No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000012610 |
| rosa_multiflora | Rmu_sc0021325.1_g000001 Rmu_sc0041399.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00182720 |
| rosa_rugosa | Rorug06G0176900 |
| rosa_samantha | Rh6BG290600 Rh6CG291200 Rh6DG283700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 15 |
| AciI | CCGC | 2 cut(s) | 28, 209 |
| AcsI | RAATTY | 1 cut(s) | 320 |
| AcuI | CTGAAG | 1 cut(s) | 476 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AfaI | GTAC | 1 cut(s) | 123 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 46, 244 |
| AflII | CTTAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 6 cut(s) | 20, 206, 259, 280, 524, 602 |
| AleI | CACNNNNGTG | 1 cut(s) | 470 |
| AluBI | AGCT | 3 cut(s) | 555, 565, 628 |
| AluI | AGCT | 3 cut(s) | 555, 565, 628 |
| AoxI | GGCC | 2 cut(s) | 36, 191 |
| ApeKI | GCWGC | 3 cut(s) | 363, 481, 555 |
| ApoI | RAATTY | 1 cut(s) | 320 |
| AspLEI | GCGC | 1 cut(s) | 234 |
| AspS9I | GGNCC | 2 cut(s) | 37, 191 |
| AsuHPI | GGTGA | 3 cut(s) | 223, 461, 620 |
| BauI | CACGAG | 1 cut(s) | 227 |
| BbvI | GCAGC | 3 cut(s) | 350, 468, 542 |
| BccI | CCATC | 4 cut(s) | 44, 87, 524, 605 |
| BfaI | CTAG | 1 cut(s) | 507 |
| BfoI | RGCGCY | 1 cut(s) | 235 |
| BfrI | CTTAAG | 1 cut(s) | 242 |
| BisI | GCNGC | 3 cut(s) | 364, 482, 556 |
| BlsI | GCNGC | 3 cut(s) | 365, 483, 557 |
| BmgT120I | GGNCC | 2 cut(s) | 37, 191 |
| BmsI | GCATC | 3 cut(s) | 353, 470, 568 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 46, 244 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 373 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 5 cut(s) | 55, 157, 268, 461, 535 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 46, 244 |
| BseMI | GCAATG | 2 cut(s) | 138, 373 |
| BseMII | CTCAG | 2 cut(s) | 72, 302 |
| BseRI | GAGGAG | 1 cut(s) | 113 |
| BseXI | GCAGC | 3 cut(s) | 350, 468, 542 |
| BsgI | GTGCAG | 1 cut(s) | 410 |
| BshFI | GGCC | 2 cut(s) | 38, 193 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 46, 244 |
| BsnI | GGCC | 2 cut(s) | 38, 193 |
| BspACI | CCGC | 2 cut(s) | 28, 209 |
| BspANI | GGCC | 2 cut(s) | 38, 193 |
| BspCNI | CTCAG | 2 cut(s) | 73, 301 |
| BspTI | CTTAAG | 1 cut(s) | 242 |
| BsrDI | GCAATG | 2 cut(s) | 138, 373 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssSI | CACGAG | 1 cut(s) | 227 |
| Bst2BI | CACGAG | 1 cut(s) | 227 |
| Bst4CI | ACNGT | 1 cut(s) | 590 |
| Bst6I | CTCTTC | 1 cut(s) | 597 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstAFI | CTTAAG | 1 cut(s) | 242 |
| BstDEI | CTNAG | 2 cut(s) | 81, 288 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 5 cut(s) | 55, 157, 268, 461, 535 |
| BstH2I | RGCGCY | 1 cut(s) | 235 |
| BstHHI | GCGC | 1 cut(s) | 234 |
| BstV1I | GCAGC | 3 cut(s) | 350, 468, 542 |
| BsuRI | GGCC | 2 cut(s) | 38, 193 |
| BtsCI | GGATG | 5 cut(s) | 55, 157, 268, 461, 535 |
| CfoI | GCGC | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 2 cut(s) | 37, 191 |
| Csp6I | GTAC | 1 cut(s) | 122 |
| CviAII | CATG | 2 cut(s) | 46, 119 |
| CviJI | RGCY | 5 cut(s) | 38, 193, 555, 565, 628 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 193, 555, 565, 628 |
| CviQI | GTAC | 1 cut(s) | 122 |
| DdeI | CTNAG | 2 cut(s) | 81, 288 |
| DraI | TTTAAA | 1 cut(s) | 426 |
| Eam1104I | CTCTTC | 1 cut(s) | 597 |
| EarI | CTCTTC | 1 cut(s) | 597 |
| Eco57I | CTGAAG | 1 cut(s) | 476 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 242 |
| FaeI | CATG | 2 cut(s) | 49, 122 |
| FaiI | YATR | 5 cut(s) | 47, 120, 161, 219, 643 |
| FatI | CATG | 2 cut(s) | 45, 118 |
| FauI | CCCGC | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 3 cut(s) | 364, 482, 556 |
| FokI | GGATG | 5 cut(s) | 62, 164, 275, 448, 542 |
| Fsp4HI | GCNGC | 3 cut(s) | 364, 482, 556 |
| FspBI | CTAG | 1 cut(s) | 507 |
| GlaI | GCGC | 1 cut(s) | 233 |
| GluI | GCNGC | 3 cut(s) | 364, 482, 556 |
| HaeII | RGCGCY | 1 cut(s) | 235 |
| HaeIII | GGCC | 2 cut(s) | 38, 193 |
| HhaI | GCGC | 1 cut(s) | 234 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| Hin1II | CATG | 2 cut(s) | 49, 122 |
| Hin6I | GCGC | 1 cut(s) | 232 |
| HinP1I | GCGC | 1 cut(s) | 232 |
| HindIII | AAGCTT | 1 cut(s) | 626 |
| HinfI | GANTC | 3 cut(s) | 42, 329, 381 |
| HphI | GGTGA | 3 cut(s) | 223, 461, 620 |
| Hpy166II | GTNNAC | 1 cut(s) | 475 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 198, 291, 349, 495 |
| Hpy188III | TCNNGA | 2 cut(s) | 280, 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 475 |
| Hpy99I | CGWCG | 1 cut(s) | 14 |
| HpyAV | CCTTC | 4 cut(s) | 28, 65, 500, 587 |
| HpyCH4III | ACNGT | 1 cut(s) | 590 |
| HpyCH4IV | ACGT | 2 cut(s) | 12, 124 |
| HpyCH4V | TGCA | 4 cut(s) | 311, 366, 391, 558 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 288 |
| HpySE526I | ACGT | 2 cut(s) | 12, 124 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| Hsp92II | CATG | 2 cut(s) | 49, 122 |
| HspAI | GCGC | 1 cut(s) | 232 |
| LpnPI | CCDG | 4 cut(s) | 126, 238, 312, 596 |
| Lsp1109I | GCAGC | 3 cut(s) | 350, 468, 542 |
| LweI | GCATC | 3 cut(s) | 353, 470, 568 |
| MaeI | CTAG | 1 cut(s) | 507 |
| MaeII | ACGT | 2 cut(s) | 12, 124 |
| MaeIII | GTNAC | 2 cut(s) | 102, 538 |
| MboII | GAAGA | 8 cut(s) | 68, 71, 74, 77, 80, 99, 102, 614 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MluCI | AATT | 7 cut(s) | 107, 306, 320, 468, 496, 511, 631 |
| MlyI | GAGTC | 1 cut(s) | 338 |
| MmeI | TCCRAC | 1 cut(s) | 56 |
| MnlI | CCTC | 7 cut(s) | 91, 204, 248, 295, 368, 451, 598 |
| MseI | TTAA | 3 cut(s) | 243, 425, 630 |
| MslI | CAYNNNNRTG | 1 cut(s) | 470 |
| MspCI | CTTAAG | 1 cut(s) | 242 |
| MunI | CAATTG | 1 cut(s) | 468 |
| NlaIII | CATG | 2 cut(s) | 49, 122 |
| NmeAIII | GCCGAG | 1 cut(s) | 576 |
| OliI | CACNNNNGTG | 1 cut(s) | 470 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 82, 548 |
| PfeI | GAWTC | 2 cut(s) | 42, 381 |
| PkrI | GCNGC | 3 cut(s) | 365, 483, 557 |
| PleI | GAGTC | 1 cut(s) | 337 |
| PpsI | GAGTC | 1 cut(s) | 337 |
| PspPI | GGNCC | 2 cut(s) | 37, 191 |
| RsaI | GTAC | 1 cut(s) | 123 |
| RsaNI | GTAC | 1 cut(s) | 122 |
| RseI | CAYNNNNRTG | 1 cut(s) | 470 |
| SaqAI | TTAA | 3 cut(s) | 243, 425, 630 |
| SatI | GCNGC | 3 cut(s) | 364, 482, 556 |
| Sau96I | GGNCC | 2 cut(s) | 37, 191 |
| SchI | GAGTC | 1 cut(s) | 338 |
| SetI | ASST | 9 cut(s) | 15, 76, 127, 249, 492, 557, 567, 598, 630 |
| SfaNI | GCATC | 3 cut(s) | 353, 470, 568 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 470 |
| SmlI | CTYRAG | 1 cut(s) | 242 |
| SmoI | CTYRAG | 1 cut(s) | 242 |
| Sse9I | AATT | 7 cut(s) | 107, 306, 320, 468, 496, 511, 631 |
| SsiI | CCGC | 2 cut(s) | 28, 209 |
| SspMI | CTAG | 1 cut(s) | 507 |
| TaaI | ACNGT | 1 cut(s) | 590 |
| TaiI | ACGT | 2 cut(s) | 15, 127 |
| TasI | AATT | 7 cut(s) | 107, 306, 320, 468, 496, 511, 631 |
| TfiI | GAWTC | 2 cut(s) | 42, 381 |
| Tru1I | TTAA | 3 cut(s) | 243, 425, 630 |
| Tru9I | TTAA | 3 cut(s) | 243, 425, 630 |
| TseI | GCWGC | 3 cut(s) | 363, 481, 555 |
| TspDTI | ATGAA | 3 cut(s) | 34, 127, 154 |
| Vha464I | CTTAAG | 1 cut(s) | 242 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 242 |
| XapI | RAATTY | 1 cut(s) | 320 |
| XspI | CTAG | 1 cut(s) | 507 |
| ZraI | GACGTC | 1 cut(s) | 13 |