Rmu_sc0034734.1_g000001

BTB POZ and TAZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034734.1
OG0005023
Physical Location & Seq
Reverse (-)
1 .. 1075
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034734.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atggaaaccaatcatcataccgcaacgaccaacatctccgacgacctctacggcctctttccggcaacctcaccaaccaaatccggacctcgagagctacctgaacccgatatccacatcctcacccgcgatgctgttcgcattccagcacacgctagcattctggcctccgtgtcgccggtgctggaaaacataatagatcgaccacgtaagcaccgcagctccgaaagagtcatccccatcctcggcgtcccaaacgacgccgtcgtcgccttcacccgcttcctctactcctcaaggtgcacggaagagcacatggagaagtacgcgatccacctactggcgttgtcccacgtgtacttggttccccagctgaagcagagatgcaccaaggagctgggtcaacgtttgagcgttgacaatgtcgtcgacgtgctccaactggccaggctctgcgacgcagcggatctctacctcaagtgcatgaagttggtcgccaatcacttcaaggctgtggaggaaactgaaggctggaaatttgttcaagaccatgatccttacctcgaactcgacattttgcagttcatcgatgaaactgaatcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009743 GO:0009751 GO:0009753 GO:0009755 GO:0009756 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010182 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0045935 GO:0046677 GO:0048229 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051246 GO:0051252 GO:0051338 GO:0051347 GO:0051603 GO:0051716 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071365 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2000278 GO:2000573 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04340 ko04341 map04340 map04341
Pfam Domains
Protein Families
BTB zf-TAZ

Protein Analysis

201

Amino Acids

22.79

Weight (kDa)

5.65

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 266, 425
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 129, 329
AccIII TCCGGA 1 cut(s) 83
AciI CCGC 5 cut(s) 21, 127, 217, 280, 464
AclI AACGTT 1 cut(s) 406
AclWI GGATC 3 cut(s) 325, 474, 548
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 395, 546
AcvI CACGTG 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 249, 261
AfaI GTAC 2 cut(s) 326, 359
AfiI CCNNNNNNNGG 3 cut(s) 61, 245, 340
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 508, 545
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 446
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 4 cut(s) 97, 222, 373, 397
AluI AGCT 4 cut(s) 97, 222, 373, 397
Alw21I GWGCWC 3 cut(s) 305, 315, 438
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 3 cut(s) 325, 474, 548
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 83
AoxI GGCC 3 cut(s) 52, 165, 444
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 219, 461
ApoI RAATTY 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 63, 115, 268
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 305, 315, 438
BbvI GCAGC 2 cut(s) 231, 473
BccI CCATC 1 cut(s) 248
BceAI ACGGC 2 cut(s) 67, 248
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 220, 462
BlsI GCNGC 2 cut(s) 221, 463
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 2 cut(s) 121, 374
BmtI GCTAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 280, 461
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 209, 355
BsaHI GRCGYC 2 cut(s) 249, 261
BsaJI CCNNGG 2 cut(s) 244, 390
BsaWI WCCGGW 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 245, 340
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 345, 447
BseAI TCCGGA 1 cut(s) 83
BseBI CCWGG 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 244, 390
BseGI GGATG 3 cut(s) 117, 234, 240
BseLI CCNNNNNNNGG 3 cut(s) 61, 245, 340
BseNI ACTGG 2 cut(s) 345, 447
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 231, 473
BseYI CCCAGC 2 cut(s) 369, 397
Bsh1236I CGCG 2 cut(s) 129, 329
BshFI GGCC 3 cut(s) 54, 167, 446
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 3 cut(s) 305, 315, 438
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 62, 84, 179
BslFI GGGAC 2 cut(s) 236, 334
BslI CCNNNNNNNGG 3 cut(s) 61, 245, 340
BsmFI GGGAC 2 cut(s) 236, 334
BsmI GAATGC 2 cut(s) 141, 159
BsnI GGCC 3 cut(s) 54, 167, 446
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 305, 315, 438
Bsp13I TCCGGA 1 cut(s) 83
Bsp143I GATC 4 cut(s) 199, 330, 466, 553
BspACI CCGC 5 cut(s) 21, 127, 217, 280, 464
BspANI GGCC 3 cut(s) 54, 167, 446
BspDI ATCGAT 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 83
BspFNI CGCG 2 cut(s) 129, 329
BspLI GGNNCC 1 cut(s) 366
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 3 cut(s) 325, 474, 548
BspQI GCTCTTC 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 345, 447
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 244, 390
BssMI GATC 4 cut(s) 199, 330, 466, 553
BssNI GRCGYC 2 cut(s) 249, 261
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 2 cut(s) 249, 261
BstBAI YACGTR 2 cut(s) 209, 355
BstC8I GCNNGC 1 cut(s) 157
BstF5I GGATG 3 cut(s) 117, 234, 240
BstFNI CGCG 2 cut(s) 129, 329
BstKTI GATC 4 cut(s) 202, 333, 469, 556
BstMBI GATC 4 cut(s) 199, 330, 466, 553
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 2 cut(s) 129, 329
BstV1I GCAGC 2 cut(s) 231, 473
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 588
BsuRI GGCC 3 cut(s) 54, 167, 446
BsuTUI ATCGAT 1 cut(s) 588
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 3 cut(s) 117, 234, 240
Cac8I GCNNGC 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 3 cut(s) 238, 269, 467
Csp6I GTAC 2 cut(s) 325, 358
CviAII CATG 3 cut(s) 316, 484, 551
CviQI GTAC 2 cut(s) 325, 358
DpnI GATC 4 cut(s) 201, 332, 468, 555
DpnII GATC 4 cut(s) 199, 330, 466, 553
DrdI GACNNNNNNGTC 2 cut(s) 266, 425
DseDI GACNNNNNNGTC 2 cut(s) 266, 425
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 395, 546
Eco72I CACGTG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 446
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 319, 487, 554
FaiI YATR 5 cut(s) 18, 194, 317, 485, 552
FaqI GGGAC 2 cut(s) 236, 334
FatI CATG 3 cut(s) 315, 483, 550
FauI CCCGC 2 cut(s) 134, 287
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 220, 462
FokI GGATG 3 cut(s) 104, 221, 227
Fsp4HI GCNGC 2 cut(s) 220, 462
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 220, 462
GsaI CCCAGC 2 cut(s) 373, 401
HaeIII GGCC 3 cut(s) 54, 167, 446
HapII CCGG 3 cut(s) 62, 84, 179
HgaI GACGC 3 cut(s) 238, 269, 467
Hin1I GRCGYC 2 cut(s) 249, 261
Hin1II CATG 3 cut(s) 319, 487, 554
HincII GTYRAC 3 cut(s) 404, 418, 430
HindII GTYRAC 3 cut(s) 404, 418, 430
HinfI GANTC 2 cut(s) 231, 599
HpaII CCGG 3 cut(s) 62, 84, 179
HphI GGTGA 3 cut(s) 63, 115, 268
Hpy166II GTNNAC 5 cut(s) 303, 358, 404, 418, 430
Hpy188I TCNGA 2 cut(s) 40, 226
Hpy188III TCNNGA 3 cut(s) 84, 92, 545
Hpy8I GTNNAC 5 cut(s) 303, 358, 404, 418, 430
Hpy99I CGWCG 7 cut(s) 44, 263, 269, 272, 431, 434, 461
HpyAV CCTTC 2 cut(s) 283, 521
HpyCH4IV ACGT 4 cut(s) 208, 354, 406, 432
HpyCH4V TGCA 4 cut(s) 303, 387, 483, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpySE526I ACGT 4 cut(s) 208, 354, 406, 432
Hsp92I GRCGYC 2 cut(s) 249, 261
Hsp92II CATG 3 cut(s) 319, 487, 554
Kpn2I TCCGGA 1 cut(s) 83
Kzo9I GATC 4 cut(s) 199, 330, 466, 553
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 3 cut(s) 227, 394, 441
Lsp1109I GCAGC 2 cut(s) 231, 473
LweI GCATC 2 cut(s) 121, 374
MaeI CTAG 1 cut(s) 156
MaeII ACGT 4 cut(s) 208, 354, 406, 432
MalI GATC 4 cut(s) 201, 332, 468, 555
MboI GATC 4 cut(s) 199, 330, 466, 553
MboII GAAGA 1 cut(s) 320
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 3 cut(s) 305, 315, 438
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 63, 463
Mox20I TGGCCA 1 cut(s) 446
MroI TCCGGA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 373, 464
MspI CCGG 3 cut(s) 62, 84, 179
MspR9I CCNGG 1 cut(s) 448
Mva1269I GAATGC 2 cut(s) 141, 159
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 2 cut(s) 129, 329
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 4 cut(s) 199, 330, 466, 553
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 319, 487, 554
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 2 cut(s) 141, 159
PfeI GAWTC 1 cut(s) 599
PflFI GACNNNGTC 2 cut(s) 263, 422
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 221, 463
PleI GAGTC 1 cut(s) 239
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 2 cut(s) 209, 355
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 446
PspCI CACGTG 1 cut(s) 355
PspFI CCCAGC 2 cut(s) 369, 397
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 2 cut(s) 263, 422
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 2 cut(s) 326, 359
RsaNI GTAC 2 cut(s) 325, 358
SalI GTCGAC 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 2 cut(s) 220, 462
Sau3AI GATC 4 cut(s) 199, 330, 466, 553
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 3 cut(s) 305, 315, 438
SfaNI GCATC 2 cut(s) 121, 374
Sfr274I CTCGAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 178
SgrDI CGTCGACG 1 cut(s) 428
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 3 cut(s) 90, 295, 476
SmoI CTYRAG 3 cut(s) 90, 295, 476
Sse9I AATT 1 cut(s) 536
SsiI CCGC 5 cut(s) 21, 127, 217, 280, 464
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 390
TaiI ACGT 4 cut(s) 211, 357, 409, 435
TaqI TCGA 6 cut(s) 91, 202, 429, 564, 570, 588
TasI AATT 1 cut(s) 536
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 599
TseI GCWGC 2 cut(s) 219, 461
TspDTI ATGAA 2 cut(s) 500, 574
TspGWI ACGGA 2 cut(s) 160, 320
Tth111I GACNNNGTC 2 cut(s) 263, 422
Van91I CCANNNNNTGG 1 cut(s) 340
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 536
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.