Rorug06G0176900

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0019471
Physical Location & Seq
Forward (+)
27902417 .. 27905277
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0176900.1

Sequence Viewer

Length: 1170 bp
ATGGGAAGCACAACAATGACCACCAATTGTAGTAACTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACAAGGCGCGCAAGTACAAACTCAAAGGCACTTACAATGACGTCAATAACATGAATCACTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTCCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCCTCAGTGCTTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAACCACTCTGGTAAAGGCATAACGTATGGGGAACTGCTCGACTTCATGTTTGATCAAATTCAAAGGATTAATGGGGAAAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

389

Amino Acids

43.52

Weight (kDa)

8.62

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 111 - 350 2.1e-29 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019471)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012610
rosa_multiflora Rmu_sc0021325.1_g000001 Rmu_sc0041399.1_g000001
rosa_roxburghii Rroxscaffold_7G00182720
rosa_rugosa Rorug06G0176900
rosa_samantha Rh6BG290600 Rh6CG291200 Rh6DG283700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccB1I GGYRCC 2 cut(s) 549, 944
AccI GTMKAC 2 cut(s) 792, 1146
AccII CGCG 2 cut(s) 339, 370
AciI CCGC 1 cut(s) 351
AclWI GGATC 2 cut(s) 244, 673
AcsI RAATTY 2 cut(s) 1035, 1157
AcyI GRCGYC 2 cut(s) 402, 729
AfaI GTAC 2 cut(s) 377, 853
AfiI CCNNNNNNNGG 3 cut(s) 534, 721, 836
AgsI TTSAA 4 cut(s) 613, 702, 968, 1040
AjnI CCWGG 1 cut(s) 552
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 6 cut(s) 149, 206, 213, 312, 324, 496
AluI AGCT 6 cut(s) 149, 206, 213, 312, 324, 496
Alw26I GTCTC 3 cut(s) 128, 193, 635
AlwI GGATC 2 cut(s) 244, 673
ApeKI GCWGC 5 cut(s) 105, 178, 181, 184, 905
ApoI RAATTY 2 cut(s) 1035, 1157
ArsI GACNNNNNNTTYG 2 cut(s) 1010, 1042
AseI ATTAAT 2 cut(s) 219, 1047
AspLEI GCGC 4 cut(s) 339, 341, 370, 372
AsuHPI GGTGA 4 cut(s) 69, 234, 270, 276
BanI GGYRCC 2 cut(s) 549, 944
BbsI GAAGAC 2 cut(s) 897, 1140
BbvI GCAGC 5 cut(s) 92, 190, 193, 196, 917
BccI CCATC 4 cut(s) 201, 253, 283, 713
BcgI CGANNNNNNTGC 4 cut(s) 176, 210, 546, 580
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 2 cut(s) 426, 1030
BcoDI GTCTC 3 cut(s) 128, 193, 635
BfaI CTAG 1 cut(s) 843
BisI GCNGC 5 cut(s) 106, 179, 182, 185, 906
BlsI GCNGC 5 cut(s) 107, 180, 183, 186, 907
Bme1390I CCNGG 1 cut(s) 554
BmiI GGNNCC 2 cut(s) 551, 946
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 2 cut(s) 742, 1049
BpiI GAAGAC 2 cut(s) 897, 1140
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 1 cut(s) 1054
BpuEI CTTGAG 2 cut(s) 704, 1099
BsaHI GRCGYC 2 cut(s) 402, 729
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 3 cut(s) 534, 721, 836
BseBI CCWGG 1 cut(s) 554
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 3 cut(s) 534, 721, 836
BseMII CTCAG 2 cut(s) 597, 892
BsePI GCGCGC 2 cut(s) 337, 368
BseXI GCAGC 5 cut(s) 92, 190, 193, 196, 917
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 339, 370
BshNI GGYRCC 2 cut(s) 549, 944
BslI CCNNNNNNNGG 3 cut(s) 534, 721, 836
BsmAI GTCTC 3 cut(s) 128, 193, 635
BsmBI CGTCTC 2 cut(s) 128, 193
BsmI GAATGC 1 cut(s) 456
Bsp143I GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
BspACI CCGC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 596, 891
BspFNI CGCG 2 cut(s) 339, 370
BspLI GGNNCC 2 cut(s) 551, 946
BspPI GGATC 2 cut(s) 244, 673
BspT107I GGYRCC 2 cut(s) 549, 944
BssHII GCGCGC 2 cut(s) 337, 368
BssMI GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
BssNAI GTATAC 1 cut(s) 1147
BssNI GRCGYC 2 cut(s) 402, 729
Bst1107I GTATAC 1 cut(s) 1147
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 266, 282, 288
Bst6I CTCTTC 1 cut(s) 663
BstACI GRCGYC 2 cut(s) 402, 729
BstC8I GCNNGC 4 cut(s) 147, 339, 370, 886
BstDEI CTNAG 2 cut(s) 583, 878
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 339, 370
BstHHI GCGC 4 cut(s) 339, 341, 370, 372
BstKTI GATC 6 cut(s) 239, 429, 681, 781, 928, 1033
BstMAI GTCTC 3 cut(s) 128, 193, 635
BstMBI GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 184, 336
BstNI CCWGG 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 1 cut(s) 552
BstUI CGCG 2 cut(s) 339, 370
BstV1I GCAGC 5 cut(s) 92, 190, 193, 196, 917
BstV2I GAAGAC 2 cut(s) 897, 1140
BstZ17I GTATAC 1 cut(s) 1147
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 886
Cac8I GCNNGC 4 cut(s) 147, 339, 370, 886
CfoI GCGC 4 cut(s) 339, 341, 370, 372
CseI GACGC 1 cut(s) 718
Csp6I GTAC 2 cut(s) 376, 852
CviAII CATG 6 cut(s) 412, 664, 676, 740, 949, 1024
CviQI GTAC 2 cut(s) 376, 852
DdeI CTNAG 2 cut(s) 583, 878
DpnI GATC 6 cut(s) 238, 428, 680, 780, 927, 1032
DpnII GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco32I GATATC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 552
EcoRV GATATC 1 cut(s) 694
Esp3I CGTCTC 2 cut(s) 128, 193
FaeI CATG 6 cut(s) 415, 667, 679, 743, 952, 1027
FatI CATG 6 cut(s) 411, 663, 675, 739, 948, 1023
FbaI TGATCA 2 cut(s) 426, 1030
FblI GTMKAC 2 cut(s) 792, 1146
Fnu4HI GCNGC 5 cut(s) 106, 179, 182, 185, 906
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 5 cut(s) 106, 179, 182, 185, 906
FspBI CTAG 1 cut(s) 843
GlaI GCGC 4 cut(s) 338, 340, 369, 371
GluI GCNGC 5 cut(s) 106, 179, 182, 185, 906
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 1054
HgaI GACGC 1 cut(s) 718
HhaI GCGC 4 cut(s) 339, 341, 370, 372
Hin1I GRCGYC 2 cut(s) 402, 729
Hin1II CATG 6 cut(s) 415, 667, 679, 743, 952, 1027
Hin6I GCGC 4 cut(s) 337, 339, 368, 370
HinP1I GCGC 4 cut(s) 337, 339, 368, 370
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 5 cut(s) 415, 499, 563, 594, 1074
HphI GGTGA 4 cut(s) 69, 234, 270, 276
Hpy166II GTNNAC 4 cut(s) 628, 712, 793, 1147
Hpy188I TCNGA 5 cut(s) 129, 198, 472, 599, 1132
Hpy188III TCNNGA 5 cut(s) 585, 656, 776, 1071, 1078
Hpy8I GTNNAC 4 cut(s) 628, 712, 793, 1147
Hpy99I CGWCG 3 cut(s) 256, 623, 641
HpyAV CCTTC 4 cut(s) 164, 473, 811, 843
HpyCH4III ACNGT 3 cut(s) 266, 282, 288
HpyCH4IV ACGT 3 cut(s) 402, 789, 1001
HpyCH4V TGCA 2 cut(s) 39, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 336
HpyF3I CTNAG 2 cut(s) 583, 878
HpySE526I ACGT 3 cut(s) 402, 789, 1001
Hsp92I GRCGYC 2 cut(s) 402, 729
Hsp92II CATG 6 cut(s) 415, 667, 679, 743, 952, 1027
HspAI GCGC 4 cut(s) 337, 339, 368, 370
Ksp22I TGATCA 2 cut(s) 426, 1030
Kzo9I GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
Lsp1109I GCAGC 5 cut(s) 92, 190, 193, 196, 917
LweI GCATC 2 cut(s) 742, 1049
MaeI CTAG 1 cut(s) 843
MaeII ACGT 3 cut(s) 402, 789, 1001
MaeIII GTNAC 5 cut(s) 32, 91, 282, 355, 730
MalI GATC 6 cut(s) 238, 428, 680, 780, 927, 1032
MboI GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
MboII GAAGA 7 cut(s) 485, 488, 523, 680, 902, 1145, 1165
MfeI CAATTG 1 cut(s) 25
MluCI AATT 8 cut(s) 25, 220, 697, 771, 870, 969, 1035, 1157
MlyI GAGTC 2 cut(s) 493, 588
MmeI TCCRAC 2 cut(s) 95, 622
MseI TTAA 5 cut(s) 123, 219, 314, 975, 1047
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 2 cut(s) 339, 370
MwoI GCNNNNNNNGC 2 cut(s) 184, 336
NdeII GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
NlaIII CATG 6 cut(s) 415, 667, 679, 743, 952, 1027
NlaIV GGNNCC 2 cut(s) 551, 946
NmuCI GTSAC 3 cut(s) 282, 355, 730
NspI RCATGY 1 cut(s) 743
PauI GCGCGC 2 cut(s) 337, 368
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 415, 563, 1074
PkrI GCNGC 5 cut(s) 107, 180, 183, 186, 907
PleI GAGTC 2 cut(s) 493, 588
PpsI GAGTC 2 cut(s) 493, 588
PshBI ATTAAT 2 cut(s) 219, 1047
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 551, 946
PteI GCGCGC 2 cut(s) 337, 368
PvuII CAGCTG 1 cut(s) 213
RsaI GTAC 2 cut(s) 377, 853
RsaNI GTAC 2 cut(s) 376, 852
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 5 cut(s) 123, 219, 314, 975, 1047
SatI GCNGC 5 cut(s) 106, 179, 182, 185, 906
Sau3AI GATC 6 cut(s) 236, 426, 678, 778, 925, 1030
SchI GAGTC 2 cut(s) 493, 588
ScrFI CCNGG 1 cut(s) 554
SfaNI GCATC 2 cut(s) 742, 1049
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 719, 1078
SmoI CTYRAG 2 cut(s) 719, 1078
Sse9I AATT 8 cut(s) 25, 220, 697, 771, 870, 969, 1035, 1157
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 266, 282, 288
TaiI ACGT 3 cut(s) 405, 792, 1004
TaqI TCGA 5 cut(s) 636, 928, 1017, 1093, 1140
TasI AATT 8 cut(s) 25, 220, 697, 771, 870, 969, 1035, 1157
TatI WGTACW 2 cut(s) 375, 851
TfiI GAWTC 3 cut(s) 415, 563, 1074
Tru1I TTAA 5 cut(s) 123, 219, 314, 975, 1047
Tru9I TTAA 5 cut(s) 123, 219, 314, 975, 1047
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 3 cut(s) 282, 355, 730
TseI GCWGC 5 cut(s) 105, 178, 181, 184, 905
Tsp45I GTSAC 3 cut(s) 282, 355, 730
TspDTI ATGAA 4 cut(s) 428, 652, 953, 1012
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 1 cut(s) 886
VspI ATTAAT 2 cut(s) 219, 1047
XapI RAATTY 2 cut(s) 1035, 1157
XceI RCATGY 1 cut(s) 743
XmiI GTMKAC 2 cut(s) 792, 1146
XspI CTAG 1 cut(s) 843
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.