Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

6668243 .. 6669913

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0086400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCCGAGTGAAGGAACAGCAAACTTTATCGATATACTCATCGCCATCCTCTTGCCTCCTCTTGGGGTCTTCCTCAAGTTTGGCTGCCAAGTGGAGTTCTGGATCTGTCTGTTGCTGACCATTTTCGGTTACATCCCTGGGATTATCTATGCCATCTATATAATCACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004042 GO:0004358 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006592 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ArgJ

Protein Analysis

57

Amino Acids

6.38

Weight (kDa)

4.68

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pmp3	PF01679	9 - 55	6.2e-22	Proteolipid membrane potential modulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	11, 62
AjnI	CCWGG	1 cut(s)	136
AlwI	GGATC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	53, 161
BciT130I	CCWGG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	136, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 62
BseBI	CCWGG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	136, 137
BseGI	GGATG	2 cut(s)	45, 132
BseLI	CCNNNNNNNGG	2 cut(s)	11, 62
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	11, 62
Bsp143I	GATC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	30
BspPI	GGATC	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	136, 137
BssMI	GATC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	45, 132
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	30
BsuTUI	ATCGAT	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	45, 132
ClaI	ATCGAT	1 cut(s)	30
CviJI	RGCY	1 cut(s)	84
CviKI_1	RGCY	1 cut(s)	84
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DraIII	CACNNNGTG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	136
FaiI	YATR	4 cut(s)	35, 150, 159, 161
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	2 cut(s)	32, 119
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	3 cut(s)	85, 123, 150
Lsp1109I	GCAGC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	102
MnlI	CCTC	4 cut(s)	59, 66, 69, 83
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	102
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	138
SgeI	CNNG	8 cut(s)	18, 64, 74, 88, 101, 112, 149, 150
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.