Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036365.1

Orthogroup ID

OG0012177

Physical Location & Seq

Genomic Coordinates Reverse (-)

263 .. 1609

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036365.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcaaaaggttccgggatgatccacccaaatatggctaccatgcttggtgtagtaacaactgatgccgtggttagcagtgatgtttggagaaaaatggttcaaattgctgtaaatagaagcttcaaccagataacagtagacggagataccagtaccaatgatactgtcattgccttagctagtgggttgtctggatcaaccaagatatcaacctttaacagtaatgaggcagtacaacttcaagcatgtcttgatgtggtaatgcaaggtcttgccaaatcaatagcttgggatggagaaggagcaacatgcctaattgaggtcacagtgactggtgcaggcagtgaggctgaagcagcaaagatagcgcggtctgtggcatcttcttcgcttgttaaggctgctgtatatggaagagatccaaactggggacgcatcgctgctgctgcaggctatgcgggtatttcttttgatcaaactaagcttcgagtattgctaggtgatactctgctgatggatggtggggaaccacaatccttcgacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004042 GO:0004358 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006592 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ArgJ

Protein Analysis

183

Amino Acids

18.99

Weight (kDa)

4.9

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37500 AT2G37500
fragaria_vesca	FvH4_6g14300 FvH4_6g14300
malus_domestica	MD04G1121900.v1.1 MD12G1138500.v1.1
prunus_persica	Prupe.6G250400_v2.0.a1 Prupe.6G250400_v2.0.a1
pyrus_communis	pycom04g11050 pycom12g13250
rosa_chinensis	RchiOBHm_Chr3g0467271
rosa_multiflora	Rmu_sc0036365.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413760
rosa_rugosa	Rorug03G0086400
rosa_samantha	Rh3AG134700 Rh3BG156000 Rh3CG155600 Rh3DG156800
rosa_wichuraiana	Rw3G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	373
AciI	CCGC	2 cut(s)	373, 461
AclWI	GGATC	3 cut(s)	16, 205, 416
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	157, 237
AfiI	CCNNNNNNNGG	4 cut(s)	34, 322, 431, 546
AgsI	TTSAA	3 cut(s)	104, 127, 245
AluBI	AGCT	4 cut(s)	123, 182, 290, 487
AluI	AGCT	4 cut(s)	123, 182, 290, 487
AlwI	GGATC	3 cut(s)	16, 205, 416
AlwNI	CAGNNNCTG	1 cut(s)	335
ApeKI	GCWGC	5 cut(s)	359, 404, 443, 446, 449
AspLEI	GCGC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	515
BbvI	GCAGC	5 cut(s)	371, 391, 430, 433, 436
BccI	CCATC	3 cut(s)	290, 511, 515
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	2 cut(s)	183, 500
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	5 cut(s)	360, 405, 444, 447, 450
BlsI	GCNGC	5 cut(s)	361, 406, 445, 448, 451
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	13, 531
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	3 cut(s)	55, 392, 447
BmuI	ACTGGG	1 cut(s)	439
Bpu10I	CCTNAGC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 322, 431, 546
Bse1I	ACTGG	3 cut(s)	153, 340, 434
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	24, 301, 526
BseLI	CCNNNNNNNGG	4 cut(s)	34, 322, 431, 546
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	153, 340, 434
BseXI	GCAGC	5 cut(s)	371, 391, 430, 433, 436
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	4 cut(s)	34, 322, 431, 546
BsmFI	GGGAC	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	21, 197, 421, 475
BspACI	CCGC	2 cut(s)	373, 461
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	13, 531
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	16, 205, 416
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	153, 340, 434
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	4 cut(s)	21, 197, 421, 475
Bst4CI	ACNGT	4 cut(s)	139, 169, 224, 331
Bst6I	CTCTTC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	343, 454
BstDEI	CTNAG	2 cut(s)	178, 483
BstDSI	CCRYGG	1 cut(s)	69
BstENI	CCTNNNNNAGG	2 cut(s)	320, 544
BstF5I	GGATG	3 cut(s)	24, 301, 526
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	4 cut(s)	24, 200, 424, 478
BstMBI	GATC	4 cut(s)	21, 197, 421, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 368, 449, 458
BstNSI	RCATGY	2 cut(s)	252, 315
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	371, 391, 430, 433, 436
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	24, 301, 526
BtsI	GCAGTG	2 cut(s)	85, 352
BtsIMutI	CAGTG	3 cut(s)	85, 336, 352
Cac8I	GCNNGC	2 cut(s)	343, 454
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	373
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	156, 236
CviAII	CATG	3 cut(s)	43, 249, 312
CviJI	RGCY	8 cut(s)	38, 123, 182, 290, 353, 404, 456, 487
CviKI_1	RGCY	8 cut(s)	38, 123, 182, 290, 353, 404, 456, 487
CviQI	GTAC	2 cut(s)	156, 236
DdeI	CTNAG	2 cut(s)	178, 483
DpnI	GATC	4 cut(s)	23, 199, 423, 477
DpnII	GATC	4 cut(s)	21, 197, 421, 475
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	2 cut(s)	320, 544
EcoRV	GATATC	1 cut(s)	210
FaeI	CATG	3 cut(s)	46, 252, 315
FaiI	YATR	7 cut(s)	35, 44, 250, 313, 412, 414, 459
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	42, 248, 311
FauI	CCCGC	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	360, 405, 444, 447, 450
FokI	GGATG	3 cut(s)	31, 308, 533
Fsp4HI	GCNGC	5 cut(s)	360, 405, 444, 447, 450
FspBI	CTAG	2 cut(s)	183, 500
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	5 cut(s)	360, 405, 444, 447, 450
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	46, 252, 315
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	2 cut(s)	121, 485
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	195, 254
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	296, 550
HpyCH4III	ACNGT	4 cut(s)	139, 169, 224, 331
HpyCH4V	TGCA	3 cut(s)	268, 341, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 368, 449, 458
HpyF3I	CTNAG	2 cut(s)	178, 483
Hsp92II	CATG	3 cut(s)	46, 252, 315
HspAI	GCGC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	21, 197, 421, 475
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	28, 143, 166, 180, 321, 327, 415, 438, 532
Lsp1109I	GCAGC	5 cut(s)	371, 391, 430, 433, 436
LweI	GCATC	3 cut(s)	55, 392, 447
MaeI	CTAG	2 cut(s)	183, 500
MaeIII	GTNAC	3 cut(s)	55, 325, 331
MalI	GATC	4 cut(s)	23, 199, 423, 477
MboI	GATC	4 cut(s)	21, 197, 421, 475
MboII	GAAGA	3 cut(s)	378, 381, 429
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	2 cut(s)	105, 318
MnlI	CCTC	3 cut(s)	223, 316, 343
MseI	TTAA	2 cut(s)	219, 399
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	359, 368, 449, 458
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	4 cut(s)	21, 197, 421, 475
NlaIII	CATG	3 cut(s)	46, 252, 315
NlaIV	GGNNCC	2 cut(s)	13, 531
NmuCI	GTSAC	2 cut(s)	325, 331
NspI	RCATGY	2 cut(s)	252, 315
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	361, 406, 445, 448, 451
PspN4I	GGNNCC	2 cut(s)	13, 531
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	157, 237
RsaNI	GTAC	2 cut(s)	156, 236
SaqAI	TTAA	2 cut(s)	219, 399
SatI	GCNGC	5 cut(s)	360, 405, 444, 447, 450
Sau3AI	GATC	4 cut(s)	21, 197, 421, 475
ScrFI	CCNGG	1 cut(s)	16
SfaNI	GCATC	3 cut(s)	55, 392, 447
SfcI	CTRYAG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	105, 318
SsiI	CCGC	2 cut(s)	373, 461
SspMI	CTAG	2 cut(s)	183, 500
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	4 cut(s)	139, 169, 224, 331
TaqI	TCGA	2 cut(s)	490, 543
TasI	AATT	2 cut(s)	105, 318
TatI	WGTACW	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	219, 399
Tru9I	TTAA	2 cut(s)	219, 399
TscAI	CASTG	3 cut(s)	85, 336, 352
TseFI	GTSAC	2 cut(s)	325, 331
TseI	GCWGC	5 cut(s)	359, 404, 443, 446, 449
Tsp45I	GTSAC	2 cut(s)	325, 331
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	85, 336, 352
XagI	CCTNNNNNAGG	2 cut(s)	320, 544
XceI	RCATGY	2 cut(s)	252, 315
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	183, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.