Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018054.1

Orthogroup ID

OG0010218

Physical Location & Seq

Genomic Coordinates Forward (+)

2124 .. 6698

Gene Structure 4575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3201 bp

ctgtacgcgctagagagaaagaaacgaggtcttccccctgtccggcggcgtgcctctacgccgtcgtcggacgggccaataccgactccgcgcgagttgggtgtgaggccgggtctatcgatcagcgttctcagtccgatcggtgggatcacggtggatgtcagtgagggaggggaaaactatagctgctggcttctgggtctctcctcgatggtcaactcgacggattcgatctcagatttggaggcgatcaggcggcgagacgttcggcgcagcgtggccgggggctactcggagcggtccgatctggtcaggatcctctggtcccgatctgggtcttctccatggtgcgacgaagcttgtttctctgaaggttctggttttgatctgggatggcagatcgctgatggaggtttggcgacagcggctgggcggccctctgcagggtccggcggcggtggctataggggatttgggcctggcccggccggcagattgtggggttggcagcgagtttttggcctcgtcaaatggtcgttaccgcctagtgggaggatgaagctaagtgtcgtcggatttatcatctggcggcaacatagtagggaagttgtgctaaagcaggtatttatgctaggttgtacgcggggacatgcaaatgcaatgattaataaaaccgaatcatccaatcccttcttcccactacttcgtcccgacgcgccctcccacctggagaaacccttgatcaaactcaccacgtgtctcatctttcccactcaaaaccccatcgaactgttttcctcttgtcgtattcaattcactttccgattccctttcttctccggactaagatctcggtccggaaacccacgccgcgacgacatgtcgtcgcgtaattccagcaacatgtccacgaccagaactctcagcgggatatccgaaatggaggccgcgaaactcgggttggatctcgtgtccgccgccaggcgaaacctcggcttcctccgaactgtagccgagtctcggtggctgcacaggaagccaacgcttgtcgaagccataagaaggtacagtgagctctggatgccgttgatggctcatctgacggcggagtcaacgttaacgacgactccagtggttcatcctcctatagatattgagtgggtttggttctgtcacacacttaatccggttcattataggcaatactgtgagtccaggttttcaagacttataggaaagcccaccatttttgatgaagagaatgaagagtatgcattaatgaggtgcagagatttttgggtcaaaaggtacccagatgagccatttgagaatgaagctgattctgatgtgggggtatcagaggtagctattgatgaggacattgaggagctattggaggaagtgagcaagcataggtttttgtattcgaaattttcagagccatacaggtctgagattgtgtatttgatagcagcaaggcaaaggtacaaggggtttttgttcatggtgcagaggtctattgatttgggttcaaatttggttcctgcctctgacattatgctaatgtggctcatccatcagagttatccaactgtatatgctgaagatttgaaagagatggagggtgattttgtgaaagtgttaaccgtgtgggacaaagtcaaggaaaaagaggtggaggagaccaaaaagttgtgggagaggacttttgatcaaccatatgagaaagctggtggggaaatagctttcaaattggatgggggtgtctcattcaagccgccagtttactgggaggtttcggatacagatatcaataccaaatacaagcccctgctgcctaggttcttgcttgaggtctgtgtgtttgtcaggcttagggataaaatgaaggcaatgcaggaggatataagacgtgataaccttcgtcttcgaattgtgaggtgccatagggagttaaagcttgaaaaagccatgtcggacttttctcattcgtcatggcgcaaagcttggcatctctgctgtgagtttggaaccaaaggagttatggtggagcttcgtcggcgtggtggctactgttttaaaggaaatagtgtgcaggacactgttacgttctattggaatgacttacttagagcaccctctctatctttggaaaaagaagatgatgaagtgaaaattgttacttcgataactccaccagttcaggcaccatacctgatgaaatgtgtgccagaccgtgtcacagatgattctggagcaatgatatcagatgtgattctgagaatgaaccagtatcatccccaagaaggccggtggttgtctcgcactgtgcttgatcatgctgggagggagtgtttcgtgattcgaataagggtgggagaaggattttggagaagaggaggcgaggctccatcagctgtgaaatgggaggataggattatagagattcgagaaggttcttggtcgtatgttgccggttccattggtagatcccctgcgaaagtagtaggaaccgccttaccaaaagaaccagcggaacaatggaaagctgcatggcacttttcaactggagatgaattgatgatagggggattgccatcgtcagtatcaggtctgagattttgtttgaagaatcaagctgcagaatcaaccgttaagctcttaaaaggacgaaggatgcaatatcaagtaaaaaagaaagggtctgtaacaaaggatgaggaatgtcaaatttatgaagaaggtgaagaggaggaagaggaagatgaagaagaggggtttttaacccttgtccggacaactgaagacgatccaattggaagagcaacggctcttttgaattggaagctattagtagtggagttatggcctgaagaagatgcagtatttgtacttcttctatgcatttgtatactaagaagtgtatctgagattaaaaaagaagatattggaggtttgttgattagaagaagactaggggaagaaaaatttgggaccagagattggggttctgtagtactccacccttccttaagttcttcatttaattcttcacctcacattgaaccttggtactggaatgcaaaggcagttataaaatcgggtggttcaattaacatcaccaggcaaccagctgttactgtgggatattcaccggaggaaggcagtgataagttgtacaaacgagggatactagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

1066

Amino Acids

121.0

Weight (kDa)

7.79

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56230 AT1G56230 AT1G56230 AT1G56230
fragaria_vesca	FvH4_6g06870
malus_domestica	MD04G1197900.v1.1
prunus_persica	Prupe.6G318400_v2.0.a1 Prupe.6G318400_v2.0.a1
pyrus_communis	pycom04g17510
rosa_chinensis	RchiOBHm_Chr3g0456361
rosa_laevigata	RLG00000025309
rosa_multiflora	Rmu_sc0002607.1_g000019 Rmu_sc0018054.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422780
rosa_rugosa	Rorug03G0012700 Rorug03G0012700
rosa_samantha	Rh3AG072900 Rh3BG075000 Rh3CG074600 Rh3DG076400
rosa_wichuraiana	Rw3G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3095
AasI	GACNNNNNNGTC	1 cut(s)	1108
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	1308
AccB1I	GGYRCC	3 cut(s)	1308, 1941, 2206
AccB7I	CCANNNNNTGG	1 cut(s)	3003
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	2911
AccII	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
AccIII	TCCGGA	3 cut(s)	839, 857, 2793
AclI	AACGTT	1 cut(s)	1115
AclWI	GGATC	6 cut(s)	155, 310, 323, 972, 2484, 2804
AcoI	YGGCCR	2 cut(s)	279, 486
AcsI	RAATTY	4 cut(s)	1430, 1534, 2730, 2987
AcuI	CTGAAG	4 cut(s)	390, 1623, 2823, 2892
AcvI	CACGTG	1 cut(s)	756
AdeI	CACNNNGTG	1 cut(s)	756
AfaI	GTAC	9 cut(s)	5, 640, 1067, 1310, 1487, 2892, 3018, 3074, 3179
AflII	CTTAAG	1 cut(s)	3031
AflIII	ACRYGT	3 cut(s)	755, 879, 903
AhdI	GACNNNNNGTC	2 cut(s)	880, 883
AjiI	CACGTC	1 cut(s)	1913
AjnI	CCWGG	5 cut(s)	478, 726, 980, 1214, 3122
AjuI	GAANNNNNNNTTGG	6 cut(s)	677, 709, 944, 976, 2973, 3005
Alw21I	GWGCWC	2 cut(s)	1077, 2137
Alw26I	GTCTC	7 cut(s)	206, 255, 764, 1023, 1676, 1771, 2325
AlwI	GGATC	6 cut(s)	155, 310, 323, 972, 2484, 2804
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	956
Aor13HI	TCCGGA	3 cut(s)	839, 857, 2793
ApeKI	GCWGC	8 cut(s)	186, 273, 508, 1027, 1472, 1834, 2549, 2639
ApoI	RAATTY	4 cut(s)	1430, 1534, 2730, 2987
AseI	ATTAAT	2 cut(s)	666, 1277
Asp718I	GGTACC	1 cut(s)	1308
AspA2I	CCTAGG	1 cut(s)	1838
AspLEI	GCGC	5 cut(s)	10, 93, 273, 718, 2001
AspS9I	GGNCC	9 cut(s)	74, 300, 324, 435, 447, 476, 482, 855, 2994
AsuC2I	CCSGG	3 cut(s)	111, 283, 485
AsuHPI	GGTGA	6 cut(s)	742, 1637, 2756, 3045, 3112, 3144
AsuII	TTCGAA	3 cut(s)	1427, 1930, 2365
AvaI	CYCGRG	1 cut(s)	956
AvaII	GGWCC	5 cut(s)	300, 324, 447, 855, 2994
AvrII	CCTAGG	1 cut(s)	1838
BamHI	GGATCC	1 cut(s)	315
BanI	GGYRCC	3 cut(s)	1308, 1941, 2206
BanII	GRGCYC	1 cut(s)	1077
BarI	GAAGNNNNNNTAC	2 cut(s)	2877, 2909
BauI	CACGAG	1 cut(s)	968
BbrPI	CACGTG	1 cut(s)	756
BbsI	GAAGAC	5 cut(s)	23, 330, 1919, 2811, 2977
Bbv12I	GWGCWC	2 cut(s)	1077, 2137
BbvI	GCAGC	8 cut(s)	173, 285, 520, 1014, 1484, 1821, 2536, 2626
BceAI	ACGGC	4 cut(s)	46, 1069, 1119, 2844
BciT130I	CCWGG	5 cut(s)	480, 728, 982, 1216, 3124
BciVI	GTATCC	2 cut(s)	1795, 3183
BclI	TGATCA	3 cut(s)	741, 1711, 2335
BcnI	CCSGG	3 cut(s)	111, 283, 485
BcoDI	GTCTC	7 cut(s)	206, 255, 764, 1023, 1676, 1771, 2325
BfaI	CTAG	6 cut(s)	11, 546, 632, 1839, 2975, 3194
BfmI	CTRYAG	7 cut(s)	181, 441, 463, 1008, 1146, 2640, 3012
BfrI	CTTAAG	1 cut(s)	3031
BfuAI	ACCTGC	1 cut(s)	610
BfuI	GTATCC	2 cut(s)	1795, 3183
BglI	GCCNNNNNGGC	1 cut(s)	489
BglII	AGATCT	1 cut(s)	848
BlnI	CCTAGG	1 cut(s)	1838
BmcAI	AGTACT	1 cut(s)	3018
Bme1390I	CCNGG	8 cut(s)	111, 283, 480, 485, 728, 982, 1216, 3124
Bme18I	GGWCC	5 cut(s)	300, 324, 447, 855, 2994
BmeRI	GACNNNNNGTC	2 cut(s)	880, 883
BmeT110I	CYCGRG	1 cut(s)	956
BmgBI	CACGTC	1 cut(s)	1913
BmgT120I	GGNCC	9 cut(s)	74, 300, 324, 435, 447, 476, 482, 855, 2994
BmrFI	CCNGG	8 cut(s)	111, 283, 480, 485, 728, 982, 1216, 3124
BmrI	ACTGGG	1 cut(s)	1798
BmsI	GCATC	4 cut(s)	1071, 2020, 2667, 2869
BmuI	ACTGGG	1 cut(s)	1798
BpiI	GAAGAC	5 cut(s)	23, 330, 1919, 2811, 2977
BpmI	CTGGAG	4 cut(s)	749, 1113, 2274, 2589
Bpu10I	CCTNAGC	1 cut(s)	1874
Bpu14I	TTCGAA	3 cut(s)	1427, 1930, 2365
BpuEI	CTTGAG	1 cut(s)	1871
BpuMI	CCSGG	3 cut(s)	111, 283, 485
Bsa29I	ATCGAT	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	2596
BsaI	GGTCTC	2 cut(s)	206, 1676
BsaJI	CCNNGG	5 cut(s)	282, 344, 991, 1838, 3068
BsaWI	WCCGGW	5 cut(s)	839, 857, 1186, 2793, 3154
Bse118I	RCCGGY	3 cut(s)	488, 2310, 2474
Bse1I	ACTGG	7 cut(s)	1130, 1781, 1793, 2198, 2290, 2572, 3080
Bse3DI	GCAATG	3 cut(s)	666, 1899, 2265
Bse8I	GATNNNNATC	1 cut(s)	2596
BseAI	TCCGGA	3 cut(s)	839, 857, 2793
BseBI	CCWGG	5 cut(s)	480, 728, 982, 1216, 3124
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	282, 344, 991, 1838, 3068
BseJI	GATNNNNATC	1 cut(s)	2596
BseMI	GCAATG	3 cut(s)	666, 1899, 2265
BseMII	CTCAG	7 cut(s)	145, 249, 937, 1443, 2270, 2606, 2919
BseNI	ACTGG	7 cut(s)	1130, 1781, 1793, 2198, 2290, 2572, 3080
BseRI	GAGGAG	5 cut(s)	196, 1400, 1694, 2412, 2765
BseX3I	CGGCCG	1 cut(s)	486
BseXI	GCAGC	8 cut(s)	173, 285, 520, 1014, 1484, 1821, 2536, 2626
BseYI	CCCAGC	2 cut(s)	428, 2342
BsgI	GTGCAG	4 cut(s)	1013, 1306, 1529, 2114
Bsh1236I	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
Bsh1285I	CGRYCG	2 cut(s)	141, 489
BshNI	GGYRCC	3 cut(s)	1308, 1941, 2206
BshVI	ATCGAT	1 cut(s)	119
BsiEI	CGRYCG	2 cut(s)	141, 489
BsiHKAI	GWGCWC	2 cut(s)	1077, 2137
BsiHKCI	CYCGRG	1 cut(s)	956
BslFI	GGGAC	5 cut(s)	310, 660, 693, 1667, 3007
BsmAI	GTCTC	7 cut(s)	206, 255, 764, 1023, 1676, 1771, 2325
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	5 cut(s)	310, 660, 693, 1667, 3007
BsmI	GAATGC	1 cut(s)	3085
Bso31I	GGTCTC	2 cut(s)	206, 1676
BsoBI	CYCGRG	1 cut(s)	956
Bsp119I	TTCGAA	3 cut(s)	1427, 1930, 2365
Bsp1286I	GDGCHC	2 cut(s)	1077, 2137
Bsp13I	TCCGGA	3 cut(s)	839, 857, 2793
Bsp1407I	TGTACA	1 cut(s)	3177
Bsp19I	CCATGG	1 cut(s)	344
BspCNI	CTCAG	7 cut(s)	144, 248, 936, 1444, 2271, 2607, 2920
BspDI	ATCGAT	1 cut(s)	119
BspEI	TCCGGA	3 cut(s)	839, 857, 2793
BspFNI	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
BspMAI	CTGCAG	2 cut(s)	445, 2644
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	6 cut(s)	155, 310, 323, 972, 2484, 2804
BspQI	GCTCTTC	1 cut(s)	2815
BspT104I	TTCGAA	3 cut(s)	1427, 1930, 2365
BspT107I	GGYRCC	3 cut(s)	1308, 1941, 2206
BspTI	CTTAAG	1 cut(s)	3031
BspTNI	GGTCTC	2 cut(s)	206, 1676
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	3 cut(s)	666, 1899, 2265
BsrFI	RCCGGY	3 cut(s)	488, 2310, 2474
BsrGI	TGTACA	1 cut(s)	3177
BsrI	ACTGG	7 cut(s)	1130, 1781, 1793, 2198, 2290, 2572, 3080
BssAI	RCCGGY	3 cut(s)	488, 2310, 2474
BssECI	CCNNGG	5 cut(s)	282, 344, 991, 1838, 3068
BssNAI	GTATAC	1 cut(s)	2912
BssSI	CACGAG	1 cut(s)	968
BssT1I	CCWWGG	3 cut(s)	344, 1838, 3068
Bst1107I	GTATAC	1 cut(s)	2912
Bst2BI	CACGAG	1 cut(s)	968
Bst2UI	CCWGG	5 cut(s)	480, 728, 982, 1216, 3124
Bst6I	CTCTTC	7 cut(s)	1251, 1260, 2389, 2742, 2751, 2766, 2815
BstAFI	CTTAAG	1 cut(s)	3031
BstAUI	TGTACA	1 cut(s)	3177
BstBAI	YACGTR	1 cut(s)	756
BstBI	TTCGAA	3 cut(s)	1427, 1930, 2365
BstC8I	GCNNGC	4 cut(s)	51, 191, 490, 1409
BstDSI	CCRYGG	1 cut(s)	344
BstFNI	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
BstHHI	GCGC	5 cut(s)	10, 93, 273, 718, 2001
BstMAI	GTCTC	7 cut(s)	206, 255, 764, 1023, 1676, 1771, 2325
BstMCI	CGRYCG	2 cut(s)	141, 489
BstMWI	GCNNNNNNNGC	9 cut(s)	425, 459, 489, 1036, 1081, 1567, 1834, 2059, 2414
BstNI	CCWGG	5 cut(s)	480, 728, 982, 1216, 3124
BstNSI	RCATGY	3 cut(s)	653, 883, 907
BstSCI	CCNGG	8 cut(s)	109, 281, 478, 483, 726, 980, 1214, 3122
BstSFI	CTRYAG	7 cut(s)	181, 441, 463, 1008, 1146, 2640, 3012
BstUI	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
BstV1I	GCAGC	8 cut(s)	173, 285, 520, 1014, 1484, 1821, 2536, 2626
BstV2I	GAAGAC	5 cut(s)	23, 330, 1919, 2811, 2977
BstX2I	RGATCY	4 cut(s)	315, 848, 964, 2489
BstXI	CCANNNNNNTGG	1 cut(s)	1788
BstYI	RGATCY	4 cut(s)	315, 848, 964, 2489
BstZ17I	GTATAC	1 cut(s)	2912
BstZI	CGGCCG	1 cut(s)	486
Bsu15I	ATCGAT	1 cut(s)	119
BsuI	GTATCC	2 cut(s)	1795, 3183
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	1913
BtsI	GCAGTG	1 cut(s)	3172
BtsIMutI	CAGTG	6 cut(s)	169, 1075, 1137, 2100, 2325, 3172
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	51, 191, 490, 1409
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	5 cut(s)	10, 93, 273, 718, 2001
Cfr10I	RCCGGY	3 cut(s)	488, 2310, 2474
Cfr13I	GGNCC	9 cut(s)	74, 300, 324, 435, 447, 476, 482, 855, 2994
ClaI	ATCGAT	1 cut(s)	119
CpoI	CGGWCCG	2 cut(s)	300, 855
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	9 cut(s)	4, 639, 1066, 1309, 1486, 2891, 3017, 3073, 3178
CspCI	CAANNNNNGTGG	2 cut(s)	1231, 1266
CspI	CGGWCCG	2 cut(s)	300, 855
CviQI	GTAC	9 cut(s)	4, 639, 1066, 1309, 1486, 2891, 3017, 3073, 3178
DraI	TTTAAA	1 cut(s)	2080
DraIII	CACNNNGTG	1 cut(s)	756
DrdI	GACNNNNNNGTC	1 cut(s)	1108
DriI	GACNNNNNGTC	2 cut(s)	880, 883
DseDI	GACNNNNNNGTC	1 cut(s)	1108
EaeI	YGGCCR	2 cut(s)	279, 486
EagI	CGGCCG	1 cut(s)	486
Eam1104I	CTCTTC	7 cut(s)	1251, 1260, 2389, 2742, 2751, 2766, 2815
Eam1105I	GACNNNNNGTC	2 cut(s)	880, 883
EarI	CTCTTC	7 cut(s)	1251, 1260, 2389, 2742, 2751, 2766, 2815
EciI	GGCGGA	2 cut(s)	964, 1121
Ecl136II	GAGCTC	1 cut(s)	1075
EclXI	CGGCCG	1 cut(s)	486
Eco130I	CCWWGG	3 cut(s)	344, 1838, 3068
Eco24I	GRGCYC	1 cut(s)	1077
Eco31I	GGTCTC	2 cut(s)	206, 1676
Eco32I	GATATC	3 cut(s)	933, 1810, 2265
Eco47I	GGWCC	5 cut(s)	300, 324, 447, 855, 2994
Eco52I	CGGCCG	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	4 cut(s)	390, 1623, 2823, 2892
Eco72I	CACGTG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	956
EcoICRI	GAGCTC	1 cut(s)	1075
EcoRII	CCWGG	5 cut(s)	478, 726, 980, 1214, 3122
EcoRV	GATATC	3 cut(s)	933, 1810, 2265
EcoT14I	CCWWGG	3 cut(s)	344, 1838, 3068
EcoT22I	ATGCAT	2 cut(s)	1276, 2906
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	3 cut(s)	344, 1838, 3068
Esp3I	CGTCTC	1 cut(s)	255
FaqI	GGGAC	5 cut(s)	310, 660, 693, 1667, 3007
FauI	CCCGC	2 cut(s)	636, 920
FauNDI	CATATG	1 cut(s)	1720
FbaI	TGATCA	3 cut(s)	741, 1711, 2335
FblI	GTMKAC	1 cut(s)	2911
FriOI	GRGCYC	1 cut(s)	1077
FspBI	CTAG	6 cut(s)	11, 546, 632, 1839, 2975, 3194
GlaI	GCGC	5 cut(s)	9, 92, 272, 717, 2000
GsaI	CCCAGC	2 cut(s)	432, 2346
GsuI	CTGGAG	4 cut(s)	749, 1113, 2274, 2589
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	5 cut(s)	10, 93, 273, 718, 2001
Hin6I	GCGC	5 cut(s)	8, 91, 271, 716, 1999
HinP1I	GCGC	5 cut(s)	8, 91, 271, 716, 1999
HincII	GTYRAC	4 cut(s)	217, 1113, 1119, 1644
HindII	GTYRAC	4 cut(s)	217, 1113, 1119, 1644
HindIII	AAGCTT	3 cut(s)	357, 1958, 2004
HpaI	GTTAAC	2 cut(s)	1119, 1644
HphI	GGTGA	6 cut(s)	742, 1637, 2756, 3045, 3112, 3144
Hpy166II	GTNNAC	7 cut(s)	217, 909, 1113, 1119, 1644, 1786, 2912
Hpy8I	GTNNAC	7 cut(s)	217, 909, 1113, 1119, 1644, 1786, 2912
HpyCH4IV	ACGT	5 cut(s)	264, 755, 1115, 1912, 2108
HpyF10VI	GCNNNNNNNGC	9 cut(s)	425, 459, 489, 1036, 1081, 1567, 1834, 2059, 2414
HpySE526I	ACGT	5 cut(s)	264, 755, 1115, 1912, 2108
HspAI	GCGC	5 cut(s)	8, 91, 271, 716, 1999
Kpn2I	TCCGGA	3 cut(s)	839, 857, 2793
KpnI	GGTACC	1 cut(s)	1312
KroI	GCCGGC	1 cut(s)	488
KroNI	GCCGGC	1 cut(s)	490
Ksp22I	TGATCA	3 cut(s)	741, 1711, 2335
KspAI	GTTAAC	2 cut(s)	1119, 1644
LguI	GCTCTTC	1 cut(s)	2815
LmnI	GCTCC	5 cut(s)	295, 1387, 2050, 2255, 2413
Lsp1109I	GCAGC	8 cut(s)	173, 285, 520, 1014, 1484, 1821, 2536, 2626
LweI	GCATC	4 cut(s)	1071, 2020, 2667, 2869
MaeI	CTAG	6 cut(s)	11, 546, 632, 1839, 2975, 3194
MaeII	ACGT	5 cut(s)	264, 755, 1115, 1912, 2108
MaeIII	GTNAC	7 cut(s)	537, 1172, 2104, 2179, 2239, 2707, 3136
MbiI	CCGCTC	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	2814
MflI	RGATCY	4 cut(s)	315, 848, 964, 2489
MhlI	GDGCHC	2 cut(s)	1077, 2137
MlyI	GAGTC	5 cut(s)	79, 1025, 1118, 1120, 1220
MmeI	TCCRAC	5 cut(s)	48, 553, 942, 1613, 1956
Mph1103I	ATGCAT	2 cut(s)	1276, 2906
MroI	TCCGGA	3 cut(s)	839, 857, 2793
MroNI	GCCGGC	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	5 cut(s)	425, 927, 2417, 2534, 3134
MspCI	CTTAAG	1 cut(s)	3031
MspR9I	CCNGG	8 cut(s)	111, 283, 480, 485, 728, 982, 1216, 3124
MunI	CAATTG	1 cut(s)	2814
Mva1269I	GAATGC	1 cut(s)	3085
MvaI	CCWGG	5 cut(s)	480, 728, 982, 1216, 3124
MvnI	CGCG	8 cut(s)	8, 91, 93, 643, 716, 873, 889, 950
MwoI	GCNNNNNNNGC	9 cut(s)	425, 459, 489, 1036, 1081, 1567, 1834, 2059, 2414
NaeI	GCCGGC	1 cut(s)	490
NciI	CCSGG	3 cut(s)	111, 283, 485
NcoI	CCATGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	1720
NgoMIV	GCCGGC	1 cut(s)	488
NmeAIII	GCCGAG	2 cut(s)	972, 1039
NmuCI	GTSAC	2 cut(s)	1172, 2239
NsiI	ATGCAT	2 cut(s)	1276, 2906
NspI	RCATGY	3 cut(s)	653, 883, 907
NspV	TTCGAA	3 cut(s)	1427, 1930, 2365
PciI	ACATGT	2 cut(s)	879, 903
PciSI	GCTCTTC	1 cut(s)	2815
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 1121
PctI	GAATGC	1 cut(s)	3085
PdiI	GCCGGC	1 cut(s)	490
PflFI	GACNNNGTC	2 cut(s)	1658, 2237
PflMI	CCANNNNNTGG	1 cut(s)	3003
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	5 cut(s)	79, 1024, 1117, 1120, 1219
PmaCI	CACGTG	1 cut(s)	756
PmlI	CACGTG	1 cut(s)	756
PpsI	GAGTC	5 cut(s)	79, 1024, 1117, 1120, 1219
Ppu21I	YACGTR	1 cut(s)	756
PscI	ACATGT	2 cut(s)	879, 903
PshBI	ATTAAT	2 cut(s)	666, 1277
PsiI	TTATAA	1 cut(s)	3095
Psp124BI	GAGCTC	1 cut(s)	1077
Psp1406I	AACGTT	1 cut(s)	1115
Psp6I	CCWGG	5 cut(s)	478, 726, 980, 1214, 3122
PspCI	CACGTG	1 cut(s)	756
PspFI	CCCAGC	2 cut(s)	428, 2342
PspGI	CCWGG	5 cut(s)	478, 726, 980, 1214, 3122
PspPI	GGNCC	9 cut(s)	74, 300, 324, 435, 447, 476, 482, 855, 2994
PstI	CTGCAG	2 cut(s)	445, 2644
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	4 cut(s)	315, 848, 964, 2489
PsyI	GACNNNGTC	2 cut(s)	1658, 2237
PvuI	CGATCG	1 cut(s)	141
PvuII	CAGCTG	2 cut(s)	2417, 3134
RsaI	GTAC	9 cut(s)	5, 640, 1067, 1310, 1487, 2892, 3018, 3074, 3179
RsaNI	GTAC	9 cut(s)	4, 639, 1066, 1309, 1486, 2891, 3017, 3073, 3178
RseI	CAYNNNNRTG	1 cut(s)	654
Rsr2I	CGGWCCG	2 cut(s)	300, 855
RsrII	CGGWCCG	2 cut(s)	300, 855
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	2815
Sau96I	GGNCC	9 cut(s)	74, 300, 324, 435, 447, 476, 482, 855, 2994
ScaI	AGTACT	1 cut(s)	3018
SchI	GAGTC	5 cut(s)	79, 1025, 1118, 1120, 1220
ScrFI	CCNGG	8 cut(s)	111, 283, 480, 485, 728, 982, 1216, 3124
SduI	GDGCHC	2 cut(s)	1077, 2137
SfaNI	GCATC	4 cut(s)	1071, 2020, 2667, 2869
SfcI	CTRYAG	7 cut(s)	181, 441, 463, 1008, 1146, 2640, 3012
SfuI	TTCGAA	3 cut(s)	1427, 1930, 2365
SinI	GGWCC	5 cut(s)	300, 324, 447, 855, 2994
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	2 cut(s)	1850, 3031
SmoI	CTYRAG	2 cut(s)	1850, 3031
SspMI	CTAG	6 cut(s)	11, 546, 632, 1839, 2975, 3194
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	8 cut(s)	109, 281, 478, 483, 726, 980, 1214, 3122
StyI	CCWWGG	3 cut(s)	344, 1838, 3068
TaiI	ACGT	5 cut(s)	267, 758, 1118, 1915, 2111
TaqII	GACCGA	1 cut(s)	843
TatI	WGTACW	3 cut(s)	2890, 3016, 3177
TscAI	CASTG	6 cut(s)	169, 1075, 1137, 2107, 2332, 3172
TseFI	GTSAC	2 cut(s)	1172, 2239
TseI	GCWGC	8 cut(s)	186, 273, 508, 1027, 1472, 1834, 2549, 2639
Tsp45I	GTSAC	2 cut(s)	1172, 2239
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	6 cut(s)	169, 1075, 1137, 2107, 2332, 3172
Tth111I	GACNNNGTC	2 cut(s)	1658, 2237
Van91I	CCANNNNNTGG	1 cut(s)	3003
Vha464I	CTTAAG	1 cut(s)	3031
VpaK11BI	GGWCC	5 cut(s)	300, 324, 447, 855, 2994
VspI	ATTAAT	2 cut(s)	666, 1277
XapI	RAATTY	4 cut(s)	1430, 1534, 2730, 2987
XceI	RCATGY	3 cut(s)	653, 883, 907
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2041, 2538
XmaJI	CCTAGG	1 cut(s)	1838
XmiI	GTMKAC	1 cut(s)	2911
XspI	CTAG	6 cut(s)	11, 546, 632, 1839, 2975, 3194
ZrmI	AGTACT	1 cut(s)	3018
Zsp2I	ATGCAT	2 cut(s)	1276, 2906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.