Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

15697682 .. 15699306

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAACCGGTGGGAAGTTCAAGAAAGGCGCAGGAGGGAGGAGAGCCGGCGGTCCCAAGAAAAAACCGGTTACCCGGTCTGTGAGAGCTGGTCTGCAGTTCCCGGTCGGACGTATCGGCCGGTACTTGAAGCATGGCCGATACGCTCAGCGAATCGGAACCGGAGCTCCGGTTTATCTGGCTGCTGTGCTCGAGTACCTTGCTGCCGAGGTTTTGGAACTGGCTGGAAATGCTGCAAGAGACAACAAGAAGAATCGCATTATCCCAAGGCATGTGCTATTGGCCGTGAGGAACGATGAAGAACTTGGAAAGCTCCTGAAGGGTGTGACAATTGCTCATGGTGGTGTGCTTCCCAACATCAACCCTGTGCTTCTGCCAAAGAAGCATGAGAGGGTTGCGAAGGAGCCCAAGTCGCCCGTCAAAGCTGCCACCAAGTCCCCTAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

151

Amino Acids

16.12

Weight (kDa)

10.85

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 97	5.2e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	100 - 130	1.5e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AcoI	YGGCCR	3 cut(s)	118, 136, 282
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	125, 197
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgeI	ACCGGT	2 cut(s)	8, 67
AgsI	TTSAA	2 cut(s)	22, 130
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
AluBI	AGCT	4 cut(s)	89, 167, 313, 425
AluI	AGCT	4 cut(s)	89, 167, 313, 425
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	118, 136, 282
ApeKI	GCWGC	4 cut(s)	182, 203, 233, 425
AsiGI	ACCGGT	2 cut(s)	8, 67
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	76, 104
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	169, 408
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvI	GCAGC	4 cut(s)	169, 190, 220, 412
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	2 cut(s)	76, 104
BcoDI	GTCTC	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	4 cut(s)	183, 204, 234, 426
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	184, 205, 235, 427
Bme1390I	CCNGG	2 cut(s)	76, 104
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	3 cut(s)	55, 160, 405
BmrFI	CCNGG	2 cut(s)	76, 104
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	76, 104
BsaJI	CCNNGG	2 cut(s)	207, 266
BsaWI	WCCGGW	4 cut(s)	8, 67, 161, 169
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 156, 181, 186, 395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	4 cut(s)	8, 47, 67, 120
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	207, 266
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	169, 190, 220, 412
Bsh1285I	CGRYCG	2 cut(s)	108, 121
BshFI	GGCC	3 cut(s)	120, 138, 284
BshTI	ACCGGT	2 cut(s)	8, 67
BsiEI	CGRYCG	2 cut(s)	108, 121
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
BslFI	GGGAC	2 cut(s)	39, 421
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	39, 421
BsnI	GGCC	3 cut(s)	120, 138, 284
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	169, 192, 408
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	120, 138, 284
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	55, 160, 405
BspMAI	CTGCAG	1 cut(s)	99
BsrFI	RCCGGY	4 cut(s)	8, 47, 67, 120
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	4 cut(s)	8, 47, 67, 120
BssECI	CCNNGG	2 cut(s)	207, 266
BssT1I	CCWWGG	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	147, 441
BstEII	GGTNACC	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	234
BstMCI	CGRYCG	2 cut(s)	108, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	74, 102
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	169, 190, 220, 412
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	120, 138, 284
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	4 cut(s)	8, 47, 67, 120
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	124, 196
CspAI	ACCGGT	2 cut(s)	8, 67
CviAII	CATG	4 cut(s)	134, 272, 338, 386
CviQI	GTAC	2 cut(s)	124, 196
DdeI	CTNAG	2 cut(s)	147, 441
EaeI	YGGCCR	3 cut(s)	118, 136, 282
EagI	CGGCCG	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	169, 408
Eco47I	GGWCC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	169, 408
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	4 cut(s)	137, 275, 341, 389
FaiI	YATR	5 cut(s)	135, 273, 339, 387, 451
FaqI	GGGAC	2 cut(s)	39, 421
FatI	CATG	4 cut(s)	133, 271, 337, 385
Fnu4HI	GCNGC	4 cut(s)	183, 204, 234, 426
FriOI	GRGCYC	2 cut(s)	169, 408
Fsp4HI	GCNGC	4 cut(s)	183, 204, 234, 426
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	183, 204, 234, 426
HaeIII	GGCC	3 cut(s)	120, 138, 284
HapII	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	137, 275, 341, 389
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	153, 253
HpaII	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
Hpy188I	TCNGA	2 cut(s)	110, 158
Hpy188III	TCNNGA	2 cut(s)	22, 316
HpyAV	CCTTC	3 cut(s)	313, 394, 439
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	97, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
HpyF3I	CTNAG	2 cut(s)	147, 441
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	137, 275, 341, 389
HspAI	GCGC	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	4 cut(s)	164, 172, 318, 403
Lsp1109I	GCAGC	4 cut(s)	169, 190, 220, 412
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	70, 325
MboII	GAAGA	2 cut(s)	262, 311
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	3 cut(s)	169, 192, 408
MluCI	AATT	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	29, 33, 202, 282, 384
MroNI	GCCGGC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
MspR9I	CCNGG	2 cut(s)	76, 104
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	2 cut(s)	76, 104
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	137, 275, 341, 389
NlaIV	GGNNCC	3 cut(s)	55, 160, 405
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	153, 253
PinAI	ACCGGT	2 cut(s)	8, 67
PkrI	GCNGC	4 cut(s)	184, 205, 235, 427
Psp124BI	GAGCTC	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	55, 160, 405
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	169
SatI	GCNGC	4 cut(s)	183, 204, 234, 426
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	76, 104
SduI	GDGCHC	3 cut(s)	169, 192, 408
SetI	ASST	7 cut(s)	91, 115, 169, 201, 213, 315, 427
SfcI	CTRYAG	1 cut(s)	95
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	74, 102
StyI	CCWWGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	153, 253
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	4 cut(s)	182, 203, 233, 425
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.