Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023161.1

Orthogroup ID

OG0006774

Physical Location & Seq

Genomic Coordinates Reverse (-)

2607 .. 3421

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023161.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgaagactgatgacgatgcatttgtccgtgtggatgaagtgctagcttccttaaacaggatcaaggtcactagtggcttgctttatggactcattaactcagattcccaacctcatcgaaatccagacagcaagtggtatatcagccctgaggaatggcgtgaagaaaagtacccaccttgggcacatggtcctggctatgtggtgtcaagtgacattgcaaaggcagtttcccagcggtacaaaaaaggaagtttaaagatgtttaagctagaagatgtggcgatgggcatctgggttgcagatatgaaaaaggagggtttgaacgtacggtatgagaaggaagagaaagtctacaacgagggttgcaaagatggctatatcgttgcccattaccaaggtccgagggagatgctgtgtctctggcagaaaattcaagaaggacaagttgctaaatgctgtgggggtgaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010488 GO:0010493 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

158

Amino Acids

18.08

Weight (kDa)

6.32

Isoelectric Point (pI)

23.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26810 AT1G26810
fragaria_vesca	FvH4_4g31270 FvH4_4g31270 FvH4_4g31270 FvH4_4g31270
malus_domestica	MD13G1071300.v1.1 MD16G1072100.v1.1
prunus_persica	Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1
pyrus_communis	pycom13g06400 pycom16g06250
rosa_chinensis	RchiOBHm_Chr4g0439721
rosa_laevigata	RLG00000006242
rosa_multiflora	Rmu_co8406519.1_g000001 Rmu_sc0023161.1_g000002 Rmu_ssc0000029.1_g000012
rosa_roxburghii	Rroxscaffold_5G00380660
rosa_rugosa	Rorug04G0321000
rosa_samantha	Rh4AG372000 Rh4BG383900 Rh4CG398600 Rh4DG378500
rosa_wichuraiana	Rw4G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	3 cut(s)	173, 242, 330
AfiI	CCNNNNNNNGG	2 cut(s)	57, 181
AgsI	TTSAA	2 cut(s)	325, 437
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	47, 271
AluI	AGCT	2 cut(s)	47, 271
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	432
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	191, 401
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	191, 401
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	2 cut(s)	280, 368
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	3 cut(s)	44, 72, 272
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	2 cut(s)	191, 401
BmgT120I	GGNCC	2 cut(s)	191, 401
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	7, 300, 402
BmtI	GCTAGC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	179, 397, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 181
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	179, 397, 404
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	57, 181
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	114, 141
BseSI	GKGCMC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	234
BsiWI	CGTACG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	57, 181
BsmAI	GTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	113, 142
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	179, 397, 404
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	179, 397
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	45, 80
BstDEI	CTNAG	2 cut(s)	100, 150
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	45, 80
Cfr13I	GGNCC	2 cut(s)	191, 401
Csp6I	GTAC	3 cut(s)	172, 241, 329
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	6 cut(s)	47, 78, 147, 198, 271, 378
CviKI_1	RGCY	6 cut(s)	47, 78, 147, 198, 271, 378
CviQI	GTAC	3 cut(s)	172, 241, 329
DdeI	CTNAG	2 cut(s)	100, 150
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraI	TTTAAA	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	179, 397
Eco47I	GGWCC	2 cut(s)	191, 401
Eco81I	CCTNAGG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	179, 397
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	179, 397
FaeI	CATG	1 cut(s)	191
FaiI	YATR	8 cut(s)	87, 141, 189, 201, 308, 336, 381, 475
FatI	CATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	354
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	3 cut(s)	44, 72, 272
GsaI	CCCAGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	2 cut(s)	90, 104
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	103, 405
Hpy188III	TCNNGA	2 cut(s)	125, 437
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	334, 434
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	4 cut(s)	20, 221, 302, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	100, 150
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	8 cut(s)	43, 138, 162, 180, 207, 248, 280, 409
LweI	GCATC	3 cut(s)	7, 300, 402
MaeI	CTAG	3 cut(s)	44, 72, 272
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	67, 212
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	16, 176, 287, 356
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	123, 145, 310, 355, 399, 463
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	4 cut(s)	53, 96, 257, 267
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	60
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	67, 212
NsiI	ATGCAT	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	328
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	191, 401
RsaI	GTAC	3 cut(s)	173, 242, 330
RsaNI	GTAC	3 cut(s)	172, 241, 329
SaqAI	TTAA	4 cut(s)	53, 96, 257, 267
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	191, 401
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	49, 69, 115, 181, 273, 330, 403, 474
SfaNI	GCATC	3 cut(s)	7, 300, 402
SinI	GGWCC	2 cut(s)	191, 401
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	3 cut(s)	44, 72, 272
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	179, 397
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	4 cut(s)	53, 96, 257, 267
Tru9I	TTAA	4 cut(s)	53, 96, 257, 267
TseFI	GTSAC	2 cut(s)	67, 212
Tsp45I	GTSAC	2 cut(s)	67, 212
TspDTI	ATGAA	3 cut(s)	17, 51, 323
TspGWI	ACGGA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	191, 401
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	3 cut(s)	44, 72, 272
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.