Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006774

Physical Location & Seq

Genomic Coordinates Reverse (-)

49470919 .. 49473868

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAATGGCACCTGTTCTGGTTCCAGCTTCAGCTAAGTTTAAACACTTTGCCTTGAGTTCAAGAAAAAACCAGTTCAGGGTCTCTGCTGCAGCAATGGCTACAGGTGGAACCCAGAGCAGAACTAAAGTCATAGATTCACATCTCCATGTGTGGGCTTCACCTCAAGAGGCTGCTGATAAATATCCTTACTTTCCTGGGCAAGAACCCACTTTGCCTGGAGATGTCGATTTATTGCTCAAGTGTATGGAAGAAGCACGTGTTGACGGTGCACTTATTGTGCAGCCTATTAATCACAAATTCGATCATTCTTTGGTGACAAGTGTGTTGAAGAAGTATCCATCTAAATTTGTTGGTTGTTGCCTTGCAAATCCAGCTGAAGATGGGAGTGGGGTTAAGCAGCTTGAACATCTTATTTTAAAGGATAACTATCGTGCTGTTCGCTTCAATCCATATTTATGGCCCTCTGGTCAAAAGATGACCAATGAAGTTGGAAAGGCAATGTTCTCTAAGGCGGGAGAACTTGGAGTACCAGTTGGCTTTATGTGTATGAAGGGCCTCGGTCTGCATATTTCAGAAATTGAGGAACTATGCACAGAGTTTCCTTCAACACTTGTATTACTTGATCATTTGGCTTTCTGCAAACCACCAATAAATGATGAGGAAAATGAGGCTTTCTCTGCACTTTTAAAGCTATCCAGATTTCCACAGGTCTATGTAAAAGTAAGTGCACTTTTCAGGGTGTCAAGAACGCCATTTCCATATGAAGATGTATCTCACACACTGTCCCAAGTTGTGTCAAGTTTTGGTGCTAACCGTGTCATGTGGGGCAGTGATTTTCCATTTGTTGTTGCTGAGTGTGGTTATAAAGGAGCAAAAGAAGCCGTTTCTTTGATTGCCAGTAAAATACCTCTATCATCTTCAGAGTTGGAGTGGATCATGGGTAGAACAATCTTGCAACTCTTCCAGAATCAGTGGCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010488 GO:0010493 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

328

Amino Acids

36.27

Weight (kDa)

7.62

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	45 - 322	1.3e-29	Amidohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26810 AT1G26810
fragaria_vesca	FvH4_4g31270 FvH4_4g31270 FvH4_4g31270 FvH4_4g31270
malus_domestica	MD13G1071300.v1.1 MD16G1072100.v1.1
prunus_persica	Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1 Prupe.1G275500_v2.0.a1
pyrus_communis	pycom13g06400 pycom16g06250
rosa_chinensis	RchiOBHm_Chr4g0439721
rosa_laevigata	RLG00000006242
rosa_multiflora	Rmu_co8406519.1_g000001 Rmu_sc0023161.1_g000002 Rmu_ssc0000029.1_g000012
rosa_roxburghii	Rroxscaffold_5G00380660
rosa_rugosa	Rorug04G0321000
rosa_samantha	Rh4AG372000 Rh4BG383900 Rh4CG398600 Rh4DG378500
rosa_wichuraiana	Rw4G031750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	944
AcsI	RAATTY	2 cut(s)	299, 347
AcuI	CTGAAG	3 cut(s)	15, 399, 906
AcvI	CACGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	79, 154
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	63, 331, 407, 448, 609
AjnI	CCWGG	2 cut(s)	196, 217
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
AluBI	AGCT	5 cut(s)	29, 35, 377, 403, 694
AluI	AGCT	5 cut(s)	29, 35, 377, 403, 694
Alw21I	GWGCWC	2 cut(s)	274, 733
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	2 cut(s)	270, 729
AlwI	GGATC	1 cut(s)	944
AoxI	GGCC	2 cut(s)	461, 556
ApaLI	GTGCAC	2 cut(s)	270, 729
ApeKI	GCWGC	5 cut(s)	89, 92, 173, 283, 400
ApoI	RAATTY	2 cut(s)	299, 347
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	462, 556
AsuHPI	GGTGA	2 cut(s)	153, 328
BaeGI	GKGCMC	2 cut(s)	274, 733
BanI	GGYRCC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	274, 733
BbvI	GCAGC	5 cut(s)	76, 104, 160, 295, 412
BccI	CCATC	2 cut(s)	349, 377
BceAI	ACGGC	1 cut(s)	869
BciT130I	CCWGG	2 cut(s)	198, 219
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	88
BfmI	CTRYAG	2 cut(s)	90, 102
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	5 cut(s)	90, 93, 174, 284, 401
BlsI	GCNGC	5 cut(s)	91, 94, 175, 285, 402
Bme1390I	CCNGG	2 cut(s)	198, 219
BmgT120I	GGNCC	2 cut(s)	462, 556
BmiI	GGNNCC	3 cut(s)	12, 24, 112
BmrFI	CCNGG	2 cut(s)	198, 219
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	3 cut(s)	76, 150, 224
BsaAI	YACGTR	1 cut(s)	260
BsaBI	GATNNNNATC	3 cut(s)	141, 183, 429
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	197, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 154
Bse1I	ACTGG	3 cut(s)	73, 533, 900
Bse3DI	GCAATG	3 cut(s)	12, 102, 507
Bse8I	GATNNNNATC	3 cut(s)	141, 183, 429
BseBI	CCWGG	2 cut(s)	198, 219
BseDI	CCNNGG	2 cut(s)	197, 559
BseJI	GATNNNNATC	3 cut(s)	141, 183, 429
BseLI	CCNNNNNNNGG	2 cut(s)	79, 154
BseMI	GCAATG	3 cut(s)	12, 102, 507
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	3 cut(s)	73, 533, 900
BseSI	GKGCMC	2 cut(s)	274, 733
BseXI	GCAGC	5 cut(s)	76, 104, 160, 295, 412
BsgI	GTGCAG	2 cut(s)	302, 666
BshFI	GGCC	2 cut(s)	463, 558
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	274, 733
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	2 cut(s)	79, 154
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	463, 558
Bso31I	GGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	274, 733
Bsp143I	GATC	3 cut(s)	304, 625, 936
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	463, 558
BspCNI	CTCAG	1 cut(s)	847
BspLI	GGNNCC	3 cut(s)	12, 24, 112
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	3 cut(s)	12, 102, 507
BsrI	ACTGG	3 cut(s)	73, 533, 900
BssECI	CCNNGG	2 cut(s)	197, 559
BssMI	GATC	3 cut(s)	304, 625, 936
Bst2UI	CCWGG	2 cut(s)	198, 219
Bst4CI	ACNGT	3 cut(s)	269, 786, 818
Bst6I	CTCTTC	1 cut(s)	968
BstBAI	YACGTR	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	36, 510, 855
BstKTI	GATC	3 cut(s)	307, 628, 939
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	304, 625, 936
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 374, 680, 881
BstNI	CCWGG	2 cut(s)	198, 219
BstSCI	CCNGG	2 cut(s)	196, 217
BstSFI	CTRYAG	2 cut(s)	90, 102
BstSLI	GKGCMC	2 cut(s)	274, 733
BstV1I	GCAGC	5 cut(s)	76, 104, 160, 295, 412
BstXI	CCANNNNNNTGG	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	463, 558
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	3 cut(s)	782, 838, 980
Cfr13I	GGNCC	2 cut(s)	462, 556
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	3 cut(s)	149, 823, 940
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	36, 510, 855
DpnI	GATC	3 cut(s)	306, 627, 938
DpnII	GATC	3 cut(s)	304, 625, 936
DraI	TTTAAA	3 cut(s)	43, 420, 690
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	15, 399, 906
Eco72I	CACGTG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	196, 217
FaeI	CATG	3 cut(s)	152, 826, 943
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	3 cut(s)	148, 822, 939
FauI	CCCGC	1 cut(s)	508
FauNDI	CATATG	1 cut(s)	763
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	90, 93, 174, 284, 401
Fsp4HI	GCNGC	5 cut(s)	90, 93, 174, 284, 401
GluI	GCNGC	5 cut(s)	90, 93, 174, 284, 401
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	463, 558
Hin1II	CATG	3 cut(s)	152, 826, 943
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	137, 970
HphI	GGTGA	2 cut(s)	153, 328
Hpy166II	GTNNAC	3 cut(s)	265, 272, 731
Hpy188I	TCNGA	2 cut(s)	577, 925
Hpy188III	TCNNGA	5 cut(s)	63, 167, 699, 747, 967
Hpy8I	GTNNAC	3 cut(s)	265, 272, 731
HpyAV	CCTTC	2 cut(s)	547, 615
HpyCH4III	ACNGT	3 cut(s)	269, 786, 818
HpyCH4IV	ACGT	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 374, 680, 881
HpyF3I	CTNAG	3 cut(s)	36, 510, 855
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	152, 826, 943
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	304, 625, 936
LmnI	GCTCC	1 cut(s)	872
Lsp1109I	GCAGC	5 cut(s)	76, 104, 160, 295, 412
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	306, 627, 938
MboI	GATC	3 cut(s)	304, 625, 936
MboII	GAAGA	6 cut(s)	263, 343, 392, 779, 912, 955
MhlI	GDGCHC	2 cut(s)	274, 733
MluCI	AATT	3 cut(s)	299, 347, 579
MmeI	TCCRAC	2 cut(s)	472, 909
MnlI	CCTC	8 cut(s)	163, 174, 475, 569, 577, 655, 664, 921
MseI	TTAA	5 cut(s)	42, 291, 396, 419, 689
MslI	CAYNNNNRTG	2 cut(s)	147, 457
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	198, 219
MssI	GTTTAAAC	1 cut(s)	43
MvaI	CCWGG	2 cut(s)	198, 219
MwoI	GCNNNNNNNGC	4 cut(s)	98, 374, 680, 881
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	3 cut(s)	304, 625, 936
NlaIII	CATG	3 cut(s)	152, 826, 943
NlaIV	GGNNCC	3 cut(s)	12, 24, 112
NmuCI	GTSAC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	137, 970
PkrI	GCNGC	5 cut(s)	91, 94, 175, 285, 402
PmaCI	CACGTG	1 cut(s)	260
PmeI	GTTTAAAC	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	196, 217
PspCI	CACGTG	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	196, 217
PspN4I	GGNNCC	3 cut(s)	12, 24, 112
PspPI	GGNCC	2 cut(s)	462, 556
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	2 cut(s)	147, 457
SaqAI	TTAA	5 cut(s)	42, 291, 396, 419, 689
SatI	GCNGC	5 cut(s)	90, 93, 174, 284, 401
Sau3AI	GATC	3 cut(s)	304, 625, 936
Sau96I	GGNCC	2 cut(s)	462, 556
ScrFI	CCNGG	2 cut(s)	198, 219
SduI	GDGCHC	2 cut(s)	274, 733
SfcI	CTRYAG	2 cut(s)	90, 102
SmiMI	CAYNNNNRTG	2 cut(s)	147, 457
SmlI	CTYRAG	3 cut(s)	55, 165, 239
SmoI	CTYRAG	3 cut(s)	55, 165, 239
Sse9I	AATT	3 cut(s)	299, 347, 579
SsiI	CCGC	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	196, 217
TaaI	ACNGT	3 cut(s)	269, 786, 818
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	228, 303
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	299, 347, 579
TfiI	GAWTC	2 cut(s)	137, 970
Tru1I	TTAA	5 cut(s)	42, 291, 396, 419, 689
Tru9I	TTAA	5 cut(s)	42, 291, 396, 419, 689
TscAI	CASTG	3 cut(s)	789, 838, 980
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	5 cut(s)	89, 92, 173, 283, 400
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	501, 566, 780
TspRI	CASTG	3 cut(s)	789, 838, 980
VneI	GTGCAC	2 cut(s)	270, 729
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	2 cut(s)	299, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.