Rmu_sc0021325.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021325.1
OG0019471
Physical Location & Seq
Forward (+)
1 .. 2024
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021325.1_g000001.1.cds

Sequence Viewer

Length: 985 bp
gcccggcttgcccaagctcaaagtcagacccagaaccccaggcccaattccaagcccaggaaactgctctgagcaacgccaccgcagctgcaagttccggcggccgtcttctccagagagccatactcgactttctgtagcgaagcaaaccgatccacccgtaacatccgaccggctggaaaccagtagaatccaaacgcgaccccgatctgcctcccaaatcaacctcgacgatcaactttgctatggaccgccgccgacttcgttgcttcaaccgaaacccagattcacagccgacctcggcgatcaattttgtgtcttacaaatatccacaccgatggggggcgacgtcattcaaaatacccgcacgaaggcccgattcatggatggcgaagaagaagaagaagaaggtcggactgagcgaagaagatgggaggagttacaattcccagaccatgtacgttgtccattgttcattgctaatgtggatgatgatatgttcattcgtaatgttgatgatgatgttgggcctcggagttttgaagcggtgagatatgtttcacatgagcgccccctccttaaggttatctggttcaaggatgatttagttgtgttcaagagttctcagattattccagaggaaattgcaaagtggaaatttttggagtcggttttgttggcatcagaaagtgtcctctgctacaatgttttggatagaatccttgtgcagattggcactcactacaagtattttacagatttaaacatttttcacgccactgtcggtgaagttgaggcatccacaattgtgaactcgatgccaaaccttcagaattgttttgctagaaattgtcgcattgaaagggatggtgttgttacgctactgccgagctgcaaacagcttgtgctttttgatgcccagaactgtgaaggttttgaagagggtgatggagaaatatcaaagcttaattgcttcctatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.3

Weight (kDa)

5.66

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019471)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012610
rosa_multiflora Rmu_sc0021325.1_g000001 Rmu_sc0041399.1_g000001
rosa_roxburghii Rroxscaffold_7G00182720
rosa_rugosa Rorug06G0176900
rosa_samantha Rh6BG290600 Rh6CG291200 Rh6DG283700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 352
AccII CGCG 1 cut(s) 200
AciI CCGC 6 cut(s) 83, 101, 252, 255, 365, 546
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 1 cut(s) 349
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 5 cut(s) 57, 342, 371, 383, 581
AflII CTTAAG 1 cut(s) 579
AgsI TTSAA 7 cut(s) 273, 357, 543, 596, 617, 861, 939
AjnI CCWGG 2 cut(s) 38, 56
AleI CACNNNNGTG 1 cut(s) 807
AluBI AGCT 5 cut(s) 17, 88, 892, 902, 965
AluI AGCT 5 cut(s) 17, 88, 892, 902, 965
AlwI GGATC 1 cut(s) 147
AoxI GGCC 4 cut(s) 41, 102, 373, 528
ApeKI GCWGC 3 cut(s) 85, 88, 892
ApoI RAATTY 1 cut(s) 657
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 4 cut(s) 42, 249, 374, 528
AsuC2I CCSGG 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 560, 798, 957
AvaII GGWCC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 75, 97, 879
BccI CCATC 5 cut(s) 332, 381, 424, 861, 942
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 2 cut(s) 40, 58
BcnI CCSGG 1 cut(s) 4
BfaI CTAG 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 572
BfrI CTTAAG 1 cut(s) 579
BisI GCNGC 5 cut(s) 86, 89, 102, 255, 893
BlsI GCNGC 5 cut(s) 87, 90, 103, 256, 894
Bme1390I CCNGG 3 cut(s) 4, 40, 58
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 4 cut(s) 42, 249, 374, 528
BmrFI CCNGG 3 cut(s) 4, 40, 58
BmsI GCATC 4 cut(s) 690, 807, 808, 905
BpiI GAAGAC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 38, 56, 299, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 342, 371, 383, 581
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 2 cut(s) 40, 58
BseDI CCNNGG 4 cut(s) 38, 56, 299, 531
BseGI GGATG 6 cut(s) 165, 392, 494, 605, 798, 872
BseLI CCNNNNNNNGG 5 cut(s) 57, 342, 371, 383, 581
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 61, 409, 639
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 450
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 75, 97, 879
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 105, 173
BshFI GGCC 4 cut(s) 43, 104, 375, 530
BsiEI CGRYCG 2 cut(s) 105, 173
BsiSI CCGG 3 cut(s) 4, 98, 173
BslI CCNNNNNNNGG 5 cut(s) 57, 342, 371, 383, 581
BsnI GGCC 4 cut(s) 43, 104, 375, 530
Bsp143I GATC 4 cut(s) 152, 207, 233, 305
BspACI CCGC 6 cut(s) 83, 101, 252, 255, 365, 546
BspANI GGCC 4 cut(s) 43, 104, 375, 530
BspCNI CTCAG 3 cut(s) 62, 410, 638
BspFNI CGCG 1 cut(s) 200
BspPI GGATC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 38, 56, 299, 531
BssMI GATC 4 cut(s) 152, 207, 233, 305
BssNI GRCGYC 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 40, 58
Bst4CI ACNGT 2 cut(s) 782, 927
Bst6I CTCTTC 1 cut(s) 934
BstACI GRCGYC 1 cut(s) 349
BstAFI CTTAAG 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 70, 418, 625
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 6 cut(s) 165, 392, 494, 605, 798, 872
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 4 cut(s) 155, 210, 236, 308
BstMBI GATC 4 cut(s) 152, 207, 233, 305
BstMCI CGRYCG 2 cut(s) 105, 173
BstMWI GCNNNNNNNGC 2 cut(s) 8, 85
BstNI CCWGG 2 cut(s) 40, 58
BstSCI CCNGG 3 cut(s) 2, 38, 56
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 75, 97, 879
BstV2I GAAGAC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 338
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 43, 104, 375, 530
BtsCI GGATG 6 cut(s) 165, 392, 494, 605, 798, 872
BtsIMutI CAGTG 1 cut(s) 778
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 4 cut(s) 42, 249, 374, 528
Csp6I GTAC 1 cut(s) 459
CviAII CATG 3 cut(s) 383, 456, 564
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 3 cut(s) 70, 418, 625
DpnI GATC 4 cut(s) 154, 209, 235, 307
DpnII GATC 4 cut(s) 152, 207, 233, 305
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 934
EclXI CGGCCG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRII CCWGG 2 cut(s) 38, 56
FaeI CATG 3 cut(s) 386, 459, 567
FaiI YATR 8 cut(s) 124, 247, 384, 457, 498, 556, 565, 980
FatI CATG 3 cut(s) 382, 455, 563
FauI CCCGC 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 86, 89, 102, 255, 893
FokI GGATG 6 cut(s) 152, 399, 501, 612, 785, 879
Fsp4HI GCNGC 5 cut(s) 86, 89, 102, 255, 893
FspBI CTAG 1 cut(s) 844
GlaI GCGC 1 cut(s) 570
GluI GCNGC 5 cut(s) 86, 89, 102, 255, 893
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 4 cut(s) 43, 104, 375, 530
HapII CCGG 3 cut(s) 4, 98, 173
HhaI GCGC 1 cut(s) 571
Hin1I GRCGYC 1 cut(s) 349
Hin1II CATG 3 cut(s) 386, 459, 567
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 5 cut(s) 190, 286, 379, 666, 718
HpaII CCGG 3 cut(s) 4, 98, 173
HphI GGTGA 3 cut(s) 560, 798, 957
Hpy166II GTNNAC 1 cut(s) 812
Hpy188I TCNGA 8 cut(s) 27, 71, 170, 415, 535, 628, 686, 832
Hpy188III TCNNGA 3 cut(s) 114, 617, 636
Hpy8I GTNNAC 1 cut(s) 812
Hpy99I CGWCG 2 cut(s) 234, 351
HpyAV CCTTC 4 cut(s) 365, 402, 837, 924
HpyCH4III ACNGT 2 cut(s) 782, 927
HpyCH4IV ACGT 2 cut(s) 349, 461
HpyCH4V TGCA 4 cut(s) 91, 648, 728, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 8, 85
HpyF3I CTNAG 3 cut(s) 70, 418, 625
HpySE526I ACGT 2 cut(s) 349, 461
Hsp92I GRCGYC 1 cut(s) 349
Hsp92II CATG 3 cut(s) 386, 459, 567
HspAI GCGC 1 cut(s) 569
Kzo9I GATC 4 cut(s) 152, 207, 233, 305
Lsp1109I GCAGC 3 cut(s) 75, 97, 879
LweI GCATC 4 cut(s) 690, 807, 808, 905
MaeI CTAG 1 cut(s) 844
MaeII ACGT 2 cut(s) 349, 461
MaeIII GTNAC 3 cut(s) 161, 439, 875
MalI GATC 4 cut(s) 154, 209, 235, 307
MboI GATC 4 cut(s) 152, 207, 233, 305
MboII GAAGA 9 cut(s) 100, 405, 408, 411, 414, 417, 436, 439, 951
MfeI CAATTG 1 cut(s) 805
MluCI AATT 9 cut(s) 46, 309, 444, 643, 657, 805, 833, 848, 968
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 2 cut(s) 193, 393
MseI TTAA 3 cut(s) 580, 762, 967
MslI CAYNNNNRTG 2 cut(s) 336, 807
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 579
MspI CCGG 3 cut(s) 4, 98, 173
MspR9I CCNGG 3 cut(s) 4, 40, 58
MunI CAATTG 1 cut(s) 805
MvaI CCWGG 2 cut(s) 40, 58
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 8, 85
NciI CCSGG 1 cut(s) 4
NdeII GATC 4 cut(s) 152, 207, 233, 305
NlaIII CATG 3 cut(s) 386, 459, 567
NmeAIII GCCGAG 2 cut(s) 280, 913
OliI CACNNNNGTG 1 cut(s) 807
PcsI WCGNNNNNNNCGW 2 cut(s) 419, 885
PfeI GAWTC 4 cut(s) 190, 286, 379, 718
PkrI GCNGC 5 cut(s) 87, 90, 103, 256, 894
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 38, 56
PspGI CCWGG 2 cut(s) 38, 56
PspPI GGNCC 4 cut(s) 42, 249, 374, 528
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 2 cut(s) 336, 807
SaqAI TTAA 3 cut(s) 580, 762, 967
SatI GCNGC 5 cut(s) 86, 89, 102, 255, 893
Sau3AI GATC 4 cut(s) 152, 207, 233, 305
Sau96I GGNCC 4 cut(s) 42, 249, 374, 528
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 3 cut(s) 4, 40, 58
SfaNI GCATC 4 cut(s) 690, 807, 808, 905
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 336, 807
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 9 cut(s) 46, 309, 444, 643, 657, 805, 833, 848, 968
SsiI CCGC 6 cut(s) 83, 101, 252, 255, 365, 546
SspMI CTAG 1 cut(s) 844
StyD4I CCNGG 3 cut(s) 2, 38, 56
TaaI ACNGT 2 cut(s) 782, 927
TaiI ACGT 2 cut(s) 352, 464
TaqI TCGA 3 cut(s) 128, 229, 816
TasI AATT 9 cut(s) 46, 309, 444, 643, 657, 805, 833, 848, 968
TauI GCSGC 2 cut(s) 104, 257
TfiI GAWTC 4 cut(s) 190, 286, 379, 718
Tru1I TTAA 3 cut(s) 580, 762, 967
Tru9I TTAA 3 cut(s) 580, 762, 967
TscAI CASTG 1 cut(s) 785
TseI GCWGC 3 cut(s) 85, 88, 892
TspDTI ATGAA 3 cut(s) 371, 464, 491
TspRI CASTG 1 cut(s) 785
Vha464I CTTAAG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 657
XspI CTAG 1 cut(s) 844
ZraI GACGTC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.