Rmu_sc0035773.1_g000001

DUF3700

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035773.1
OG0017391
Physical Location & Seq
Forward (+)
225 .. 728
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035773.1_g000001.1.cds

Sequence Viewer

Length: 292 bp
atgttgacggttttcgacaaggcaacaggaaaccctcctgtagagctggggcttccttcgattgggccggagaaggcaaagaccagagaggaaatcttgaagcttttccaatcatcacgtcctgagtgcactgtatgctacctttcagatgggaatttcatggctttgtctcatgacaatgaaaatcagtctcacccaaggtcaattgtactcatagacgatgtcttctgcattttcattgggactttggagaacacttctgacctgagacgatactatggccttccaaggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

97

Amino Acids

10.92

Weight (kDa)

5.25

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017391)

Species Orthologous Gene IDs
malus_domestica MD00G1095400.v1.1
prunus_persica Prupe.4G045300_v2.0.a1
pyrus_communis pycom10g24780
rosa_chinensis RchiOBHm_Chr5g0008201
rosa_laevigata RLG00000031546
rosa_multiflora Rmu_sc0001626.1_g000020 Rmu_sc0035773.1_g000001
rosa_rugosa Rorug04G0434200.1
rosa_samantha Rh5AG062300 Rh5BG058800 Rh5CG069300 Rh5DG058200
rosa_wichuraiana Rw5G005840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 2 cut(s) 46, 103
AluI AGCT 2 cut(s) 46, 103
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 3 cut(s) 174, 195, 262
Alw44I GTGCAC 1 cut(s) 127
AoxI GGCC 2 cut(s) 65, 280
ApaLI GTGCAC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 131
BccI CCATC 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 174, 195, 262
BfmI CTRYAG 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 197, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 197, 287
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 114, 257
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 67, 282
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 174, 195, 262
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 67, 282
Bsp1286I GDGCHC 1 cut(s) 131
BspANI GGCC 2 cut(s) 67, 282
BspCNI CTCAG 2 cut(s) 115, 258
BspHI TCATGA 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 197, 287
BssT1I CCWWGG 2 cut(s) 197, 287
Bst4CI ACNGT 2 cut(s) 10, 133
BstAPI GCANNNNNTGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 123, 266
BstMAI GTCTC 3 cut(s) 174, 195, 262
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 67, 282
BtrI CACGTC 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 160, 173
CviJI RGCY 6 cut(s) 46, 52, 67, 103, 164, 282
CviKI_1 RGCY 6 cut(s) 46, 52, 67, 103, 164, 282
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 2 cut(s) 123, 266
Eco130I CCWWGG 2 cut(s) 197, 287
EcoT14I CCWWGG 2 cut(s) 197, 287
ErhI CCWWGG 2 cut(s) 197, 287
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 2 cut(s) 163, 176
FaiI YATR 5 cut(s) 136, 161, 174, 215, 279
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 159, 172
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 67, 282
HapII CCGG 1 cut(s) 68
Hin1II CATG 2 cut(s) 163, 176
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 101
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 6, 129
Hpy188I TCNGA 2 cut(s) 148, 262
Hpy188III TCNNGA 3 cut(s) 97, 122, 173
Hpy8I GTNNAC 2 cut(s) 6, 129
HpyAV CCTTC 2 cut(s) 66, 67
HpyCH4III ACNGT 2 cut(s) 10, 133
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 129, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 123, 266
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 2 cut(s) 163, 176
LpnPI CCDG 7 cut(s) 12, 32, 51, 81, 97, 135, 278
MaeII ACGT 1 cut(s) 118
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 154, 204
MnlI CCTC 2 cut(s) 45, 82
MroXI GAANNNNTTC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 135
NlaIII CATG 2 cut(s) 163, 176
PagI TCATGA 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 65
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 48, 105, 121, 144, 203, 267
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 154, 204
StyI CCWWGG 2 cut(s) 197, 287
TaaI ACNGT 2 cut(s) 10, 133
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 15, 59
TasI AATT 2 cut(s) 154, 204
TatI WGTACW 1 cut(s) 208
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 148, 195, 226
TspRI CASTG 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 221
VneI GTGCAC 1 cut(s) 127
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.