Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000029.1

Orthogroup ID

OG0006774

Physical Location & Seq

Genomic Coordinates Forward (+)

66010 .. 66891

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000029.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgacgatcaataagttggagattccggctcagagcttttcctgtaattttgagatcaccagaatgaagaaatcctacggtggtattgtggctgcatccttattcatgctgctagtcctcagatatgccatcacgaactatcccattggtgatagttacttgaccaatgtactgtactccaattctactaatcctgttggtattaatcctcttgaatggttgaatactgctccacctgcagttcagaatccagagaatgtatctcaagtggtttctgctgagaaaatagtctctagtctctttgctcgtaggaatctatccaatgaagagcagcaaactttgaacacatggaaacttctgaagaatcttatcaaccaaggtcagggtttgcctaatgctgtcgatgctataaaggaagctggaggtgcatggaatagccttatggattcagttgaagagcaaagacttggttatactaatgaaagttcaccagggagaacgaagcagtgtccgcattttcttagtaaaatgaatgggacagaaattgataatagtggttacaagttgcgggttccttgtggcctcactcaaggttcgtcgattacggtcatcggtatcccaaacggaattcttggcagtttccggatcgatttgacaggggagccccttccaggggaacctgaaccacccattatattgcattacaatgttaggctaagcggtgataagctaactgaggaccctgtaattgtccaaaacagctggactattgctcatgattggggtgatgaggagcgctgcccgtctcccactcctgaaaagaacaagaaaggtagattacatgcctatggcctcattttctatttgtcgagtaacacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010488 GO:0010493 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

293

Amino Acids

32.28

Weight (kDa)

5.87

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26810 AT1G26810
fragaria_vesca	FvH4_4g31270 FvH4_4g31270 FvH4_4g31270 FvH4_4g31270
malus_domestica	MD13G1071300.v1.1 MD16G1072100.v1.1
prunus_persica	Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1
pyrus_communis	pycom13g06400 pycom16g06250
rosa_chinensis	RchiOBHm_Chr4g0439721
rosa_laevigata	RLG00000006242
rosa_multiflora	Rmu_co8406519.1_g000001 Rmu_sc0023161.1_g000002 Rmu_ssc0000029.1_g000012
rosa_roxburghii	Rroxscaffold_5G00380660
rosa_rugosa	Rorug04G0321000
rosa_samantha	Rh4AG372000 Rh4BG383900 Rh4CG398600 Rh4DG378500
rosa_wichuraiana	Rw4G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	3 cut(s)	512, 568, 720
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	171, 176
AfeI	AGCGCT	1 cut(s)	797
AfiI	CCNNNNNNNGG	4 cut(s)	382, 671, 672, 673
AgsI	TTSAA	4 cut(s)	215, 223, 343, 455
AjnI	CCWGG	2 cut(s)	490, 670
AluBI	AGCT	4 cut(s)	36, 419, 730, 762
AluI	AGCT	4 cut(s)	36, 419, 730, 762
Alw26I	GTCTC	3 cut(s)	295, 302, 810
AlwI	GGATC	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	642
Aor51HI	AGCGCT	1 cut(s)	797
AoxI	GGCC	2 cut(s)	580, 850
ApeKI	GCWGC	4 cut(s)	92, 109, 331, 798
ApoI	RAATTY	1 cut(s)	627
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	798
AspS9I	GGNCC	1 cut(s)	739
AsuHPI	GGTGA	5 cut(s)	49, 161, 480, 734, 797
AvaII	GGWCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	666
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbvI	GCAGC	4 cut(s)	79, 96, 343, 785
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	492, 672
BciVI	GTATCC	1 cut(s)	626
BcoDI	GTCTC	3 cut(s)	295, 302, 810
BfaI	CTAG	2 cut(s)	113, 294
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	799
BfuAI	ACCTGC	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	4 cut(s)	93, 110, 332, 799
BlpI	GCTNAGC	1 cut(s)	716
BlsI	GCNGC	4 cut(s)	94, 111, 333, 800
Bme1390I	CCNGG	2 cut(s)	492, 672
Bme18I	GGWCC	1 cut(s)	739
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	4 cut(s)	573, 663, 678, 741
BmrFI	CCNGG	2 cut(s)	492, 672
BmsI	GCATC	2 cut(s)	104, 394
BpmI	CTGGAG	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	716
BpuEI	CTTGAG	2 cut(s)	249, 573
Bsa29I	ATCGAT	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	376, 491, 671
BsaWI	WCCGGW	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 671, 672, 673
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	492, 672
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	376, 491, 671
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	382, 671, 672, 673
BseMII	CTCAG	4 cut(s)	44, 133, 270, 726
BseRI	GAGGAG	1 cut(s)	806
BseXI	GCAGC	4 cut(s)	79, 96, 343, 785
BshFI	GGCC	2 cut(s)	582, 852
BshVI	ATCGAT	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	26, 643
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	4 cut(s)	382, 671, 672, 673
BsmAI	GTCTC	3 cut(s)	295, 302, 810
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	582, 852
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	6, 54, 645
Bsp1720I	GCTNAGC	1 cut(s)	716
BspACI	CCGC	3 cut(s)	512, 568, 720
BspANI	GGCC	2 cut(s)	582, 852
BspCNI	CTCAG	4 cut(s)	43, 132, 271, 727
BspDI	ATCGAT	1 cut(s)	648
BspEI	TCCGGA	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	4 cut(s)	573, 663, 678, 741
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	2 cut(s)	321, 450
BssECI	CCNNGG	3 cut(s)	376, 491, 671
BssMI	GATC	3 cut(s)	6, 54, 645
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	492, 672
Bst4CI	ACNGT	3 cut(s)	80, 174, 607
Bst6I	CTCTTC	2 cut(s)	321, 450
BstDEI	CTNAG	6 cut(s)	30, 119, 279, 521, 716, 735
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	798
BstKTI	GATC	3 cut(s)	9, 57, 648
BstMAI	GTCTC	3 cut(s)	295, 302, 810
BstMBI	GATC	3 cut(s)	6, 54, 645
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 404, 425, 511
BstNI	CCWGG	2 cut(s)	492, 672
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	2 cut(s)	490, 670
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	79, 96, 343, 785
Bsu15I	ATCGAT	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	582, 852
BsuTUI	ATCGAT	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	775
CfoI	GCGC	1 cut(s)	798
Cfr13I	GGNCC	1 cut(s)	739
ClaI	ATCGAT	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	170, 175
CviAII	CATG	5 cut(s)	106, 348, 429, 776, 842
CviQI	GTAC	2 cut(s)	170, 175
DdeI	CTNAG	6 cut(s)	30, 119, 279, 521, 716, 735
DpnI	GATC	3 cut(s)	8, 56, 647
DpnII	GATC	3 cut(s)	6, 54, 645
Eam1104I	CTCTTC	2 cut(s)	321, 450
EarI	CTCTTC	2 cut(s)	321, 450
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	739
Eco47III	AGCGCT	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	2 cut(s)	490, 670
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	5 cut(s)	109, 351, 432, 779, 845
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	5 cut(s)	105, 347, 428, 775, 841
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	93, 110, 332, 799
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	4 cut(s)	93, 110, 332, 799
FspBI	CTAG	2 cut(s)	113, 294
GlaI	GCGC	1 cut(s)	797
GluI	GCNGC	4 cut(s)	93, 110, 332, 799
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	2 cut(s)	582, 852
HapII	CCGG	2 cut(s)	26, 643
HhaI	GCGC	1 cut(s)	798
Hin1II	CATG	5 cut(s)	109, 351, 432, 779, 845
Hin6I	GCGC	1 cut(s)	796
HinP1I	GCGC	1 cut(s)	796
HinfI	GANTC	5 cut(s)	22, 247, 313, 364, 446
HpaII	CCGG	2 cut(s)	26, 643
HphI	GGTGA	5 cut(s)	49, 161, 480, 734, 797
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	4 cut(s)	33, 122, 246, 360
Hpy188III	TCNNGA	6 cut(s)	133, 212, 251, 643, 776, 815
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	1 cut(s)	601
HpyAV	CCTTC	1 cut(s)	677
HpyCH4III	ACNGT	3 cut(s)	80, 174, 607
HpyCH4V	TGCA	4 cut(s)	95, 239, 428, 700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 404, 425, 511
HpyF3I	CTNAG	6 cut(s)	30, 119, 279, 521, 716, 735
Hsp92II	CATG	5 cut(s)	109, 351, 432, 779, 845
HspAI	GCGC	1 cut(s)	796
Kpn2I	TCCGGA	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	6, 54, 645
LguI	GCTCTTC	2 cut(s)	321, 450
LmnI	GCTCC	3 cut(s)	235, 661, 793
Lsp1109I	GCAGC	4 cut(s)	79, 96, 343, 785
LweI	GCATC	2 cut(s)	104, 394
MaeI	CTAG	2 cut(s)	113, 294
MaeIII	GTNAC	3 cut(s)	155, 557, 872
MalI	GATC	3 cut(s)	8, 56, 647
MboI	GATC	3 cut(s)	6, 54, 645
MboII	GAAGA	4 cut(s)	79, 338, 373, 467
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	5 cut(s)	46, 181, 543, 627, 747
MnlI	CCTC	7 cut(s)	128, 219, 416, 593, 730, 784, 863
MroI	TCCGGA	1 cut(s)	642
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	3 cut(s)	62, 705, 846
MspA1I	CMGCKG	1 cut(s)	762
MspI	CCGG	2 cut(s)	26, 643
MspR9I	CCNGG	2 cut(s)	492, 672
MvaI	CCWGG	2 cut(s)	492, 672
MwoI	GCNNNNNNNGC	4 cut(s)	236, 404, 425, 511
NdeII	GATC	3 cut(s)	6, 54, 645
NlaIII	CATG	5 cut(s)	109, 351, 432, 779, 845
NlaIV	GGNNCC	4 cut(s)	573, 663, 678, 741
NspI	RCATGY	1 cut(s)	845
PagI	TCATGA	1 cut(s)	775
PaqCI	CACCTGC	1 cut(s)	244
PciSI	GCTCTTC	2 cut(s)	321, 450
PfeI	GAWTC	5 cut(s)	22, 247, 313, 364, 446
PkrI	GCNGC	4 cut(s)	94, 111, 333, 800
PpuMI	RGGWCCY	1 cut(s)	739
PshBI	ATTAAT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	2 cut(s)	490, 670
PspGI	CCWGG	2 cut(s)	490, 670
PspN4I	GGNNCC	4 cut(s)	573, 663, 678, 741
PspPI	GGNCC	1 cut(s)	739
PspPPI	RGGWCCY	1 cut(s)	739
PstI	CTGCAG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	762
RsaI	GTAC	2 cut(s)	171, 176
RsaNI	GTAC	2 cut(s)	170, 175
RseI	CAYNNNNRTG	3 cut(s)	62, 705, 846
SapI	GCTCTTC	2 cut(s)	321, 450
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	4 cut(s)	93, 110, 332, 799
Sau3AI	GATC	3 cut(s)	6, 54, 645
Sau96I	GGNCC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	492, 672
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	104, 394
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	3 cut(s)	62, 705, 846
SmlI	CTYRAG	2 cut(s)	264, 588
SmoI	CTYRAG	2 cut(s)	264, 588
Sse9I	AATT	5 cut(s)	46, 181, 543, 627, 747
SsiI	CCGC	3 cut(s)	512, 568, 720
SspMI	CTAG	2 cut(s)	113, 294
StyD4I	CCNGG	2 cut(s)	490, 670
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	80, 174, 607
TaqI	TCGA	4 cut(s)	402, 599, 648, 869
TasI	AATT	5 cut(s)	46, 181, 543, 627, 747
TatI	WGTACW	2 cut(s)	169, 174
TfiI	GAWTC	5 cut(s)	22, 247, 313, 364, 446
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	512
TseI	GCWGC	4 cut(s)	92, 109, 331, 798
TspDTI	ATGAA	5 cut(s)	80, 94, 339, 495, 545
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	739
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	845
XspI	CTAG	2 cut(s)	113, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.