI	CCGC	8 cut(s)	220, 1036, 1083, 1296, 1652, 1895, 2152, 2321
SspDI	GGCGCC	1 cut(s)	2137
SspI	AATATT	4 cut(s)	231, 773, 2121, 2301
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	73, 1723, 1966
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	443, 835
TauI	GCSGC	1 cut(s)	1299
TfiI	GAWTC	5 cut(s)	301, 445, 791, 1048, 1322
TscAI	CASTG	4 cut(s)	85, 830, 1728, 1971
TseFI	GTSAC	4 cut(s)	28, 335, 571, 1180
TseI	GCWGC	6 cut(s)	4, 715, 1757, 2000, 2166, 2309
Tsp45I	GTSAC	4 cut(s)	28, 335, 571, 1180
TspGWI	ACGGA	2 cut(s)	161, 1487
TspRI	CASTG	4 cut(s)	85, 830, 1728, 1971
Tth111I	GACNNNGTC	2 cut(s)	577, 1520
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	1 cut(s)	1522
XagI	CCTNNNNNAGG	1 cut(s)	1276
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	3 cut(s)	410, 428, 749
XmiI	GTMKAC	1 cut(s)	845
ZraI	GACGTC	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.