Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

21580113 .. 21582097

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1138300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAACCGGTGGGAAGTTCAAGAAAGGCGCAGGAGGGAGGAGAGCCGGCGGTCCCAAGAAAAAACCGGTTACCCGGTCTGTGAGAGCTGGTCTGCAGTTCCCGGTCGGACGTATCGGCCGGTACTTGAAGCATGGCCGATACGCTCAGCGAATCGGAACCGGAGCTCCGGTTTATCTGGCTGCTGTGCTCGAGTACCTTGCTGCTGAGGTTTTGGAACTGGCTGGAAATGCTGCAAGAGACAACAAGAAGAATCGCATTATCCCAAGGCATGTGCTATTGGCCGTGAGGAACGATGAAGAACTTGGAAAGCTCCTGAAGGGTGTGACAATTGCTCATGGCGGTGTTCTTCCCAACATCAATCCTGTGCTTCTGCCAAAGAAGCATGAGAGGGTTGCGAAAGAGCCCAAGTCGCCCGTCAAAGCTGCCACCAAGTCCCCTAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

151

Amino Acids

16.12

Weight (kDa)

10.85

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 97	5.2e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	100 - 130	1.5e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 342
AcoI	YGGCCR	3 cut(s)	118, 136, 282
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	125, 197
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgeI	ACCGGT	2 cut(s)	8, 67
AgsI	TTSAA	2 cut(s)	22, 130
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
AluBI	AGCT	4 cut(s)	89, 167, 313, 425
AluI	AGCT	4 cut(s)	89, 167, 313, 425
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	118, 136, 282
ApeKI	GCWGC	4 cut(s)	182, 203, 233, 425
AsiGI	ACCGGT	2 cut(s)	8, 67
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	76, 104
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	169, 408
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	169, 190, 220, 412
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	2 cut(s)	76, 104
BcoDI	GTCTC	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	4 cut(s)	183, 204, 234, 426
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	184, 205, 235, 427
Bme1390I	CCNGG	2 cut(s)	76, 104
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	55, 160
BmrFI	CCNGG	2 cut(s)	76, 104
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	76, 104
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	4 cut(s)	8, 67, 161, 169
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 156, 181, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	4 cut(s)	8, 47, 67, 120
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	161, 198
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	169, 190, 220, 412
Bsh1285I	CGRYCG	2 cut(s)	108, 121
BshFI	GGCC	3 cut(s)	120, 138, 284
BshTI	ACCGGT	2 cut(s)	8, 67
BsiEI	CGRYCG	2 cut(s)	108, 121
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
BslFI	GGGAC	2 cut(s)	39, 421
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	39, 421
BsnI	GGCC	3 cut(s)	120, 138, 284
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	169, 192, 408
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	51, 342
BspANI	GGCC	3 cut(s)	120, 138, 284
BspCNI	CTCAG	2 cut(s)	160, 199
BspLI	GGNNCC	2 cut(s)	55, 160
BspMAI	CTGCAG	1 cut(s)	99
BsrFI	RCCGGY	4 cut(s)	8, 47, 67, 120
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	4 cut(s)	8, 47, 67, 120
BssECI	CCNNGG	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	147, 207, 441
BstEII	GGTNACC	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	234
BstMCI	CGRYCG	2 cut(s)	108, 121
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	74, 102
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	169, 190, 220, 412
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	120, 138, 284
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	4 cut(s)	8, 47, 67, 120
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	124, 196
CspAI	ACCGGT	2 cut(s)	8, 67
CviAII	CATG	4 cut(s)	134, 272, 338, 386
CviQI	GTAC	2 cut(s)	124, 196
DdeI	CTNAG	3 cut(s)	147, 207, 441
EaeI	YGGCCR	3 cut(s)	118, 136, 282
EagI	CGGCCG	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	169, 408
Eco47I	GGWCC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	169, 408
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	4 cut(s)	137, 275, 341, 389
FaiI	YATR	5 cut(s)	135, 273, 339, 387, 451
FaqI	GGGAC	2 cut(s)	39, 421
FatI	CATG	4 cut(s)	133, 271, 337, 385
Fnu4HI	GCNGC	4 cut(s)	183, 204, 234, 426
FriOI	GRGCYC	2 cut(s)	169, 408
Fsp4HI	GCNGC	4 cut(s)	183, 204, 234, 426
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	183, 204, 234, 426
HaeIII	GGCC	3 cut(s)	120, 138, 284
HapII	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	137, 275, 341, 389
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	153, 253
HpaII	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
Hpy188I	TCNGA	2 cut(s)	110, 158
Hpy188III	TCNNGA	2 cut(s)	22, 316
HpyAV	CCTTC	2 cut(s)	313, 439
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	97, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
HpyF3I	CTNAG	3 cut(s)	147, 207, 441
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	137, 275, 341, 389
HspAI	GCGC	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	164, 172, 318
Lsp1109I	GCAGC	4 cut(s)	169, 190, 220, 412
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	70, 325
MboII	GAAGA	3 cut(s)	262, 311, 341
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	3 cut(s)	169, 192, 408
MluCI	AATT	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	29, 33, 202, 282, 384
MroNI	GCCGGC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	8 cut(s)	9, 48, 68, 76, 104, 121, 162, 170
MspR9I	CCNGG	2 cut(s)	76, 104
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	230, 382, 412
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	2 cut(s)	76, 104
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	137, 275, 341, 389
NlaIV	GGNNCC	2 cut(s)	55, 160
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	153, 253
PinAI	ACCGGT	2 cut(s)	8, 67
PkrI	GCNGC	4 cut(s)	184, 205, 235, 427
Psp124BI	GAGCTC	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	55, 160
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	169
SatI	GCNGC	4 cut(s)	183, 204, 234, 426
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	76, 104
SduI	GDGCHC	3 cut(s)	169, 192, 408
SetI	ASST	7 cut(s)	91, 115, 169, 201, 213, 315, 427
SfcI	CTRYAG	1 cut(s)	95
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	51, 342
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	74, 102
StyI	CCWWGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	153, 253
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	4 cut(s)	182, 203, 233, 425
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.